Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 2.6e-256 888.6 611 100.0
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 5.1e-42 176.8 273 37.7
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.5e-41 174.5 266 37.2
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 3.3e-41 174.1 261 38.3
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 5.6e-41 173.3 275 38.5
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 2.1e-40 171.4 272 37.9
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.1e-40 171.4 257 39.3
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 2.1e-40 171.4 261 38.3
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.8e-40 171.0 273 36.6
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 2.8e-40 171.0 262 38.5
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 3.7e-40 170.6 272 37.1
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 4.8e-40 170.2 265 38.1
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 4.8e-40 170.2 259 39.0
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 8.1e-40 169.5 270 37.4
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 8.1e-40 169.5 270 38.5
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.1e-39 169.1 270 37.8
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.4e-39 168.7 258 36.4
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.4e-39 168.7 265 37.7
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 1.4e-39 168.7 265 37.7
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.8e-39 168.3 263 38.0
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.8e-39 168.3 265 37.4
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.8e-39 168.3 265 39.2
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 2.4e-39 167.9 257 37.4
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 2.4e-39 167.9 261 36.8
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 3.1e-39 167.5 274 37.2
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 4.0e-39 167.2 273 37.4
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 5.3e-39 166.8 265 37.7
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 5.3e-39 166.8 261 37.5
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 5.3e-39 166.8 261 37.5
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 5.3e-39 166.8 265 38.5
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 5.3e-39 166.8 265 37.4
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 6.9e-39 166.4 263 37.3
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 6.9e-39 166.4 262 38.9
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 6.9e-39 166.4 275 37.8
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 1.2e-38 165.6 269 38.7
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 1.2e-38 165.6 265 37.0
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 1.5e-38 165.2 261 38.3
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 1.5e-38 165.2 262 37.8
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 1.5e-38 165.2 265 38.1
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.5e-38 165.2 263 37.3
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 1.5e-38 165.2 266 36.8
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 1.5e-38 165.2 261 38.3
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 2.0e-38 164.9 255 39.2
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 2.0e-38 164.9 266 37.2
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 2.6e-38 164.5 262 38.2
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.6e-38 164.5 265 37.7
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 2.6e-38 164.5 268 36.6
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 2.6e-38 164.5 268 36.6
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 2.6e-38 164.5 268 36.6
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 2.6e-38 164.5 268 36.6
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 2.6e-38 164.5 265 37.4
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 2.6e-38 164.5 258 36.8
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 3.4e-38 164.1 266 36.8
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 3.4e-38 164.1 265 37.4
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 3.4e-38 164.1 273 36.3
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 3.4e-38 164.1 265 35.8
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 4.5e-38 163.7 251 37.5
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 4.5e-38 163.7 261 36.8
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 5.8e-38 163.3 275 37.8
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 5.8e-38 163.3 255 38.0
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 5.8e-38 163.3 261 36.4
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 7.6e-38 162.9 265 36.6
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 7.6e-38 162.9 260 36.9
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 7.6e-38 162.9 271 35.8
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 1.0e-37 162.5 258 36.0
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.3e-37 162.2 262 37.0
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 1.3e-37 162.2 255 37.6
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.3e-37 162.2 260 36.5
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.3e-37 162.2 260 36.5
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 1.3e-37 162.2 262 35.5
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 1.3e-37 162.2 265 37.0
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.3e-37 162.2 281 39.9
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 1.3e-37 162.2 255 37.3
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.7e-37 161.8 265 35.5
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 1.7e-37 161.8 265 36.2
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 2.2e-37 161.4 265 35.1
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 2.2e-37 161.4 254 37.0
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 2.2e-37 161.4 263 36.5
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 3.8e-37 160.6 259 36.7
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 3.8e-37 160.6 265 36.2
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 3.8e-37 160.6 280 36.4
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 3.8e-37 160.6 280 36.4
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 4.9e-37 160.2 251 37.5
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 6.5e-37 159.8 260 36.5
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 8.4e-37 159.5 251 37.5
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 8.4e-37 159.5 243 38.3
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 8.4e-37 159.5 263 35.4
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.1e-36 159.1 265 35.8
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 1.1e-36 159.1 263 37.3
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.1e-36 159.1 255 35.7
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 1.1e-36 159.1 275 35.6
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 1.1e-36 159.1 257 37.7
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 1.9e-36 158.3 265 35.1
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 1.9e-36 158.3 258 37.2
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 1.9e-36 158.3 258 37.2
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 1.9e-36 158.3 255 37.3
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 1.9e-36 158.3 255 38.0
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 1.9e-36 158.3 255 37.3
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 2.5e-36 157.9 255 37.3
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 3.2e-36 157.5 265 36.2
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 3.2e-36 157.5 263 38.0
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 3.2e-36 157.5 264 36.4
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 5.5e-36 156.8 262 34.7
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.5e-36 156.8 264 34.8
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 9.3e-36 156.0 263 34.6
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 9.3e-36 156.0 271 35.8
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 1.2e-35 155.6 259 37.8
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 2.1e-35 154.8 257 38.1
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 2.7e-35 154.5 255 35.3
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 4.6e-35 153.7 266 35.3
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 6.0e-35 153.3 261 36.0
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 6.0e-35 153.3 261 36.0
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 7.9e-35 152.9 255 35.7
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 1.3e-34 152.1 265 35.5
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 8.7e-34 149.4 255 35.7
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 1.9e-33 148.3 222 38.7
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.9e-33 148.3 251 35.9
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 3.3e-33 147.5 219 38.8
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 3.7e-32 144.1 224 37.5
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 1.2e-30 139.0 167 43.1
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.4e-28 132.1 220 37.7
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 1.4e-28 132.1 195 40.5
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.5e-28 131.3 195 40.0
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.5e-28 130.2 261 33.3
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 6.1e-27 126.7 197 39.1
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.3e-26 125.6 154 42.9
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 8.7e-26 122.9 180 40.0
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 4.3e-25 120.6 259 33.6
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 7.4e-25 119.8 180 40.0
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.8e-21 107.5 226 31.4
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 8.5e-21 106.3 226 31.4
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 3.2e-20 104.4 91 57.1
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.8e-15 88.6 126 42.1
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 2.1e-11 75.1 152 31.6
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 6.1e-11 73.6 152 30.9
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 3.9e-10 70.9 152 31.6
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 3.9e-10 70.9 152 31.6
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 5.1e-10 70.5 152 30.3
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 5.1e-10 70.5 143 30.8
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 5.1e-10 70.5 143 30.8
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 2.0e-09 68.6 100 39.0
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 2.6e-09 68.2 152 29.6
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 4.4e-09 67.4 60 56.7
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 2.8e-08 64.7 152 28.9
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 3.7e-08 64.3 164 31.7
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.4e-07 62.4 142 29.6
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.4e-07 62.4 142 29.6


User provided reference genes

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