Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g229000 Chlamydomonas reinhardtii HOM05D003425 ORTHO05D003897 7.9e-280 966.8 635 100.0
Cre04.g229100 Chlamydomonas reinhardtii HOM05D003425 ORTHO05D003897 3.2e-63 247.3 120 97.5
SMO200G0117 Selaginella moellendorffii HOM05D003425 ORTHO05D003897 4.2e-23 114.0 280 31.8
Pp3c1_36100 Physcomitrium patens HOM05D003425 ORTHO05D003897 7.2e-23 113.2 275 29.5
AUR62014493 Chenopodium quinoa HOM05D003425 ORTHO05D003897 2.7e-22 111.3 272 29.8
BcaC04g21968 Brassica carinata HOM05D003425 ORTHO05D003897 2.3e-21 108.2 275 29.5
VMungo1309G3095 Vigna mungo HOM05D003425 ORTHO05D003897 3.0e-21 107.8 265 30.6
A09p20000 Brassica napus HOM05D003425 ORTHO05D003897 3.9e-21 107.5 275 29.1
TPR.G12467 Trifolium pratense HOM05D003425 ORTHO05D003897 3.9e-21 107.5 271 31.0
BcaB07g31042 Brassica carinata HOM05D003425 ORTHO05D003897 5.2e-21 107.1 275 30.2
Prupe.1G549800 Prunus persica HOM05D003425 ORTHO05D003897 5.2e-21 107.1 271 31.4
Prupe.1G375600 Prunus persica HOM05D003425 ORTHO05D003897 6.7e-21 106.7 268 31.3
Hund17177 Selenicereus undatus HOM05D003425 ORTHO05D003897 6.7e-21 106.7 260 31.9
Thecc.08G031800 Theobroma cacao HOM05D003425 ORTHO05D003897 8.8e-21 106.3 275 30.9
C09p25370 Brassica napus HOM05D003425 ORTHO05D003897 1.1e-20 105.9 275 29.1
Duzib041G0299 Durio zibethinus HOM05D003425 ORTHO05D003897 1.1e-20 105.9 270 30.4
Sc26g0003500 Simmondsia chinensis HOM05D003425 ORTHO05D003897 1.5e-20 105.5 277 31.8
BolC9t55437H Brassica oleracea HOM05D003425 ORTHO05D003897 2.0e-20 105.1 275 29.1
Psat5g016160 Pisum sativum HOM05D003425 ORTHO05D003897 2.0e-20 105.1 271 30.3
BraA09t37609Z Brassica rapa HOM05D003425 ORTHO05D003897 2.6e-20 104.8 275 28.7
Manes.05G156100 Manihot esculenta HOM05D003425 ORTHO05D003897 2.6e-20 104.8 270 31.1
Cfa013863 Carpinus fangiana HOM05D003425 ORTHO05D003897 3.3e-20 104.4 267 32.6
MD08G1026900 Malus domestica HOM05D003425 ORTHO05D003897 3.3e-20 104.4 265 32.5
MD15G1023500 Malus domestica HOM05D003425 ORTHO05D003897 3.3e-20 104.4 265 31.7
Phvul.009G060100 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 3.3e-20 104.4 264 29.5
Lj1g0002363 Lotus japonicus HOM05D003425 ORTHO05D003897 4.4e-20 104.0 272 31.6
CDE02G1177 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 7.4e-20 103.2 264 32.2
Sp2g07500 Schrenkiella parvula HOM05D003425 ORTHO05D003897 7.4e-20 103.2 272 28.3
Glyma.06G030100 Glycine max HOM05D003425 ORTHO05D003897 9.7e-20 102.8 271 30.3
Gohir.D06G003800 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.3e-19 102.4 276 30.4
Rhsim06G0029700 Rhododendron simsii HOM05D003425 ORTHO05D003897 1.3e-19 102.4 282 30.9
Gohir.A06G008100 Gossypium hirsutum HOM05D003425 ORTHO05D003897 1.7e-19 102.1 276 30.1
Potri.002G032900 Populus trichocarpa HOM05D003425 ORTHO05D003897 1.7e-19 102.1 264 30.3
Medtr3g112130 Medicago truncatula HOM05D003425 ORTHO05D003897 2.2e-19 101.7 271 30.3
Gorai.010G008400 Gossypium raimondii HOM05D003425 ORTHO05D003897 2.8e-19 101.3 276 30.1
Migut.C00755 Erythranthe guttata HOM05D003425 ORTHO05D003897 4.8e-19 100.5 268 30.2
RcHm_v2.0_Chr6g0301531 Rosa chinensis HOM05D003425 ORTHO05D003897 4.8e-19 100.5 271 29.5
AL1G35540 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 6.3e-19 100.1 262 29.8
Glyma.14G072200 Glycine max HOM05D003425 ORTHO05D003897 8.2e-19 99.8 281 29.9
BolC8t49775H Brassica oleracea HOM05D003425 ORTHO05D003897 1.1e-18 99.4 263 28.9
COL.COLO4_26258 Corchorus olitorius HOM05D003425 ORTHO05D003897 1.1e-18 99.4 269 30.5
Lalb_Chr22g0354631 Lupinus albus HOM05D003425 ORTHO05D003897 1.1e-18 99.4 270 28.9
CDE06G1246 Ceratophyllum demersum HOM05D003425 ORTHO05D003897 1.4e-18 99.0 262 30.2
Ciclev10001170m.g Citrus clementina HOM05D003425 ORTHO05D003897 1.4e-18 99.0 282 29.8
Duzib093G1530 Durio zibethinus HOM05D003425 ORTHO05D003897 1.4e-18 99.0 275 29.8
THA.LOC104814145 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 1.4e-18 99.0 275 28.7
Aqoxy6G01168 Aquilegia oxysepala HOM05D003425 ORTHO05D003897 1.8e-18 98.6 266 29.3
Cpa.g.sc99.35 Carica papaya HOM05D003425 ORTHO05D003897 1.8e-18 98.6 265 29.8
PSO541G3967 Papaver somniferum HOM05D003425 ORTHO05D003897 1.8e-18 98.6 278 29.5
Manes.18G020000 Manihot esculenta HOM05D003425 ORTHO05D003897 2.4e-18 98.2 263 30.0
AT1G22100 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 3.1e-18 97.8 263 29.3
CiPaw.07G158500 Carya illinoinensis HOM05D003425 ORTHO05D003897 3.1e-18 97.8 274 29.6
Sp1g19600 Schrenkiella parvula HOM05D003425 ORTHO05D003897 3.1e-18 97.8 263 28.5
Cpa.g.sc104.107 Carica papaya HOM05D003425 ORTHO05D003897 4.1e-18 97.4 281 29.5
Dinv36112 Davidia involucrata HOM05D003425 ORTHO05D003897 4.1e-18 97.4 277 31.0
HanXRQChr08g0236251 Helianthus annuus HOM05D003425 ORTHO05D003897 4.1e-18 97.4 268 29.1
PSO675G3885 Papaver somniferum HOM05D003425 ORTHO05D003897 4.1e-18 97.4 278 29.5
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 5.3e-18 97.1 263 28.5
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 5.3e-18 97.1 263 28.5
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 5.3e-18 97.1 263 28.5
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 5.3e-18 97.1 263 28.5
SalBow2G1759 Salvia bowleyana HOM05D003425 ORTHO05D003897 5.3e-18 97.1 271 30.6
FvH4_2g39440 Fragaria vesca HOM05D003425 ORTHO05D003897 7.0e-18 96.7 270 30.4
Medtr1g022475 Medicago truncatula HOM05D003425 ORTHO05D003897 7.0e-18 96.7 277 30.0
Phvul.001G012200 Phaseolus vulgaris HOM05D003425 ORTHO05D003897 7.0e-18 96.7 282 30.1
Pp3c14_17850 Physcomitrium patens HOM05D003425 ORTHO05D003897 7.0e-18 96.7 280 28.2
Atru.chr13.426 Acer truncatum HOM05D003425 ORTHO05D003897 9.1e-18 96.3 283 30.0
Lj5g0018838 Lotus japonicus HOM05D003425 ORTHO05D003897 9.1e-18 96.3 276 30.1
Potri.005G230200 Populus trichocarpa HOM05D003425 ORTHO05D003897 9.1e-18 96.3 276 28.6
Carub.0001s2165 Capsella rubella HOM05D003425 ORTHO05D003897 1.2e-17 95.9 268 29.1
Migut.C00703 Erythranthe guttata HOM05D003425 ORTHO05D003897 1.2e-17 95.9 271 29.2
Thhalv10007647m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 1.2e-17 95.9 264 28.4
Sed0012207 Sechium edule HOM05D003425 ORTHO05D003897 1.2e-17 95.9 277 29.6
TWI56G1347 Tripterygium wilfordii HOM05D003425 ORTHO05D003897 1.2e-17 95.9 270 30.7
AT5G42810 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 1.6e-17 95.5 275 27.3
Cre04.g226114 Chlamydomonas reinhardtii HOM05D003425 ORTHO05D003897 1.6e-17 95.5 105 57.1
Eucgr.F01873 Eucalyptus grandis HOM05D003425 ORTHO05D003897 1.6e-17 95.5 271 29.9
HanXRQChr05g0151701 Helianthus annuus HOM05D003425 ORTHO05D003897 2.0e-17 95.1 267 29.6
Hma1.2p1_0775F.1_g216480 Hydrangea macrophylla HOM05D003425 ORTHO05D003897 2.0e-17 95.1 275 29.8
SalBow7G0662 Salvia bowleyana HOM05D003425 ORTHO05D003897 2.0e-17 95.1 283 30.7
Glyma.04G030000 Glycine max HOM05D003425 ORTHO05D003897 2.6e-17 94.7 271 29.9
FAN27G0002 Fragaria x ananassa HOM05D003425 ORTHO05D003897 3.5e-17 94.4 273 30.0
Gohir.A05G191900 Gossypium hirsutum HOM05D003425 ORTHO05D003897 3.5e-17 94.4 268 29.1
Lsat_1_v5_gn_5_3401 Lactuca sativa HOM05D003425 ORTHO05D003897 4.5e-17 94.0 270 28.9
Lj4A789T47 Lonicera japonica HOM05D003425 ORTHO05D003897 4.5e-17 94.0 270 28.5
Lalb_Chr23g0266531 Lupinus albus HOM05D003425 ORTHO05D003897 4.5e-17 94.0 270 28.9
TAR625G0421 Trochodendron aralioides HOM05D003425 ORTHO05D003897 4.5e-17 94.0 278 29.1
arahy.Tifrunner.gnm1.ann1.P3QKDQ Arachis hypogaea HOM05D003425 ORTHO05D003897 5.9e-17 93.6 268 29.5
CSS0009417 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 5.9e-17 93.6 280 28.6
FAN20G1443 Fragaria x ananassa HOM05D003425 ORTHO05D003897 5.9e-17 93.6 274 29.6
Gohir.D05G195200 Gossypium hirsutum HOM05D003425 ORTHO05D003897 5.9e-17 93.6 268 29.1
Gorai.009G200000 Gossypium raimondii HOM05D003425 ORTHO05D003897 5.9e-17 93.6 268 29.1
Nitab4.5_0005911g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 5.9e-17 93.6 274 28.8
GSVIVG01009755001 Vitis vinifera HOM05D003425 ORTHO05D003897 5.9e-17 93.6 291 27.5
arahy.Tifrunner.gnm1.ann1.X2SRZK Arachis hypogaea HOM05D003425 ORTHO05D003897 7.7e-17 93.2 268 29.5
vmacro13340 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 7.7e-17 93.2 280 29.3
Cc10_g02550 Coffea canephora HOM05D003425 ORTHO05D003897 1.0e-16 92.8 268 28.0
Actinidia22523 Actinidia chinensis HOM05D003425 ORTHO05D003897 1.3e-16 92.4 278 29.9
arahy.Tifrunner.gnm1.ann1.2UC4WV Arachis hypogaea HOM05D003425 ORTHO05D003897 1.7e-16 92.0 271 29.9
Mapoly0027s0188 Marchantia polymorpha HOM05D003425 ORTHO05D003897 1.7e-16 92.0 267 30.3
ClCG08G014810 Citrullus lanatus HOM05D003425 ORTHO05D003897 2.2e-16 91.7 276 27.9
DCAR_009967 Daucus carota HOM05D003425 ORTHO05D003897 2.2e-16 91.7 263 30.4
Thhalv10003206m.g Eutrema salsugineum HOM05D003425 ORTHO05D003897 2.2e-16 91.7 278 27.0
Lsat_1_v5_gn_6_69620 Lactuca sativa HOM05D003425 ORTHO05D003897 2.2e-16 91.7 274 27.7
Nitab4.5_0003682g0010 Nicotiana tabacum HOM05D003425 ORTHO05D003897 2.2e-16 91.7 275 29.1
Aa31LG9G12880 Aethionema arabicum HOM05D003425 ORTHO05D003897 2.9e-16 91.3 288 27.4
Carub.0008s0609 Capsella rubella HOM05D003425 ORTHO05D003897 2.9e-16 91.3 273 27.1
CBR_g22893 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-16 91.3 212 31.6
CsaV3_2G028930 Cucumis sativus L. HOM05D003425 ORTHO05D003897 2.9e-16 91.3 278 27.7
Mapoly0027s0125 Marchantia polymorpha HOM05D003425 ORTHO05D003897 2.9e-16 91.3 264 29.9
ECA246G1007 Erigeron canadensis HOM05D003425 ORTHO05D003897 5.0e-16 90.5 268 29.5
MBI10_g00770_MAGBIO Magnolia biondii HOM05D003425 ORTHO05D003897 5.0e-16 90.5 269 27.1
Os04g0661200 Oryza sativa ssp. japonica HOM05D003425 ORTHO05D003897 5.0e-16 90.5 279 28.3
Zm00001eb432760 Zea mays HOM05D003425 ORTHO05D003897 5.0e-16 90.5 280 28.9
ClCG05G018770 Citrullus lanatus HOM05D003425 ORTHO05D003897 6.5e-16 90.1 269 28.3
MELO3C010962.2 Cucumis melo HOM05D003425 ORTHO05D003897 6.5e-16 90.1 276 27.5
Sed0018986 Sechium edule HOM05D003425 ORTHO05D003897 6.5e-16 90.1 266 28.2
arahy.Tifrunner.gnm1.ann1.2NS234 Arachis hypogaea HOM05D003425 ORTHO05D003897 8.5e-16 89.7 261 30.7
CARHR022450 Cardamine hirsuta HOM05D003425 ORTHO05D003897 8.5e-16 89.7 264 28.4
DCAR_017527 Daucus carota HOM05D003425 ORTHO05D003897 8.5e-16 89.7 267 30.7
Carub.0002s0599 Capsella rubella HOM05D003425 ORTHO05D003897 1.1e-15 89.4 266 28.2
ECA233G5099 Erigeron canadensis HOM05D003425 ORTHO05D003897 1.1e-15 89.4 275 27.6
THA.LOC104813817 Tarenaya hassleriana HOM05D003425 ORTHO05D003897 1.5e-15 89.0 266 28.2
Solyc04g080670.3 Solanum lycopersicum HOM05D003425 ORTHO05D003897 1.9e-15 88.6 264 29.5
Oeu063611.1 Olea europaea HOM05D003425 ORTHO05D003897 2.5e-15 88.2 272 30.5
SEGI_18330 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 2.5e-15 88.2 264 26.9
PGSC0003DMG400003698 Solanum tuberosum HOM05D003425 ORTHO05D003897 2.5e-15 88.2 264 29.2
CANSAT80G1124 Cannabis sativa HOM05D003425 ORTHO05D003897 3.2e-15 87.8 279 27.6
Sopen04g034260 Solanum pennellii HOM05D003425 ORTHO05D003897 3.2e-15 87.8 264 29.2
CAN.G710.1 Capsicum annuum HOM05D003425 ORTHO05D003897 4.2e-15 87.4 262 29.4
MELO3C003802.2 Cucumis melo HOM05D003425 ORTHO05D003897 7.2e-15 86.7 269 28.3
CsaV3_3G045400 Cucumis sativus L. HOM05D003425 ORTHO05D003897 3.6e-14 84.3 271 28.4
AL2G17640 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 6.1e-14 83.6 267 27.3
PGR031G1797 Punica granatum HOM05D003425 ORTHO05D003897 6.1e-14 83.6 248 30.2
Aa31LG7G6080 Aethionema arabicum HOM05D003425 ORTHO05D003897 8.0e-14 83.2 267 27.0
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 8.0e-14 83.2 264 27.7
TPR.G14394 Trifolium pratense HOM05D003425 ORTHO05D003897 1.0e-13 82.8 273 26.7
Oeu030423.1 Olea europaea HOM05D003425 ORTHO05D003897 1.4e-13 82.4 266 28.6
Zm00001eb067500 Zea mays HOM05D003425 ORTHO05D003897 1.8e-13 82.0 280 26.8
AT1G58643 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 2.3e-13 81.6 266 25.9
AT1G58936 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 2.3e-13 81.6 266 25.9
AT1G59312 Arabidopsis thaliana HOM05D003425 ORTHO05D003897 2.3e-13 81.6 266 25.9
Nn5g29685 Nelumbo nucifera HOM05D003425 ORTHO05D003897 3.0e-13 81.3 323 24.5
SGA_v2.0_scaffold201G41381 Striga asiatica HOM05D003425 ORTHO05D003897 3.0e-13 81.3 305 27.9
vmacro21674 Vaccinium macrocarpon HOM05D003425 ORTHO05D003897 8.8e-13 79.7 284 30.3
Ca_15494_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 1.5e-12 79.0 295 27.5
Haze_22537 Corylus avellana HOM05D003425 ORTHO05D003897 1.5e-12 79.0 260 27.7
AL8G18220 Arabidopsis lyrata HOM05D003425 ORTHO05D003897 6.3e-11 73.6 199 27.6
Peaxi162Scf00028g00119 Petunia axillaris HOM05D003425 ORTHO05D003897 6.3e-11 73.6 250 28.4
Ca_18048_v3 Cicer arietinum L. HOM05D003425 ORTHO05D003897 8.3e-11 73.2 210 30.0
EL10Ac1g00639 Beta vulgaris HOM05D003425 ORTHO05D003897 2.4e-10 71.6 239 27.2
ATR0568G131 Amborella trichopoda HOM05D003425 ORTHO05D003897 5.3e-10 70.5 251 27.9
SHI08133 Sapria himalayana HOM05D003425 ORTHO05D003897 2.7e-09 68.2 259 27.8
C07p21730 Brassica napus HOM05D003425 ORTHO05D003897 4.5e-09 67.4 236 25.8
BolC7t42703H Brassica oleracea HOM05D003425 ORTHO05D003897 4.5e-09 67.4 236 25.8
SEGI_21240 Sequoiadendron giganteum HOM05D003425 ORTHO05D003897 5.9e-09 67.0 137 33.6
PRCOL_00004287 Prasinoderma coloniale HOM05D003425 ORTHO05D003897 1.0e-08 66.2 326 25.2
Ah.05g176930 Amaranthus hybridus HOM05D003425 ORTHO05D003897 2.2e-08 65.1 255 26.3
VMungo0647G0080 Vigna mungo HOM05D003425 ORTHO05D003897 2.9e-08 64.7 143 32.9
AUR62044165 Chenopodium quinoa HOM05D003425 ORTHO05D003897 1.1e-07 62.8 263 25.9
Psat6g009400 Pisum sativum HOM05D003425 ORTHO05D003897 1.9e-07 62.0 194 28.4
CSS0020037 Camellia sinensis var. sinensis HOM05D003425 ORTHO05D003897 1.2e-06 59.3 274 24.5
AagrBONN_evm.TU.Sc2ySwM_362.197 Anthoceros agrestis HOM05D003425 ORTHO05D003897 2.1e-06 58.5 147 29.9
Lj2A96T68 Lonicera japonica HOM05D003425 ORTHO05D003897 2.1e-06 58.5 340 25.9
Sed0022647 Sechium edule HOM05D003425 ORTHO05D003897 3.6e-06 57.8 218 25.7


User provided reference genes

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