Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 0.0e+00 1553.1 1175 100.0
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 1.3e-107 395.6 436 47.7
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 1.5e-106 392.1 429 47.1
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 6.2e-105 386.7 446 44.2
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 8.1e-105 386.3 430 47.9
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 4.0e-104 384.0 434 46.5
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 2.0e-103 381.7 442 44.1
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 3.4e-103 380.9 441 46.0
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 1.7e-102 378.6 440 44.8
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.1e-101 375.9 437 46.0
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 2.5e-101 374.8 445 44.3
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 5.5e-101 373.6 443 44.9
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 9.3e-101 372.9 449 43.4
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 4.6e-100 370.5 437 43.2
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 7.9e-100 369.8 437 43.9
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 5.1e-99 367.1 442 44.8
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 8.7e-99 366.3 434 44.5
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 8.7e-99 366.3 444 43.7
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 1.1e-98 365.9 435 43.9
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.5e-98 365.5 446 42.6
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 2.5e-98 364.8 429 45.7
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.5e-98 364.8 443 43.8
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 3.3e-98 364.4 446 44.6
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 4.3e-98 364.0 442 43.4
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 5.7e-98 363.6 447 44.5
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 5.7e-98 363.6 451 41.9
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 9.6e-98 362.8 427 45.0
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 1.3e-97 362.5 439 44.2
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 1.6e-97 362.1 446 44.8
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 2.1e-97 361.7 431 43.9
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 2.1e-97 361.7 443 42.9
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 2.1e-97 361.7 439 42.6
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 3.7e-97 360.9 444 42.6
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 4.8e-97 360.5 443 44.0
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 6.3e-97 360.1 447 42.5
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 8.2e-97 359.8 430 43.0
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 8.2e-97 359.8 430 42.6
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.1e-96 359.4 438 42.9
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 1.1e-96 359.4 473 43.3
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 1.4e-96 359.0 429 43.1
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.4e-96 358.2 439 43.1
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 2.4e-96 358.2 442 41.9
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 3.1e-96 357.8 444 42.8
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 3.1e-96 357.8 444 42.8
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 4.1e-96 357.5 431 42.5
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 5.3e-96 357.1 443 42.2
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 9.0e-96 356.3 444 42.8
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 9.0e-96 356.3 473 43.3
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.5e-95 355.5 468 42.1
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 2.0e-95 355.1 448 44.6
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.0e-95 355.1 439 42.8
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 5.9e-95 353.6 439 42.4
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 1.0e-94 352.8 446 42.8
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 1.7e-94 352.1 453 42.2
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 5.0e-94 350.5 434 42.6
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 5.0e-94 350.5 441 42.9
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 5.0e-94 350.5 440 42.7
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 8.5e-94 349.7 437 42.3
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 3.2e-93 347.8 435 43.7
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 9.3e-93 346.3 431 41.8
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.1e-92 345.1 444 43.0
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 2.7e-92 344.7 446 40.4
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 6.1e-92 343.6 374 47.9
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 6.1e-92 343.6 446 41.5
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.0e-91 342.8 420 40.7
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 1.3e-91 342.4 442 42.1
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 1.8e-91 342.0 440 42.5
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.8e-91 342.0 446 41.5
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 2.3e-91 341.7 435 41.1
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 2.3e-91 341.7 438 42.0
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 1.5e-90 339.0 443 45.4
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 3.3e-90 337.8 378 47.1
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.8e-89 334.7 441 43.1
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 3.7e-89 334.3 443 43.6
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 9.1e-88 329.7 406 43.1
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 9.1e-88 329.7 440 40.5
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 2.2e-86 325.1 362 46.1
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 2.9e-86 324.7 434 39.6
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 6.5e-86 323.6 362 45.0
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 5.5e-85 320.5 429 40.8
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 5.5e-85 320.5 432 40.0
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 5.5e-85 320.5 444 39.9
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 1.2e-84 319.3 479 38.0
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 2.3e-83 315.1 384 42.7
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 5.1e-83 313.9 368 46.2
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.1e-83 313.9 444 40.8
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 3.3e-82 311.2 487 37.6
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 9.7e-82 309.7 408 41.4
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 9.7e-82 309.7 433 41.6
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.8e-81 308.1 423 40.4
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 6.5e-78 297.0 305 47.9
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.1e-77 296.2 468 37.6
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.4e-77 295.8 422 37.4
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 7.2e-77 293.5 443 39.5
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 3.6e-76 291.2 313 48.2
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.5e-74 285.8 443 38.8
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 2.0e-74 285.4 440 40.7
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 5.3e-72 277.3 491 35.6
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 4.5e-71 274.2 311 43.7
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.1e-68 265.4 441 37.6
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 8.0e-68 263.5 352 40.1
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 3.3e-66 258.1 425 37.6
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 5.9e-63 247.3 322 42.5
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.7e-62 245.7 446 36.1
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 4.2e-61 241.1 298 45.3
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 2.1e-60 238.8 303 43.2
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 1.8e-59 235.7 511 34.2
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 2.4e-48 198.7 216 47.2
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 2.7e-47 195.3 326 39.3
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 5.6e-45 187.6 245 45.7
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 8.3e-41 173.7 195 49.2
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.2e-39 169.9 341 34.0
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.7e-38 166.0 204 41.7
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.9e-37 162.5 164 45.1
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.1e-35 156.8 189 40.2
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 1.2e-34 153.3 173 41.6
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 4.9e-33 147.9 218 41.3
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.9e-32 146.0 140 51.4
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 1.6e-31 142.9 291 35.7
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 6.8e-27 127.5 149 41.6
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 2.0e-26 125.9 163 36.2
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 2.9e-25 122.1 267 29.6
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 7.1e-24 117.5 173 41.0
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.5e-21 109.0 190 38.4
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 3.3e-21 108.6 213 38.0
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 3.3e-21 108.6 130 46.9
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 6.2e-20 104.4 85 55.3
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.1e-19 103.6 138 42.8
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.2e-19 101.3 134 40.3
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 4.9e-17 94.7 140 37.1
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 2.4e-16 92.4 131 41.2
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 3.5e-15 88.6 100 41.0
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 3.3e-13 82.0 99 37.4
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 3.4e-10 72.0 73 47.9
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.7e-09 69.7 104 41.3
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 2.9e-09 68.9 121 37.2
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 8.4e-09 67.4 99 40.4
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 1.4e-08 66.6 128 29.7
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.9e-08 66.2 86 38.4
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 3.5e-07 62.0 86 34.9
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.7e-06 59.7 96 36.5
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.3e-06 59.3 89 32.6
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 3.9e-06 58.5 78 38.5


User provided reference genes

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