Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g218050 Chlamydomonas reinhardtii HOM05D001516 ORTHO05D146876 0.0e+00 2070.8 1840 100.0
Cre01.g004600 Chlamydomonas reinhardtii HOM05D022908 ORTHO05D144444 3.1e-18 99.4 108 39.8
Cre09.g387850 Chlamydomonas reinhardtii HOM05D001516 ORTHO05D144375 7.7e-17 94.7 134 41.0
Cre03.g153050 Chlamydomonas reinhardtii HOM05D001516 ORTHO05D139119 3.9e-13 82.4 118 37.3
Cre06.g297150 Chlamydomonas reinhardtii HOM05D001516 ORTHO05D001357 5.7e-12 78.6 116 35.3
CANSAT21G0435 Cannabis sativa HOM05D001516 ORTHO05D001357 1.8e-10 73.6 107 39.3
Cre06.g275550 Chlamydomonas reinhardtii HOM05D022908 ORTHO05D001357 1.8e-10 73.6 99 33.3
Cre03.g184600 Chlamydomonas reinhardtii HOM05D001516 ORTHO05D001357 4.1e-10 72.4 105 36.2
THA.LOC104825152 Tarenaya hassleriana HOM05D001516 ORTHO05D001357 1.3e-08 67.4 106 36.8
CAN.G481.21 Capsicum annuum HOM05D001516 ORTHO05D001357 2.9e-08 66.2 106 37.7
FAN06G2602 Fragaria x ananassa HOM05D001516 ORTHO05D001357 3.8e-08 65.9 114 34.2
Nitab4.5_0007888g0010 Nicotiana tabacum HOM05D001516 ORTHO05D001357 3.8e-08 65.9 106 34.9
Peaxi162Scf00740g00141 Petunia axillaris HOM05D001516 ORTHO05D001357 3.8e-08 65.9 107 34.6
Prupe.2G308900 Prunus persica HOM05D001516 ORTHO05D001357 5.0e-08 65.5 112 34.8
CsaV3_3G019780 Cucumis sativus L. HOM05D001516 ORTHO05D001357 6.5e-08 65.1 104 34.6
MD01G1217600 Malus domestica HOM05D001516 ORTHO05D001357 6.5e-08 65.1 107 38.3
FAN03G2432 Fragaria x ananassa HOM05D001516 ORTHO05D001357 1.1e-07 64.3 114 32.5
Nitab4.5_0005514g0030 Nicotiana tabacum HOM05D001516 ORTHO05D001357 1.1e-07 64.3 106 34.0
Cre03.g149350 Chlamydomonas reinhardtii HOM05D001516 ORTHO05D001357 1.5e-07 63.9 119 33.6
Cre03.g149400 Chlamydomonas reinhardtii HOM05D001516 ORTHO05D001357 1.5e-07 63.9 118 31.4
Lj1C1021G15 Lonicera japonica HOM05D001516 ORTHO05D001357 1.5e-07 63.9 116 35.3
Potri.015G011800 Populus trichocarpa HOM05D001516 ORTHO05D001357 1.5e-07 63.9 115 34.8
PGSC0003DMG400018531 Solanum tuberosum HOM05D001516 ORTHO05D001357 1.5e-07 63.9 124 32.3
CARHR266050 Cardamine hirsuta HOM05D001516 ORTHO05D001357 1.9e-07 63.5 113 33.6
Ca_05457_v3 Cicer arietinum L. HOM05D001516 ORTHO05D001357 1.9e-07 63.5 104 31.7
FAN01G1019 Fragaria x ananassa HOM05D001516 ORTHO05D001357 1.9e-07 63.5 114 32.5
FAN06G1894 Fragaria x ananassa HOM05D001516 ORTHO05D001357 1.9e-07 63.5 114 33.3
Manes.14G078300 Manihot esculenta HOM05D001516 ORTHO05D001357 1.9e-07 63.5 119 31.1
Psat4g050920 Pisum sativum HOM05D001516 ORTHO05D001357 1.9e-07 63.5 116 32.8
Potri.012G016800 Populus trichocarpa HOM05D001516 ORTHO05D001357 1.9e-07 63.5 116 35.3
RcHm_v2.0_Chr1g0380421 Rosa chinensis HOM05D001516 ORTHO05D001357 1.9e-07 63.5 114 33.3
DCAR_020332 Daucus carota HOM05D001516 ORTHO05D001357 2.5e-07 63.2 117 33.3
Migut.F01022 Erythranthe guttata HOM05D001516 ORTHO05D001357 2.5e-07 63.2 118 33.1
Sabra15G0009500 Salix brachista HOM05D001516 ORTHO05D001357 2.5e-07 63.2 105 35.2
Solyc03g083040.1 Solanum lycopersicum HOM05D001516 ORTHO05D001357 2.5e-07 63.2 106 34.9
Sabra12G0015600 Salix brachista HOM05D001516 ORTHO05D001357 3.2e-07 62.8 116 35.3
Sed0019456 Sechium edule HOM05D001516 ORTHO05D001357 3.2e-07 62.8 114 35.1
AL8G27660 Arabidopsis lyrata HOM05D001516 ORTHO05D001357 4.2e-07 62.4 113 31.9
BcaC04g20514 Brassica carinata HOM05D001516 ORTHO05D001357 4.2e-07 62.4 112 33.0
BolC9t57150H Brassica oleracea HOM05D001516 ORTHO05D001357 4.2e-07 62.4 112 33.0
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 4.2e-07 62.4 136 29.4
AT5G66990 Arabidopsis thaliana HOM05D001516 ORTHO05D001357 5.5e-07 62.0 116 31.0
Psat5g182200 Pisum sativum HOM05D001516 ORTHO05D001357 5.5e-07 62.0 104 30.8
TPR.G9267 Trifolium pratense HOM05D001516 ORTHO05D001357 5.5e-07 62.0 109 31.2
AL1031U10020 Arabidopsis lyrata HOM05D001516 ORTHO05D001357 7.2e-07 61.6 123 30.1
AL2G23160 Arabidopsis lyrata HOM05D001516 ORTHO05D001357 7.2e-07 61.6 123 30.1
AL8G44380 Arabidopsis lyrata HOM05D001516 ORTHO05D001357 7.2e-07 61.6 123 30.1
BcaB08g35663 Brassica carinata HOM05D001516 ORTHO05D001357 7.2e-07 61.6 112 33.0
A10p10520 Brassica napus HOM05D001516 ORTHO05D001357 7.2e-07 61.6 112 33.0
C09p42740 Brassica napus HOM05D001516 ORTHO05D001357 7.2e-07 61.6 112 33.0
BraA10t43136Z Brassica rapa HOM05D001516 ORTHO05D001357 7.2e-07 61.6 112 33.0
ECA232G4475 Erigeron canadensis HOM05D000623 ORTHO05D001357 7.2e-07 61.6 137 31.4
Oeu010694.1 Olea europaea HOM05D001516 ORTHO05D001357 7.2e-07 61.6 126 31.0
Phvul.009G186900 Phaseolus vulgaris HOM05D001516 ORTHO05D001357 7.2e-07 61.6 103 34.0
AT5G53040 Arabidopsis thaliana HOM05D001516 ORTHO05D001357 9.4e-07 61.2 113 31.9
FvH4_7g31350 Fragaria vesca HOM05D001516 ORTHO05D001357 9.4e-07 61.2 58 46.6
Lj1A1018G73 Lonicera japonica HOM05D001516 ORTHO05D001357 9.4e-07 61.2 118 33.1
Oeu037181.1 Olea europaea HOM05D001516 ORTHO05D001357 9.4e-07 61.2 125 32.0
AUR62021674 Chenopodium quinoa HOM05D000001 ORTHO05D009806 1.2e-06 60.8 112 33.9
MD07G1286800 Malus domestica HOM05D001516 ORTHO05D001357 1.2e-06 60.8 112 33.0
PGR083G1206 Punica granatum HOM05D001516 ORTHO05D001357 1.2e-06 60.8 124 27.4
TPR.G11841 Trifolium pratense HOM05D001516 ORTHO05D001357 1.2e-06 60.8 102 33.3
VMungo1309G2066 Vigna mungo HOM05D001516 ORTHO05D001357 1.2e-06 60.8 103 33.0
arahy.Tifrunner.gnm1.ann1.P8HI4P Arachis hypogaea HOM05D001516 ORTHO05D001357 1.6e-06 60.5 104 32.7
Gohir.D03G115300 Gossypium hirsutum HOM05D001516 ORTHO05D001357 1.6e-06 60.5 109 30.3
Actinidia34228 Actinidia chinensis HOM05D001516 ORTHO05D001357 2.1e-06 60.1 124 32.3
BraA08t34954Z Brassica rapa HOM05D001516 ORTHO05D001357 2.1e-06 60.1 123 29.3
CBR_g4065 Chara braunii HOM05D001516 ORTHO05D001357 2.1e-06 60.1 104 30.8
Haze_00201 Corylus avellana HOM05D001516 ORTHO05D001357 2.1e-06 60.1 119 31.9
MELO3C016458.2 Cucumis melo HOM05D001516 ORTHO05D001357 2.1e-06 60.1 120 30.0
Thhalv10015321m.g Eutrema salsugineum HOM05D001516 ORTHO05D001357 2.1e-06 60.1 106 33.0
Gohir.A03G051800 Gossypium hirsutum HOM05D001516 ORTHO05D001357 2.1e-06 60.1 109 30.3
Gorai.003G121600 Gossypium raimondii HOM05D001516 ORTHO05D001357 2.1e-06 60.1 109 30.3
Lj1g0018954 Lotus japonicus HOM05D001516 ORTHO05D001357 2.1e-06 60.1 102 35.3
Phvul.009G051600 Phaseolus vulgaris HOM05D001516 ORTHO05D001357 2.1e-06 60.1 105 34.3
QL09p008660 Quercus lobata HOM05D001516 ORTHO05D001357 2.1e-06 60.1 113 31.9
TAR622G1447 Trochodendron aralioides HOM05D001516 ORTHO05D001357 2.1e-06 60.1 102 33.3
Carub.0008s1323 Capsella rubella HOM05D001516 ORTHO05D001357 2.7e-06 59.7 114 30.7
CARHR280690 Cardamine hirsuta HOM05D001516 ORTHO05D001357 2.7e-06 59.7 111 32.4
CDE08G0094 Ceratophyllum demersum HOM05D000425 ORTHO05D001357 2.7e-06 59.7 111 30.6
Glyma.04G169000 Glycine max HOM05D001516 ORTHO05D001357 2.7e-06 59.7 103 35.0
Lj1g0009135 Lotus japonicus HOM05D001516 ORTHO05D001357 2.7e-06 59.7 126 29.4
Oeu002100.1 Olea europaea HOM05D001516 ORTHO05D001357 2.7e-06 59.7 100 33.0
SEGI_20655 Sequoiadendron giganteum HOM05D001516 ORTHO05D001357 2.7e-06 59.7 108 33.3
Thecc.03G200500 Theobroma cacao HOM05D001516 ORTHO05D001357 2.7e-06 59.7 108 31.5
unitig_0.g2521 Utricularia gibba HOM05D001516 ORTHO05D001357 2.7e-06 59.7 107 33.6
EL10Ac5g11022 Beta vulgaris HOM05D001516 ORTHO05D001357 3.6e-06 59.3 113 33.6
A08p30210 Brassica napus HOM05D001516 ORTHO05D001357 3.6e-06 59.3 122 28.7
CSS0016781 Camellia sinensis var. sinensis HOM05D001516 ORTHO05D001357 3.6e-06 59.3 57 45.6
Cfa016240 Carpinus fangiana HOM05D001516 ORTHO05D001357 3.6e-06 59.3 105 32.4
Medtr3g435550 Medicago truncatula HOM05D001516 ORTHO05D001357 3.6e-06 59.3 99 31.3
Phvul.003G189900 Phaseolus vulgaris HOM05D001516 ORTHO05D001357 3.6e-06 59.3 103 33.0
Sp7g33360 Schrenkiella parvula HOM05D001516 ORTHO05D001357 3.6e-06 59.3 111 28.8
SEGI_26765 Sequoiadendron giganteum HOM05D001516 ORTHO05D001357 3.6e-06 59.3 105 36.2
SGA_v2.0_scaffold55G19777 Striga asiatica HOM05D001516 ORTHO05D001357 3.6e-06 59.3 121 31.4
vmacro17540 Vaccinium macrocarpon HOM05D001516 ORTHO05D001357 3.6e-06 59.3 124 30.6
arahy.Tifrunner.gnm1.ann1.F3ZCPW Arachis hypogaea HOM05D001516 ORTHO05D001357 4.7e-06 58.9 122 31.1
arahy.Tifrunner.gnm1.ann1.ZR07MJ Arachis hypogaea HOM05D001516 ORTHO05D001357 4.7e-06 58.9 122 31.1
BcaC07g38946 Brassica carinata HOM05D001516 ORTHO05D001357 4.7e-06 58.9 122 28.7
C08p18930 Brassica napus HOM05D002208 ORTHO05D002333 4.7e-06 58.9 122 28.7
BolC8t49517H Brassica oleracea HOM05D001516 ORTHO05D001357 4.7e-06 58.9 122 28.7
Carub.0002s2128 Capsella rubella HOM05D001516 ORTHO05D001357 4.7e-06 58.9 126 29.4
Carub.0008s2751 Capsella rubella HOM05D001516 ORTHO05D001357 4.7e-06 58.9 118 28.8
Lj5A110G125 Lonicera japonica HOM05D001516 ORTHO05D001357 4.7e-06 58.9 113 31.0
Os04g0564000 Oryza sativa ssp. japonica HOM05D001516 ORTHO05D001357 4.7e-06 58.9 52 48.1
PSO063G5882 Papaver somniferum HOM05D001516 ORTHO05D001357 4.7e-06 58.9 105 28.6
SalBow2G3532 Salvia bowleyana HOM05D001516 ORTHO05D001357 4.7e-06 58.9 110 32.7
Sp6g15190 Schrenkiella parvula HOM05D001516 ORTHO05D001357 4.7e-06 58.9 106 31.1
Thecc.03G250200 Theobroma cacao HOM05D004557 ORTHO05D005258 4.7e-06 58.9 82 37.8
DCAR_026052 Daucus carota HOM05D001516 ORTHO05D001357 6.1e-06 58.5 117 29.9
Thhalv10009845m.g Eutrema salsugineum HOM05D001516 ORTHO05D001357 6.1e-06 58.5 116 29.3
Thhalv10019554m.g Eutrema salsugineum HOM05D001516 ORTHO05D001357 6.1e-06 58.5 114 29.8
Hma1.2p1_0404F.1_g145260 Hydrangea macrophylla HOM05D001516 ORTHO05D001357 6.1e-06 58.5 111 29.7
Oeu047294.1 Olea europaea HOM05D001516 ORTHO05D001357 6.1e-06 58.5 100 34.0
Actinidia08658 Actinidia chinensis HOM05D001516 ORTHO05D001357 8.0e-06 58.2 71 42.3
A07p40290 Brassica napus HOM05D001516 ORTHO05D001357 8.0e-06 58.2 115 31.3
BraA07t31572Z Brassica rapa HOM05D001516 ORTHO05D001357 8.0e-06 58.2 115 31.3
COL.COLO4_16774 Corchorus olitorius HOM05D001516 ORTHO05D001357 8.0e-06 58.2 108 30.6
Duzib205G0600 Durio zibethinus HOM05D001516 ORTHO05D001357 8.0e-06 58.2 108 31.5
Glyma.04G234600 Glycine max HOM05D001516 ORTHO05D001357 8.0e-06 58.2 104 35.6
Lj4g0012567 Lotus japonicus HOM05D001516 ORTHO05D001357 8.0e-06 58.2 107 32.7
VMungo1215G0517 Vigna mungo HOM05D001516 ORTHO05D001357 8.0e-06 58.2 103 32.0


User provided reference genes

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