Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g217949 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 0.0e+00 1454.5 778 100.0
Cre07.g340950 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.3e-78 297.4 556 34.0
Cre01.g000400 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.1e-76 290.8 568 33.1
Cre01.g000450 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 4.2e-73 280.4 491 33.4
Cre01.g000500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.8e-58 230.7 551 29.0
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 1.3e-42 179.1 464 28.9
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 1.3e-42 179.1 468 28.4
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 1.3e-42 179.1 470 28.7
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 1.7e-42 178.7 468 27.8
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 5.0e-42 177.2 465 29.0
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 6.5e-42 176.8 464 28.4
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 6.5e-42 176.8 468 28.8
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 6.5e-42 176.8 467 28.5
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 8.5e-42 176.4 466 28.5
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 1.4e-41 175.6 469 29.0
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 1.4e-41 175.6 470 28.1
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 1.4e-41 175.6 467 28.7
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 1.9e-41 175.3 471 28.0
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 2.5e-41 174.9 467 27.8
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 2.5e-41 174.9 478 27.2
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 2.5e-41 174.9 465 28.8
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 5.5e-41 173.7 466 26.6
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 5.5e-41 173.7 467 28.1
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 5.5e-41 173.7 465 28.8
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 7.2e-41 173.3 465 28.4
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 7.2e-41 173.3 469 26.4
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 7.2e-41 173.3 466 29.0
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 9.4e-41 172.9 470 28.3
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 9.4e-41 172.9 465 28.2
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 1.2e-40 172.6 465 28.6
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 1.2e-40 172.6 467 27.6
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 1.6e-40 172.2 456 26.8
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 2.1e-40 171.8 466 26.4
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 2.1e-40 171.8 476 29.0
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 2.7e-40 171.4 456 27.9
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 2.7e-40 171.4 480 28.5
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 2.7e-40 171.4 468 27.4
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 3.6e-40 171.0 469 26.4
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 3.6e-40 171.0 465 26.7
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 3.6e-40 171.0 465 26.7
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 3.6e-40 171.0 465 26.7
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 3.6e-40 171.0 470 28.9
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 3.6e-40 171.0 469 28.4
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 4.7e-40 170.6 470 27.2
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 4.7e-40 170.6 470 27.2
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 4.7e-40 170.6 470 27.2
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 4.7e-40 170.6 469 26.7
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 6.1e-40 170.2 468 28.2
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 7.9e-40 169.9 471 28.9
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 7.9e-40 169.9 456 28.3
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 7.9e-40 169.9 460 28.5
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 7.9e-40 169.9 466 27.7
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 1.0e-39 169.5 466 27.5
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 1.4e-39 169.1 470 26.0
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 1.4e-39 169.1 466 26.6
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 1.4e-39 169.1 466 26.6
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 1.4e-39 169.1 469 26.2
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 1.4e-39 169.1 475 28.2
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.4e-39 169.1 484 27.7
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 1.4e-39 169.1 483 27.1
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 1.4e-39 169.1 464 27.6
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 1.8e-39 168.7 467 27.8
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 1.8e-39 168.7 485 27.6
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 1.8e-39 168.7 487 26.5
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 1.8e-39 168.7 465 28.2
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 2.3e-39 168.3 469 26.2
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 2.3e-39 168.3 469 26.2
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 3.0e-39 167.9 468 26.5
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 3.0e-39 167.9 470 28.7
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 3.9e-39 167.5 472 26.9
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 5.1e-39 167.2 466 25.8
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 5.1e-39 167.2 464 26.7
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 5.1e-39 167.2 464 26.9
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 6.7e-39 166.8 468 28.2
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 8.8e-39 166.4 466 27.0
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 8.8e-39 166.4 484 27.7
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 1.1e-38 166.0 464 26.9
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 1.5e-38 165.6 459 28.3
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 2.6e-38 164.9 464 26.7
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 2.6e-38 164.9 467 27.6
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 2.6e-38 164.9 459 27.9
QL12p003762 Quercus lobata HOM05D003542 ORTHO05D004799 2.6e-38 164.9 462 27.9
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 3.3e-38 164.5 467 27.6
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 3.3e-38 164.5 467 27.8
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 5.7e-38 163.7 457 27.8
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 5.7e-38 163.7 457 27.8
Atru.chr8.2622 Acer truncatum HOM05D003542 ORTHO05D004799 7.4e-38 163.3 443 27.3
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 7.4e-38 163.3 471 28.5
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 7.4e-38 163.3 469 27.3
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 9.7e-38 162.9 464 26.7
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 9.7e-38 162.9 464 26.9
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 1.7e-37 162.2 459 27.5
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 1.7e-37 162.2 464 27.4
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 1.7e-37 162.2 488 26.8
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 2.2e-37 161.8 500 27.2
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 2.2e-37 161.8 464 26.9
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 2.8e-37 161.4 466 28.3
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 3.7e-37 161.0 464 28.4
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 3.7e-37 161.0 464 26.9
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 4.8e-37 160.6 468 27.4
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 4.8e-37 160.6 467 27.2
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 6.3e-37 160.2 489 25.8
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 6.3e-37 160.2 470 27.4
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 6.3e-37 160.2 476 27.5
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 8.2e-37 159.8 539 26.0
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 8.2e-37 159.8 464 27.4
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 8.2e-37 159.8 464 27.4
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 1.8e-36 158.7 491 28.7
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 2.4e-36 158.3 468 26.7
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 4.1e-36 157.5 467 27.2
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 5.3e-36 157.1 430 27.0
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 5.3e-36 157.1 477 27.7
Cre13.g568200 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 9.1e-36 156.4 464 25.6
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 2.6e-35 154.8 469 26.9
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 4.5e-35 154.1 381 29.7
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 5.9e-35 153.7 478 27.8
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 5.9e-35 153.7 470 26.6
HPP92_014853 Vanilla planifolia HOM05D003542 ORTHO05D004799 7.7e-35 153.3 463 25.7
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.0e-34 152.9 469 26.9
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 1.0e-34 152.9 470 26.8
MCO06G136 Micromonas commoda HOM05D003542 ORTHO05D004799 1.0e-34 152.9 462 26.8
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 8.5e-34 149.8 463 27.4
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 8.5e-34 149.8 378 29.9
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 4.2e-33 147.5 479 26.5
PRCOL_00007053 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 5.5e-33 147.1 557 25.1
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 2.7e-32 144.8 369 30.1
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 3.6e-32 144.4 371 29.6
Cre07.g332500 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 3.6e-32 144.4 487 25.5
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 4.7e-32 144.1 463 25.9
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 4.7e-32 144.1 479 27.1
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.8e-31 142.1 380 27.6
Gohir.A12G201400 Gossypium hirsutum HOM05D003542 ORTHO05D004799 2.3e-31 141.7 371 29.1
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 3.0e-31 141.4 400 28.5
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 5.2e-31 140.6 371 28.3
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 6.7e-31 140.2 380 27.1
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 6.7e-31 140.2 408 27.2
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 8.8e-31 139.8 391 28.4
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 1.5e-30 139.0 464 25.6
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 1.5e-30 139.0 380 29.2
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 7.4e-30 136.7 452 27.0
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 1.7e-29 135.6 366 27.3
PRCOL_00003662 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 8.2e-29 133.3 473 25.8
BcaC02g11616 Brassica carinata HOM05D003542 ORTHO05D004799 2.4e-28 131.7 405 25.9
Cre14.g629000 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 7.7e-27 126.7 492 27.2
MCO09G799 Micromonas commoda HOM05D003542 ORTHO05D004799 1.0e-26 126.3 463 26.3
PRCOL_00003997 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 8.5e-26 123.2 517 24.0
Zm00001eb049170 Zea mays HOM05D003542 ORTHO05D004799 1.9e-25 122.1 340 27.1
TAR374G1176 Trochodendron aralioides HOM05D003542 ORTHO05D004799 9.4e-25 119.8 302 27.8
vmacro00095 Vaccinium macrocarpon HOM05D003542 ORTHO05D004799 1.2e-24 119.4 392 24.5
Sed0024265 Sechium edule HOM05D003542 ORTHO05D004799 2.7e-24 118.2 338 27.5
C04p13130 Brassica napus HOM05D003542 ORTHO05D004799 1.2e-22 112.8 332 26.5
Cre01.g000550 Chlamydomonas reinhardtii HOM05D003542 ORTHO05D004799 1.5e-22 112.5 250 30.4
PRCOL_00005418 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 2.2e-21 108.6 454 26.2
HanXRQChr17g0537331 Helianthus annuus HOM05D003542 ORTHO05D004799 1.3e-18 99.4 194 32.5
HanXRQChr17g0537351 Helianthus annuus HOM05D003542 ORTHO05D004799 5.0e-18 97.4 247 27.5
MCO13G070 Micromonas commoda HOM05D003542 ORTHO05D004799 3.2e-17 94.7 370 25.4
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 4.2e-17 94.4 245 25.3
MCO04G331 Micromonas commoda HOM05D003542 ORTHO05D004799 6.8e-15 87.0 408 25.5
MCO03G075 Micromonas commoda HOM05D003542 ORTHO05D049253 1.5e-14 85.9 436 24.5
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 8.3e-13 80.1 282 25.9
PRCOL_00002802 Prasinoderma coloniale HOM05D003542 ORTHO05D004799 8.3e-13 80.1 410 22.7
MCO14G411 Micromonas commoda HOM05D003542 ORTHO05D049034 1.4e-12 79.3 552 23.7
Oeu033614.1 Olea europaea HOM05D003542 ORTHO05D004799 1.4e-12 79.3 309 22.0
Cpa.g.sc90.39 Carica papaya HOM05D003542 ORTHO05D004799 3.0e-07 61.6 133 27.8
Cpa.g.sc2620.1 Carica papaya HOM05D003542 ORTHO05D018761 4.0e-07 61.2 100 34.0
CANSAT78G0317 Cannabis sativa HOM05D000763 ORTHO05D000599 5.2e-07 60.8 113 29.2
GSVIVG01010291001 Vitis vinifera HOM05D000763 ORTHO05D000599 5.2e-07 60.8 120 30.8
Atru.chr4.1400 Acer truncatum HOM05D003228 ORTHO05D003698 1.5e-06 59.3 122 29.5
Atru.chr4.1409 Acer truncatum HOM05D003228 ORTHO05D003698 2.0e-06 58.9 118 29.7
ATR1127G059 Amborella trichopoda HOM05D003228 ORTHO05D003698 2.0e-06 58.9 103 32.0
PRCOL_00000763 Prasinoderma coloniale HOM05D003542 ORTHO05D049034 2.6e-06 58.5 115 31.3
Zm00001eb143220 Zea mays HOM05D000763 ORTHO05D000599 2.6e-06 58.5 133 31.6
Zm00001eb364420 Zea mays HOM05D000763 ORTHO05D000599 2.6e-06 58.5 116 33.6
CSS0037399 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 3.4e-06 58.2 67 35.8
ClCG06G007920 Citrullus lanatus HOM05D000763 ORTHO05D000599 9.8e-06 56.6 114 30.7
MELO3C020434.2 Cucumis melo HOM05D000763 ORTHO05D000599 9.8e-06 56.6 114 30.7
CsaV3_2G011660 Cucumis sativus L. HOM05D000763 ORTHO05D000599 9.8e-06 56.6 114 30.7


User provided reference genes

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