Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 2.3e-138 496.1 372 100.0
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 1.9e-15 87.8 91 49.5
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 1.2e-14 85.1 91 45.1
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 1.2e-14 85.1 97 44.3
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 3.6e-14 83.6 100 42.0
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 1.0e-13 82.0 109 40.4
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 1.0e-13 82.0 87 44.8
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 1.4e-13 81.6 90 42.2
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.4e-13 81.6 91 42.9
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 1.4e-13 81.6 91 44.0
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 1.4e-13 81.6 91 44.0
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 1.4e-13 81.6 105 40.0
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.8e-13 81.3 91 44.0
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 1.8e-13 81.3 90 43.3
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 1.8e-13 81.3 105 41.0
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 2.3e-13 80.9 100 40.0
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 2.3e-13 80.9 95 42.1
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 3.0e-13 80.5 87 41.4
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 3.0e-13 80.5 98 40.8
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 4.0e-13 80.1 87 42.5
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 4.0e-13 80.1 90 43.3
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 4.0e-13 80.1 90 43.3
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 4.0e-13 80.1 90 43.3
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 5.2e-13 79.7 90 43.3
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 5.2e-13 79.7 87 42.5
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 5.2e-13 79.7 100 41.0
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 6.7e-13 79.3 99 42.4
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 6.7e-13 79.3 92 43.5
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 6.7e-13 79.3 92 43.5
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 8.8e-13 79.0 100 38.0
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 8.8e-13 79.0 100 37.0
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 8.8e-13 79.0 92 42.4
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 8.8e-13 79.0 88 42.0
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 8.8e-13 79.0 87 44.8
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 1.2e-12 78.6 95 42.1
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 2.0e-12 77.8 87 41.4
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 2.0e-12 77.8 92 41.3
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 2.0e-12 77.8 93 40.9
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 2.6e-12 77.4 286 24.1
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 5.7e-12 76.3 86 44.2
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 5.7e-12 76.3 87 42.5
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 7.5e-12 75.9 93 45.2
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 9.7e-12 75.5 97 39.2
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 9.7e-12 75.5 98 38.8
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 9.7e-12 75.5 87 46.0
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 1.3e-11 75.1 89 42.7
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 2.2e-11 74.3 87 44.8
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 2.2e-11 74.3 92 41.3
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 2.8e-11 73.9 95 41.1
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 3.7e-11 73.6 91 40.7
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 3.7e-11 73.6 91 37.4
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 3.7e-11 73.6 96 40.6
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 4.8e-11 73.2 92 40.2
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 4.8e-11 73.2 92 42.4
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 4.8e-11 73.2 92 40.2
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 6.3e-11 72.8 95 38.9
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 6.3e-11 72.8 90 42.2
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 6.3e-11 72.8 86 43.0
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 8.2e-11 72.4 106 35.8
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 8.2e-11 72.4 106 35.8
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 8.2e-11 72.4 91 37.4
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 8.2e-11 72.4 90 41.1
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 1.1e-10 72.0 87 40.2
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 1.1e-10 72.0 90 40.0
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.1e-10 72.0 288 22.9
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 1.1e-10 72.0 90 40.0
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 1.1e-10 72.0 90 40.0
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 1.1e-10 72.0 87 41.4
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 1.4e-10 71.6 90 40.0
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 1.8e-10 71.2 115 36.5
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 1.8e-10 71.2 92 40.2
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 1.8e-10 71.2 90 40.0
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 1.8e-10 71.2 90 41.1
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.8e-10 71.2 92 39.1
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 1.8e-10 71.2 98 37.8
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 2.4e-10 70.9 103 37.9
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 2.4e-10 70.9 98 38.8
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 2.4e-10 70.9 94 40.4
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 2.4e-10 70.9 93 38.7
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 3.1e-10 70.5 93 38.7
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 3.1e-10 70.5 90 41.1
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 4.1e-10 70.1 93 38.7
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 5.3e-10 69.7 91 36.3
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 7.0e-10 69.3 89 40.4
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 7.0e-10 69.3 87 40.2
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 7.0e-10 69.3 92 40.2
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 7.0e-10 69.3 90 38.9
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 9.1e-10 68.9 90 40.0
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 9.1e-10 68.9 90 40.0
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 9.1e-10 68.9 90 40.0
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 1.2e-09 68.6 86 41.9
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 1.2e-09 68.6 88 40.9
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 1.2e-09 68.6 87 40.2
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.6e-09 68.2 92 39.1
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 3.5e-09 67.0 87 40.2
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 3.5e-09 67.0 86 38.4
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 1.3e-08 65.1 103 36.9
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 1.7e-08 64.7 103 36.9
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 2.9e-08 63.9 96 37.5
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 5.0e-08 63.2 67 44.8
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 6.5e-08 62.8 75 41.3
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 2.1e-06 57.8 98 36.7


User provided reference genes

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