Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 0.0e+00 1541.2 910 100.0
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.0e-78 299.3 740 32.4
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 2.8e-76 291.2 744 30.8
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 7.0e-72 276.6 954 28.2
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.5e-69 268.9 670 31.3
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.9e-69 268.5 670 31.3
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 5.6e-69 266.9 740 29.5
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.8e-68 264.6 670 31.2
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 4.7e-68 263.8 744 30.6
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 6.2e-68 263.5 738 30.2
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.1e-67 261.2 749 29.9
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 1.2e-66 259.2 740 29.9
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 3.4e-66 257.7 834 29.5
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 5.8e-66 256.9 697 30.3
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 7.5e-66 256.5 745 30.2
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 7.5e-66 256.5 750 30.1
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 9.9e-66 256.1 672 31.0
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.3e-65 255.8 726 28.7
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 2.2e-65 255.0 746 29.8
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 4.9e-65 253.8 750 29.3
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 6.4e-65 253.4 747 29.5
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.1e-64 252.7 739 29.6
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.4e-64 252.3 747 29.0
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.4e-64 252.3 746 29.8
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 1.4e-64 252.3 717 29.0
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 1.9e-64 251.9 742 29.8
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 1.9e-64 251.9 742 28.7
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 1.9e-64 251.9 743 29.5
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.9e-64 251.9 750 30.3
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.2e-64 251.1 747 28.9
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 3.2e-64 251.1 743 28.4
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 3.2e-64 251.1 742 28.3
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 3.2e-64 251.1 746 28.7
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 4.1e-64 250.8 742 29.2
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 5.4e-64 250.4 752 28.9
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 1.2e-63 249.2 742 29.6
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.2e-63 249.2 743 29.3
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 1.6e-63 248.8 742 29.2
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.6e-63 248.8 742 29.6
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 2.1e-63 248.4 742 28.2
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.7e-63 248.1 745 28.6
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 3.5e-63 247.7 738 28.7
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 4.6e-63 247.3 753 29.2
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 4.6e-63 247.3 673 29.7
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 4.6e-63 247.3 750 29.7
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 4.6e-63 247.3 730 28.6
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 6.0e-63 246.9 988 27.9
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 7.8e-63 246.5 723 28.8
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 7.8e-63 246.5 745 28.9
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 1.0e-62 246.1 714 28.3
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.0e-62 246.1 750 29.1
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.3e-62 245.7 747 28.8
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 1.7e-62 245.4 729 28.1
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 1.7e-62 245.4 747 28.8
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 3.9e-62 244.2 745 29.3
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 3.9e-62 244.2 749 28.4
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 3.9e-62 244.2 745 29.1
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 3.9e-62 244.2 743 28.9
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 5.1e-62 243.8 746 28.8
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 5.1e-62 243.8 746 29.6
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 5.1e-62 243.8 723 29.0
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 6.6e-62 243.4 733 28.9
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 8.6e-62 243.0 720 29.9
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 8.6e-62 243.0 744 28.5
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.5e-61 242.3 749 29.1
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 1.9e-61 241.9 748 28.6
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 3.3e-61 241.1 750 29.6
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 4.3e-61 240.7 745 29.3
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 4.3e-61 240.7 720 29.6
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 5.6e-61 240.4 717 29.0
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 9.5e-61 239.6 719 27.8
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 9.5e-61 239.6 744 28.5
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 9.5e-61 239.6 744 27.8
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 1.2e-60 239.2 749 29.0
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 1.6e-60 238.8 746 28.7
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 2.1e-60 238.4 741 29.6
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 2.8e-60 238.0 747 28.8
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.8e-60 238.0 673 30.3
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 3.6e-60 237.7 748 28.6
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 3.6e-60 237.7 745 28.3
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 8.1e-60 236.5 745 28.7
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 8.1e-60 236.5 717 28.7
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 1.4e-59 235.7 739 28.3
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.4e-59 235.7 738 29.0
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.8e-59 235.3 743 27.6
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.4e-59 235.0 720 29.3
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 4.0e-59 234.2 746 27.7
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 8.9e-59 233.0 701 28.5
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 8.9e-59 233.0 955 26.3
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 1.5e-58 232.3 747 28.6
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 7.6e-58 229.9 759 28.7
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 1.3e-57 229.2 747 28.2
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 1.3e-57 229.2 750 29.3
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 1.7e-57 228.8 953 26.5
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 6.4e-57 226.9 757 27.5
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.4e-56 225.7 755 28.6
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 3.5e-55 221.1 956 25.7
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 4.6e-55 220.7 766 27.0
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 1.3e-54 219.2 605 30.1
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 6.9e-51 206.8 629 27.5
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 5.8e-50 203.8 739 27.7
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 5.4e-48 197.2 741 26.6
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 7.1e-48 196.8 739 26.3
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.7e-46 192.2 718 25.1
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.7e-46 192.2 673 26.6
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 6.6e-46 190.3 696 25.4
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 3.3e-45 188.0 700 25.7
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 6.2e-44 183.7 429 29.6
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 4.0e-43 181.0 696 26.1
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 9.9e-42 176.4 712 25.4
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 1.8e-38 165.6 442 29.4
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 2.4e-35 155.2 719 23.6
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.5e-34 152.5 652 23.9
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 2.6e-34 151.8 770 24.0
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 7.6e-34 150.2 745 23.1
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 8.4e-33 146.7 709 23.6
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.4e-32 146.0 334 33.2
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 6.7e-30 137.1 546 24.4
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 4.5e-26 124.4 343 27.1
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 2.5e-21 108.6 428 24.3
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 4.3e-21 107.8 725 21.7
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.1e-16 93.2 93 47.3
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.0e-14 86.7 170 34.1
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 5.3e-11 74.3 212 33.0
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 7.2e-08 63.9 226 28.3
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 2.7e-07 62.0 256 27.7
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 1.0e-06 60.1 120 30.8
Dinv04870 Davidia involucrata HOM05D002332 ORTHO05D002509 2.3e-06 58.9 200 22.5
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 3.0e-06 58.5 225 23.6
Manes.14G052901 Manihot esculenta HOM05D002332 ORTHO05D002509 3.9e-06 58.2 224 23.7
QL10p004201 Quercus lobata HOM05D002332 ORTHO05D002509 6.7e-06 57.4 205 24.9
Duzib084G0667 Durio zibethinus HOM05D002332 ORTHO05D002509 8.8e-06 57.0 216 22.2
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 8.8e-06 57.0 245 27.3


User provided reference genes

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