Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 4.0e-94 348.2 190 100.0
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 5.3e-30 135.2 117 52.1
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 2.6e-29 132.9 141 47.5
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 4.5e-29 132.1 152 42.8
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 7.6e-29 131.3 151 43.0
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.7e-28 130.2 115 52.2
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.2e-28 129.8 144 45.1
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 2.9e-28 129.4 143 43.4
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.9e-28 129.4 127 49.6
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 2.9e-28 129.4 131 47.3
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 3.8e-28 129.0 147 42.9
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 3.8e-28 129.0 124 48.4
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 6.5e-28 128.3 156 41.7
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 8.4e-28 127.9 142 46.5
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 8.4e-28 127.9 120 49.2
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.1e-27 127.5 181 39.8
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 1.1e-27 127.5 142 44.4
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.1e-27 127.5 118 52.5
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.4e-27 127.1 180 41.1
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 1.4e-27 127.1 152 40.1
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.4e-27 127.1 153 44.4
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.9e-27 126.7 118 48.3
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 1.9e-27 126.7 138 45.7
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 3.2e-27 125.9 170 42.4
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 3.2e-27 125.9 142 45.1
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 3.2e-27 125.9 136 44.9
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 3.2e-27 125.9 145 42.8
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 4.2e-27 125.6 168 41.7
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 4.2e-27 125.6 124 46.8
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 5.5e-27 125.2 125 46.4
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 7.2e-27 124.8 124 47.6
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 7.2e-27 124.8 127 46.5
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 7.2e-27 124.8 143 43.4
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 7.2e-27 124.8 139 42.4
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 7.2e-27 124.8 151 44.4
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 9.3e-27 124.4 124 46.0
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 9.3e-27 124.4 146 41.8
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 9.3e-27 124.4 135 43.7
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 1.2e-26 124.0 128 44.5
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.2e-26 124.0 190 38.4
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 1.2e-26 124.0 190 38.4
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 1.6e-26 123.6 151 41.7
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 1.6e-26 123.6 181 40.3
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.1e-26 123.2 127 46.5
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 2.1e-26 123.2 106 55.7
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 3.5e-26 122.5 124 44.4
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 3.5e-26 122.5 124 45.2
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 3.5e-26 122.5 140 44.3
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 3.5e-26 122.5 132 44.7
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 3.5e-26 122.5 144 43.1
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 4.6e-26 122.1 118 44.9
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 4.6e-26 122.1 139 41.0
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 4.6e-26 122.1 162 40.7
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 4.6e-26 122.1 127 44.1
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 4.6e-26 122.1 148 39.9
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 4.6e-26 122.1 181 39.8
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 6.1e-26 121.7 124 44.4
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 6.1e-26 121.7 118 46.6
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 6.1e-26 121.7 146 40.4
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 6.1e-26 121.7 142 42.3
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 6.1e-26 121.7 151 40.4
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 7.9e-26 121.3 141 41.1
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 7.9e-26 121.3 167 40.7
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 1.0e-25 120.9 172 37.2
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 1.0e-25 120.9 128 44.5
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 1.3e-25 120.6 146 43.8
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.3e-25 120.6 181 39.2
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 1.8e-25 120.2 120 45.0
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 1.8e-25 120.2 139 41.0
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 2.3e-25 119.8 154 40.9
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.0e-25 119.4 154 40.9
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 3.0e-25 119.4 162 40.1
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.0e-25 119.4 162 40.1
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 3.9e-25 119.0 118 44.9
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 3.9e-25 119.0 140 42.1
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 5.1e-25 118.6 138 44.2
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 6.7e-25 118.2 117 45.3
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 6.7e-25 118.2 146 39.0
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 8.7e-25 117.9 127 44.1
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.5e-24 117.1 160 40.6
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 2.5e-24 116.3 129 44.2
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 2.5e-24 116.3 113 48.7
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 2.5e-24 116.3 118 44.9
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 3.3e-24 115.9 118 45.8
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 3.3e-24 115.9 118 44.1
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 4.3e-24 115.5 118 44.1
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 4.3e-24 115.5 161 39.8
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 5.7e-24 115.2 118 44.1
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 7.4e-24 114.8 118 44.1
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 7.4e-24 114.8 118 44.1
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 7.4e-24 114.8 167 40.1
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 1.6e-23 113.6 118 44.1
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.6e-23 113.6 117 47.9
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 2.2e-23 113.2 118 43.2
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 8.2e-23 111.3 131 40.5
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.8e-22 110.2 145 37.2
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 4.1e-22 109.0 130 40.8
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 9.0e-22 107.8 113 45.1
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 9.0e-22 107.8 109 45.0
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 4.5e-21 105.5 134 39.6
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 4.5e-21 105.5 106 50.9
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 7.7e-21 104.8 141 40.4
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 7.7e-21 104.8 116 43.1
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 1.0e-20 104.4 111 45.0
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 3.8e-20 102.4 102 44.1
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 3.2e-19 99.4 102 41.2
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 4.2e-19 99.0 143 39.2
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 5.5e-19 98.6 144 38.9
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 9.4e-19 97.8 129 40.3
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 9.4e-19 97.8 129 40.3
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.2e-18 97.4 102 42.2
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 1.6e-18 97.1 117 40.2
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 7.9e-18 94.7 96 44.8
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.0e-17 94.4 78 51.3
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 5.1e-17 92.0 169 33.7
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 7.4e-16 88.2 87 50.6
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 1.3e-15 87.4 86 44.2
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 1.5e-13 80.5 79 49.4
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 1.5e-13 80.5 109 40.4
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 1.0e-12 77.8 94 40.4
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 3.8e-12 75.9 93 40.9
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 5.0e-12 75.5 72 47.2
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 1.4e-11 73.9 72 45.8
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 2.5e-11 73.2 118 33.9
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 3.2e-11 72.8 72 45.8
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.2e-11 72.8 78 39.7
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 1.6e-10 70.5 77 41.6
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 2.7e-10 69.7 110 33.6
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.7e-10 69.7 110 33.6
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 6.1e-10 68.6 68 44.1
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 6.1e-10 68.6 93 38.7
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 2.0e-08 63.5 82 39.0
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 2.6e-08 63.2 116 30.2


User provided reference genes

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