Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g212417 Chlamydomonas reinhardtii HOM05D001799 ORTHO05D001655 2.8e-256 888.6 642 100.0
Cre03.g210625 Chlamydomonas reinhardtii HOM05D000515 ORTHO05D021272 3.7e-27 127.5 200 41.0
Cre10.g464133 Chlamydomonas reinhardtii HOM05D030854 ORTHO05D001655 2.2e-19 101.7 96 52.1
Cre10.g464037 Chlamydomonas reinhardtii HOM05D030854 ORTHO05D001655 3.5e-17 94.4 90 53.3
Cre03.g212529 Chlamydomonas reinhardtii HOM05D030854 ORTHO05D001655 6.0e-17 93.6 95 52.6
Cre03.g211969 Chlamydomonas reinhardtii HOM05D001799 ORTHO05D001655 7.8e-17 93.2 107 44.9
Cre03.g211857 Chlamydomonas reinhardtii HOM05D001799 ORTHO05D001655 1.7e-16 92.0 87 51.7
Cre03.g211297 Chlamydomonas reinhardtii HOM05D030854 ORTHO05D001655 1.2e-14 85.9 101 48.5
PRCOL_00000511 Prasinoderma coloniale HOM05D000515 ORTHO05D021272 1.5e-12 79.0 107 38.3
Ca_08756_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 8.3e-11 73.2 101 39.6
Duzib211G0692 Durio zibethinus HOM05D001799 ORTHO05D001655 8.3e-11 73.2 92 41.3
Lsat_1_v5_gn_5_180101 Lactuca sativa HOM05D001799 ORTHO05D001655 1.1e-10 72.8 96 40.6
Os03g0140900 Oryza sativa ssp. japonica HOM05D001799 ORTHO05D001655 1.1e-10 72.8 151 33.8
A01p19050 Brassica napus HOM05D001799 ORTHO05D001655 1.4e-10 72.4 86 44.2
BolC1t02348H Brassica oleracea HOM05D001799 ORTHO05D001655 1.4e-10 72.4 86 44.2
BraA01t01848Z Brassica rapa HOM05D001799 ORTHO05D001655 1.4e-10 72.4 86 44.2
BcaC09g50556 Brassica carinata HOM05D001799 ORTHO05D001655 1.9e-10 72.0 86 44.2
C01p23980 Brassica napus HOM05D001799 ORTHO05D001655 1.9e-10 72.0 86 44.2
SGA_v2.0_scaffold29G12192 Striga asiatica HOM05D001799 ORTHO05D001655 2.4e-10 71.6 124 36.3
Gohir.D08G056500 Gossypium hirsutum HOM05D001799 ORTHO05D001655 3.2e-10 71.2 102 40.2
Manes.12G038900 Manihot esculenta HOM05D001799 ORTHO05D001655 4.1e-10 70.9 101 40.6
ECA248G2600 Erigeron canadensis HOM05D001799 ORTHO05D001655 5.4e-10 70.5 97 39.2
Hma1.2p1_1224F.1_g268440 Hydrangea macrophylla HOM05D001799 ORTHO05D001655 5.4e-10 70.5 86 44.2
Medtr7g098950 Medicago truncatula HOM05D001799 ORTHO05D001655 5.4e-10 70.5 120 35.8
Eucgr.K01406 Eucalyptus grandis HOM05D001799 ORTHO05D001655 7.1e-10 70.1 107 42.1
Gorai.004G057600 Gossypium raimondii HOM05D001799 ORTHO05D001655 7.1e-10 70.1 103 39.8
Pp3c20_15130 Physcomitrium patens HOM05D001799 ORTHO05D001655 7.1e-10 70.1 88 37.5
Manes.13G038700 Manihot esculenta HOM05D001799 ORTHO05D001655 9.2e-10 69.7 133 36.1
BcaNung01377 Brassica carinata HOM05D001799 ORTHO05D001655 1.2e-09 69.3 92 39.1
BcaNung01378 Brassica carinata HOM05D001799 ORTHO05D001655 1.2e-09 69.3 92 39.1
BcaNung01644 Brassica carinata HOM05D001799 ORTHO05D001655 1.2e-09 69.3 99 40.4
A03p57450 Brassica napus HOM05D001799 ORTHO05D001655 1.2e-09 69.3 95 40.0
BolC1t01046H Brassica oleracea HOM05D001799 ORTHO05D001655 1.2e-09 69.3 92 39.1
BolC1t01047H Brassica oleracea HOM05D001799 ORTHO05D001655 1.2e-09 69.3 92 39.1
BraA03t14813Z Brassica rapa HOM05D001799 ORTHO05D001655 1.2e-09 69.3 95 40.0
Dinv43054 Davidia involucrata HOM05D001799 ORTHO05D001655 1.2e-09 69.3 97 41.2
Duzib133G0885 Durio zibethinus HOM05D001799 ORTHO05D001655 1.2e-09 69.3 87 40.2
Glyma.03G168500 Glycine max HOM05D001799 ORTHO05D001655 1.2e-09 69.3 178 28.1
Lsat_1_v5_gn_8_91040 Lactuca sativa HOM05D001799 ORTHO05D001655 1.2e-09 69.3 143 35.0
BcaNung04699 Brassica carinata HOM05D001799 ORTHO05D001655 1.6e-09 68.9 92 39.1
Eucgr.K01404 Eucalyptus grandis HOM05D001799 ORTHO05D001655 1.6e-09 68.9 109 40.4
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 1.6e-09 68.9 104 40.4
Atru.chr1.2423 Acer truncatum HOM05D001799 ORTHO05D001655 2.1e-09 68.6 90 40.0
Atru.chr5.1957 Acer truncatum HOM05D001799 ORTHO05D001655 2.1e-09 68.6 102 40.2
BcaNung06060 Brassica carinata HOM05D001799 ORTHO05D001655 2.1e-09 68.6 92 39.1
Thhalv10026379m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 2.7e-09 68.2 92 41.3
Potri.002G255400 Populus trichocarpa HOM05D001799 ORTHO05D001655 2.7e-09 68.2 104 40.4
THA.LOC104814538 Tarenaya hassleriana HOM05D001799 ORTHO05D001655 2.7e-09 68.2 93 40.9
Aqoxy1G01803 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 3.5e-09 67.8 94 39.4
arahy.Tifrunner.gnm1.ann1.TYPP4C Arachis hypogaea HOM05D001799 ORTHO05D001655 3.5e-09 67.8 99 37.4
Gohir.A08G046000 Gossypium hirsutum HOM05D001799 ORTHO05D001655 3.5e-09 67.8 99 39.4
C07p55660 Brassica napus HOM05D001799 ORTHO05D001655 4.6e-09 67.4 95 38.9
BolC7t46046H Brassica oleracea HOM05D001799 ORTHO05D001655 4.6e-09 67.4 95 38.9
Aa31LG8G17290 Aethionema arabicum HOM05D001799 ORTHO05D001655 6.0e-09 67.0 98 37.8
Glyma.19G169900 Glycine max HOM05D001799 ORTHO05D001655 6.0e-09 67.0 107 38.3
Gohir.D11G140300 Gossypium hirsutum HOM05D001799 ORTHO05D001655 6.0e-09 67.0 106 37.7
Gorai.007G150500 Gossypium raimondii HOM05D001799 ORTHO05D001655 6.0e-09 67.0 106 37.7
Medtr7g099000 Medicago truncatula HOM05D001799 ORTHO05D001655 6.0e-09 67.0 95 38.9
arahy.Tifrunner.gnm1.ann1.FR0W00 Arachis hypogaea HOM05D001799 ORTHO05D001655 7.8e-09 66.6 99 37.4
AT4G27660 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 1.0e-08 66.2 91 40.7
AT4G28690 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 1.0e-08 66.2 90 42.2
COL.COLO4_20962 Corchorus olitorius HOM05D001799 ORTHO05D001655 1.0e-08 66.2 98 38.8
HanXRQChr01g0014871 Helianthus annuus HOM05D001799 ORTHO05D001655 1.0e-08 66.2 92 35.9
Nn1g03020 Nelumbo nucifera HOM05D001799 ORTHO05D001655 1.0e-08 66.2 93 39.8
Pp3c8_13850 Physcomitrium patens HOM05D001799 ORTHO05D001655 1.0e-08 66.2 118 32.2
SEGI_05533 Sequoiadendron giganteum HOM05D001799 ORTHO05D001655 1.0e-08 66.2 90 37.8
Thecc.01G247900 Theobroma cacao HOM05D001799 ORTHO05D001655 1.0e-08 66.2 116 33.6
EL10Ac3g05162 Beta vulgaris HOM05D001799 ORTHO05D001655 1.3e-08 65.9 85 42.4
BcaNung04796 Brassica carinata HOM05D001799 ORTHO05D001655 1.7e-08 65.5 87 40.2
C09p15170 Brassica napus HOM05D001799 ORTHO05D001655 1.7e-08 65.5 87 40.2
GSVIVG01028449001 Vitis vinifera HOM05D001799 ORTHO05D001655 1.7e-08 65.5 100 38.0
A09p12810 Brassica napus HOM05D001799 ORTHO05D001655 2.3e-08 65.1 90 40.0
Gohir.A11G134200 Gossypium hirsutum HOM05D001799 ORTHO05D001655 2.3e-08 65.1 128 33.6
Sp7g26660 Schrenkiella parvula HOM05D001799 ORTHO05D001655 2.3e-08 65.1 93 36.6
SGA_v2.0_scaffold18G08472 Striga asiatica HOM05D001799 ORTHO05D001655 2.3e-08 65.1 93 39.8
BraA09t36924Z Brassica rapa HOM05D001799 ORTHO05D001655 3.0e-08 64.7 90 40.0
Lj5g0010621 Lotus japonicus HOM05D001799 ORTHO05D001655 3.0e-08 64.7 119 34.5
Os10g0573300 Oryza sativa ssp. japonica HOM05D001799 ORTHO05D001655 3.0e-08 64.7 94 41.5
QL09p042405 Quercus lobata HOM05D001799 ORTHO05D001655 3.0e-08 64.7 103 35.9
Nn3g19824 Nelumbo nucifera HOM05D001799 ORTHO05D001655 3.9e-08 64.3 99 40.4
Psat3g052240 Pisum sativum HOM05D001799 ORTHO05D001655 3.9e-08 64.3 107 38.3
PGR044G0994 Punica granatum HOM05D001799 ORTHO05D001655 3.9e-08 64.3 95 37.9
RcHm_v2.0_Chr6g0286061 Rosa chinensis HOM05D001799 ORTHO05D001655 3.9e-08 64.3 102 34.3
Atru.chr12.2490 Acer truncatum HOM05D001799 ORTHO05D001655 5.1e-08 63.9 105 37.1
Aqoxy1G02019 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 5.1e-08 63.9 90 38.9
BcaC06g36714 Brassica carinata HOM05D001799 ORTHO05D001655 5.1e-08 63.9 96 36.5
BolC7t40521H Brassica oleracea HOM05D001799 ORTHO05D001655 5.1e-08 63.9 96 36.5
Ciclev10019675m.g Citrus clementina HOM05D001799 ORTHO05D001655 5.1e-08 63.9 93 38.7
Thhalv10001979m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 5.1e-08 63.9 87 39.1
MD05G1186600 Malus domestica HOM05D001799 ORTHO05D001655 5.1e-08 63.9 153 32.7
Atru.chr12.2449 Acer truncatum HOM05D001799 ORTHO05D001655 6.6e-08 63.5 108 35.2
Hma1.2p1_2051F.1_g312570 Hydrangea macrophylla HOM05D001799 ORTHO05D001655 6.6e-08 63.5 98 40.8
Medtr1g069440 Medicago truncatula HOM05D001799 ORTHO05D001655 6.6e-08 63.5 120 35.0
TAR633G1919 Trochodendron aralioides HOM05D001799 ORTHO05D001655 6.6e-08 63.5 103 37.9
AL7G23840 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 8.6e-08 63.2 88 39.8
Prupe.8G213400 Prunus persica HOM05D001799 ORTHO05D001655 8.6e-08 63.2 99 35.4
Atru.chr12.2450 Acer truncatum HOM05D001799 ORTHO05D001655 1.1e-07 62.8 91 37.4
Carub.0003s3465 Capsella rubella HOM05D001799 ORTHO05D001655 1.1e-07 62.8 87 37.9
FvH4_2g20270 Fragaria vesca HOM05D001799 ORTHO05D001655 1.1e-07 62.8 106 35.8
PSO764G0262 Papaver somniferum HOM05D001799 ORTHO05D001655 1.1e-07 62.8 113 34.5
PSO832G2966 Papaver somniferum HOM05D001799 ORTHO05D001655 1.1e-07 62.8 113 34.5
Hund05495 Selenicereus undatus HOM05D001799 ORTHO05D001655 1.1e-07 62.8 81 43.2
PGSC0003DMG400007720 Solanum tuberosum HOM05D001799 ORTHO05D001655 1.1e-07 62.8 94 37.2
TAR349G0003 Trochodendron aralioides HOM05D001799 ORTHO05D001655 1.1e-07 62.8 96 35.4
Atru.chr12.2492 Acer truncatum HOM05D001799 ORTHO05D001655 1.5e-07 62.4 118 33.1
CAN.G303.35 Capsicum annuum HOM05D001799 ORTHO05D001655 1.5e-07 62.4 92 38.0
Thhalv10027052m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 1.5e-07 62.4 94 36.2
Nitab4.5_0000385g0050 Nicotiana tabacum HOM05D001799 ORTHO05D001655 1.5e-07 62.4 93 37.6
Nitab4.5_0006821g0050 Nicotiana tabacum HOM05D001799 ORTHO05D001655 1.5e-07 62.4 85 40.0
Aqoxy5G00108 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 1.9e-07 62.0 94 35.1
AL7G25010 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 1.9e-07 62.0 96 36.5
BcaB07g31599 Brassica carinata HOM05D001799 ORTHO05D001655 1.9e-07 62.0 88 38.6
CSS0002635 Camellia sinensis var. sinensis HOM05D001799 ORTHO05D001655 1.9e-07 62.0 98 35.7
ECA236G3571 Erigeron canadensis HOM05D001799 ORTHO05D001655 1.9e-07 62.0 145 29.7
CDE08G1688 Ceratophyllum demersum HOM05D001799 ORTHO05D001655 2.5e-07 61.6 115 35.7
Oeu052094.1 Olea europaea HOM05D001799 ORTHO05D001655 2.5e-07 61.6 90 36.7
SalBow4G1659 Salvia bowleyana HOM05D001799 ORTHO05D001655 2.5e-07 61.6 155 30.3
unitig_22.g6311 Utricularia gibba HOM05D001799 ORTHO05D001655 2.5e-07 61.6 75 42.7
Aqoxy1G01801 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 3.3e-07 61.2 100 35.0
Aqoxy1G01804 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 3.3e-07 61.2 114 32.5
AT2G20310 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 3.3e-07 61.2 95 35.8
A07p00400 Brassica napus HOM05D001799 ORTHO05D001655 3.3e-07 61.2 91 37.4
BolC9t54423H Brassica oleracea HOM05D001799 ORTHO05D001655 3.3e-07 61.2 126 34.9
BraA07t27832Z Brassica rapa HOM05D001799 ORTHO05D001655 3.3e-07 61.2 91 37.4
Glyma.13G127600 Glycine max HOM05D001799 ORTHO05D001655 3.3e-07 61.2 112 30.4
Sopen09g025540 Solanum pennellii HOM05D001799 ORTHO05D001655 3.3e-07 61.2 94 36.2
AL3G53260 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 4.3e-07 60.8 91 37.4
AUR62028089 Chenopodium quinoa HOM05D001799 ORTHO05D001655 4.3e-07 60.8 71 42.3
Migut.D00488 Erythranthe guttata HOM05D001799 ORTHO05D001655 4.3e-07 60.8 100 35.0
MBI10_g26045_MAGBIO Magnolia biondii HOM05D001799 ORTHO05D001655 4.3e-07 60.8 93 36.6
Ah.08g213690 Amaranthus hybridus HOM05D001799 ORTHO05D001655 5.6e-07 60.5 95 36.8
Ah.13g070830 Amaranthus hybridus HOM05D001799 ORTHO05D001655 5.6e-07 60.5 89 39.3
Oeu026802.3 Olea europaea HOM05D001799 ORTHO05D001655 5.6e-07 60.5 106 34.9
Oeu039650.1 Olea europaea HOM05D001799 ORTHO05D001655 5.6e-07 60.5 97 36.1
Phvul.007G153900 Phaseolus vulgaris HOM05D001799 ORTHO05D001655 5.6e-07 60.5 120 35.0
Solyc09g064420.4 Solanum lycopersicum HOM05D001799 ORTHO05D001655 5.6e-07 60.5 94 36.2
Aqoxy3G02319 Aquilegia oxysepala HOM05D001799 ORTHO05D001655 7.3e-07 60.1 175 30.9
Ca_09641_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 7.3e-07 60.1 123 33.3
vmacro02715 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 7.3e-07 60.1 91 37.4
Actinidia23705 Actinidia chinensis HOM05D001799 ORTHO05D001655 9.5e-07 59.7 158 30.4
CDE06G2775 Ceratophyllum demersum HOM05D001799 ORTHO05D001655 9.5e-07 59.7 90 36.7
Rhsim13G0040600 Rhododendron simsii HOM05D001799 ORTHO05D001655 9.5e-07 59.7 94 37.2
SGA_v2.0_scaffold44G16852 Striga asiatica HOM05D001799 ORTHO05D001655 9.5e-07 59.7 173 30.6
vmacro14789 Vaccinium macrocarpon HOM05D001799 ORTHO05D001655 9.5e-07 59.7 98 37.8
Psat6g064480 Pisum sativum HOM05D001799 ORTHO05D001655 1.2e-06 59.3 116 32.8
TPR.G35718 Trifolium pratense HOM05D001799 ORTHO05D001655 1.2e-06 59.3 118 33.1
EL10Ac7g17710 Beta vulgaris HOM05D001799 ORTHO05D001655 1.6e-06 58.9 99 36.4
C07p00820 Brassica napus HOM05D001799 ORTHO05D001655 1.6e-06 58.9 91 36.3
Gohir.A12G246150 Gossypium hirsutum HOM05D001799 ORTHO05D001655 2.1e-06 58.5 83 39.8
Cc01_g17690 Coffea canephora HOM05D001799 ORTHO05D001655 2.8e-06 58.2 97 36.1
Pp3c6_21140 Physcomitrium patens HOM05D000515 ORTHO05D021272 2.8e-06 58.2 75 42.7
CAN.G119.8 Capsicum annuum HOM05D001799 ORTHO05D001655 3.6e-06 57.8 66 42.4
Nn1g09661 Nelumbo nucifera HOM05D001799 ORTHO05D001655 3.6e-06 57.8 87 39.1
Nn8g39146 Nelumbo nucifera HOM05D001799 ORTHO05D001655 3.6e-06 57.8 87 39.1
Cfa016150 Carpinus fangiana HOM05D001799 ORTHO05D001655 4.7e-06 57.4 92 34.8
AUR62005981 Chenopodium quinoa HOM05D001799 ORTHO05D001655 4.7e-06 57.4 65 41.5
Haze_00305 Corylus avellana HOM05D000001 ORTHO05D001653 4.7e-06 57.4 92 34.8
Duzib205G0886 Durio zibethinus HOM05D001799 ORTHO05D001655 4.7e-06 57.4 84 39.3
TPR.G33369 Trifolium pratense HOM05D001799 ORTHO05D001655 6.2e-06 57.0 87 35.6
Carub.0008s1445 Capsella rubella HOM05D001799 ORTHO05D001655 8.1e-06 56.6 61 47.5
Hma1.2p1_0094F.1_g047440 Hydrangea macrophylla HOM05D001799 ORTHO05D001655 8.1e-06 56.6 82 37.8
TWI18G0889 Tripterygium wilfordii HOM05D001799 ORTHO05D001655 8.1e-06 56.6 95 36.8


User provided reference genes

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