Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 0.0e+00 1136.7 727 100.0
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 1.7e-39 168.7 325 33.5
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.8e-33 148.7 294 31.6
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 8.8e-33 146.4 306 31.0
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 1.1e-32 146.0 280 32.5
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 1.5e-32 145.6 296 32.1
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 2.0e-32 145.2 280 32.5
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 2.0e-32 145.2 280 32.5
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 3.3e-32 144.4 308 31.5
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 3.3e-32 144.4 296 31.1
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 3.3e-32 144.4 280 32.9
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 5.7e-32 143.7 301 30.9
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 5.7e-32 143.7 295 31.2
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 5.7e-32 143.7 280 31.8
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 5.7e-32 143.7 296 31.1
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 5.7e-32 143.7 285 34.0
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 7.4e-32 143.3 302 30.5
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 7.4e-32 143.3 281 32.4
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 7.4e-32 143.3 293 31.4
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 7.4e-32 143.3 280 32.9
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 9.7e-32 142.9 280 32.5
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 1.3e-31 142.5 298 32.9
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 1.3e-31 142.5 280 31.1
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 1.3e-31 142.5 280 32.5
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 1.7e-31 142.1 308 31.2
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 1.7e-31 142.1 293 30.4
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 2.2e-31 141.7 279 32.3
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 2.8e-31 141.4 280 31.8
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.8e-31 141.4 308 33.4
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 3.7e-31 141.0 296 32.4
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 3.7e-31 141.0 343 28.9
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 3.7e-31 141.0 281 32.7
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 4.8e-31 140.6 296 32.4
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 4.8e-31 140.6 299 31.4
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 4.8e-31 140.6 293 30.7
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 4.8e-31 140.6 293 30.4
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 4.8e-31 140.6 282 33.0
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 4.8e-31 140.6 307 30.9
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 4.8e-31 140.6 307 30.9
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 6.3e-31 140.2 367 28.3
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 6.3e-31 140.2 286 33.2
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 6.3e-31 140.2 297 32.7
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 6.3e-31 140.2 294 32.0
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 6.3e-31 140.2 281 32.4
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 6.3e-31 140.2 299 31.1
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 8.2e-31 139.8 307 30.9
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 8.2e-31 139.8 303 30.7
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 1.1e-30 139.4 293 32.4
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 1.4e-30 139.0 294 31.6
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 1.4e-30 139.0 284 32.4
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.4e-30 139.0 297 32.0
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.4e-30 139.0 280 32.9
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 1.4e-30 139.0 317 30.0
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.8e-30 138.7 281 32.4
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.8e-30 138.7 281 32.4
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 1.8e-30 138.7 280 31.4
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 1.8e-30 138.7 280 30.7
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 1.8e-30 138.7 306 31.4
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 2.4e-30 138.3 293 30.4
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 2.4e-30 138.3 281 32.7
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.4e-30 138.3 281 32.4
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 2.4e-30 138.3 303 31.4
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 2.4e-30 138.3 280 32.5
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 2.4e-30 138.3 296 31.1
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 2.4e-30 138.3 345 28.1
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 2.4e-30 138.3 296 30.4
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.4e-30 138.3 308 32.8
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 3.1e-30 137.9 280 31.4
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 3.1e-30 137.9 282 31.9
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 3.1e-30 137.9 295 31.2
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 4.1e-30 137.5 280 31.4
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 4.1e-30 137.5 281 32.7
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 4.1e-30 137.5 292 30.1
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 4.1e-30 137.5 281 33.5
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 5.3e-30 137.1 299 30.8
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 5.3e-30 137.1 299 30.8
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.3e-30 137.1 299 30.8
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 5.3e-30 137.1 292 30.1
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 7.0e-30 136.7 348 29.3
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 7.0e-30 136.7 294 31.6
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 9.1e-30 136.3 301 29.9
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 9.1e-30 136.3 301 29.9
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 9.1e-30 136.3 277 31.0
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 1.2e-29 136.0 296 30.4
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 1.2e-29 136.0 280 30.7
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 1.2e-29 136.0 280 30.7
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 1.2e-29 136.0 280 30.7
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.6e-29 135.6 299 30.4
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.0e-29 135.2 283 31.8
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 2.0e-29 135.2 321 29.3
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 2.0e-29 135.2 308 30.2
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.6e-29 134.8 296 31.8
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 2.6e-29 134.8 302 30.8
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 2.6e-29 134.8 299 30.4
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.5e-29 134.0 284 31.0
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 5.9e-29 133.7 280 31.1
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.9e-29 133.7 294 30.3
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 5.9e-29 133.7 281 32.4
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 5.9e-29 133.7 284 31.0
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 5.9e-29 133.7 284 31.0
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 5.9e-29 133.7 279 30.8
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 7.7e-29 133.3 320 28.8
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 7.7e-29 133.3 283 31.1
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 7.7e-29 133.3 307 29.6
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.0e-28 132.9 294 30.3
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 1.0e-28 132.9 281 32.4
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 1.0e-28 132.9 281 31.0
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.0e-28 132.9 287 31.4
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 1.3e-28 132.5 320 29.1
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 2.2e-28 131.7 281 30.2
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 2.9e-28 131.3 333 30.0
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 3.8e-28 131.0 331 29.6
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 3.8e-28 131.0 305 31.1
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 5.0e-28 130.6 300 29.7
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 6.5e-28 130.2 281 30.6
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 8.5e-28 129.8 305 29.5
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 1.5e-27 129.0 280 30.7
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 1.9e-27 128.6 280 31.4
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.5e-27 128.3 279 29.4
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 3.2e-27 127.9 280 31.1
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 3.2e-27 127.9 326 29.1
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 3.2e-27 127.9 279 30.1
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 4.2e-27 127.5 304 29.6
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 4.2e-27 127.5 305 29.2
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 5.5e-27 127.1 183 37.7
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 5.5e-27 127.1 280 29.6
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 1.2e-26 125.9 323 30.3
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 1.2e-26 125.9 280 28.9
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 1.6e-26 125.6 188 36.7
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 1.6e-26 125.6 258 29.8
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 2.1e-26 125.2 298 29.2
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 4.7e-26 124.0 192 38.0
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 4.7e-26 124.0 280 30.4
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 1.0e-25 122.9 190 35.3
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 1.0e-25 122.9 288 31.6
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 1.4e-25 122.5 188 36.2
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 2.3e-25 121.7 299 29.1
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 5.2e-25 120.6 286 30.4
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 1.5e-24 119.0 314 27.7
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 2.0e-24 118.6 254 29.9
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 3.3e-24 117.9 292 29.5
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 4.4e-24 117.5 188 36.2
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 7.5e-24 116.7 377 28.1
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 2.8e-23 114.8 315 27.9
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 4.8e-23 114.0 189 36.0
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 4.1e-22 110.9 246 30.1
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 7.0e-22 110.2 355 27.0
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 8.5e-20 103.2 226 31.0
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 1.5e-19 102.4 279 28.0
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 7.2e-19 100.1 280 26.8
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 1.6e-18 99.0 116 43.1
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 1.0e-17 96.3 121 41.3
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 9.8e-16 89.7 200 30.0
MCO14G151 Micromonas commoda HOM05D061371 ORTHO05D049029 1.3e-15 89.4 314 25.2
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 1.3e-15 89.4 148 34.5
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 2.4e-14 85.1 150 38.7
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 4.5e-13 80.9 77 46.8
PRCOL_00000591 Prasinoderma coloniale HOM05D061371 ORTHO05D049029 1.0e-12 79.7 301 25.9
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 4.2e-11 74.3 353 23.2
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.8e-09 68.9 275 23.6
PSO017G0759 Papaver somniferum HOM05D003970 ORTHO05D004615 9.2e-06 56.6 249 22.5


User provided reference genes

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