Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g206900 Chlamydomonas reinhardtii HOM05D003679 ORTHO05D004265 0.0e+00 1751.1 1238 100.0
Sopen11g019340 Solanum pennellii HOM05D003679 ORTHO05D004265 3.3e-32 145.2 812 24.5
Pp3c9_3750 Physcomitrium patens HOM05D003679 ORTHO05D004265 4.4e-32 144.8 874 25.4
Solyc11g042990.2 Solanum lycopersicum HOM05D003679 ORTHO05D004265 5.7e-32 144.4 812 24.5
GSVIVG01037227001 Vitis vinifera HOM05D003679 ORTHO05D004265 5.7e-32 144.4 823 24.7
SMO361G0595 Selaginella moellendorffii HOM05D003679 ORTHO05D004265 3.7e-31 141.7 863 25.0
Peaxi162Scf00078g00824 Petunia axillaris HOM05D003679 ORTHO05D004265 1.1e-30 140.2 812 24.9
Zm00001eb162090 Zea mays HOM05D003679 ORTHO05D004265 1.1e-30 140.2 859 24.7
Nitab4.5_0000213g0040 Nicotiana tabacum HOM05D003679 ORTHO05D004265 1.4e-30 139.8 791 24.3
HanXRQChr10g0298581 Helianthus annuus HOM05D003679 ORTHO05D004265 1.8e-30 139.4 838 24.3
HPP92_006341 Vanilla planifolia HOM05D003679 ORTHO05D004265 1.8e-30 139.4 822 24.2
TWI18G1229 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 2.4e-30 139.0 817 24.4
BcaB07g32282 Brassica carinata HOM05D003679 ORTHO05D004265 4.1e-30 138.3 820 24.8
C05p21960 Brassica napus HOM05D003679 ORTHO05D004265 4.1e-30 138.3 820 24.6
Aa31LG4G9170 Aethionema arabicum HOM05D003679 ORTHO05D004265 5.3e-30 137.9 822 24.5
AL2G31070 Arabidopsis lyrata HOM05D003679 ORTHO05D004265 5.3e-30 137.9 822 24.8
AUR62013388 Chenopodium quinoa HOM05D003679 ORTHO05D004265 5.3e-30 137.9 858 24.0
Sp1g20350 Schrenkiella parvula HOM05D003679 ORTHO05D004265 5.3e-30 137.9 816 24.3
Actinidia29376 Actinidia chinensis HOM05D003679 ORTHO05D004265 6.9e-30 137.5 831 23.9
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 9.1e-30 137.1 820 24.5
BcaC03g15292 Brassica carinata HOM05D003679 ORTHO05D004265 1.2e-29 136.7 826 25.3
Thhalv10018097m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 1.5e-29 136.3 826 24.9
SGA_v2.0_scaffold118G32618 Striga asiatica HOM05D003679 ORTHO05D004265 1.5e-29 136.3 793 24.8
Aa31LG7G6860 Aethionema arabicum HOM05D003679 ORTHO05D004265 2.6e-29 135.6 815 24.3
AT1G71410 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 3.4e-29 135.2 822 24.5
MSTRG.25498 Avicennia marina HOM05D003679 ORTHO05D004265 4.5e-29 134.8 831 25.2
BraA09t39677Z Brassica rapa HOM05D003679 ORTHO05D004265 4.5e-29 134.8 848 24.4
Hund03114 Selenicereus undatus HOM05D003679 ORTHO05D004265 5.9e-29 134.4 816 23.3
Zm00001eb358200 Zea mays HOM05D003679 ORTHO05D004265 5.9e-29 134.4 863 24.6
Aqoxy4G00374 Aquilegia oxysepala HOM05D003679 ORTHO05D004265 7.7e-29 134.0 816 23.8
Sp5g26570 Schrenkiella parvula HOM05D003679 ORTHO05D004265 7.7e-29 134.0 822 24.9
Thecc.08G179800 Theobroma cacao HOM05D003679 ORTHO05D004265 7.7e-29 134.0 871 24.6
CARHR023220 Cardamine hirsuta HOM05D003679 ORTHO05D004265 1.0e-28 133.7 816 24.0
EL10Ac1g01279 Beta vulgaris HOM05D003679 ORTHO05D004265 1.3e-28 133.3 822 24.2
Carub.0001s2237 Capsella rubella HOM05D003679 ORTHO05D004265 1.3e-28 133.3 815 24.4
CAN.G43.11 Capsicum annuum HOM05D003679 ORTHO05D004265 1.3e-28 133.3 839 24.3
Gohir.D05G277500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.3e-28 133.3 862 24.5
A07p37690 Brassica napus HOM05D003679 ORTHO05D004265 2.2e-28 132.5 855 24.8
CARHR291300 Cardamine hirsuta HOM05D003679 ORTHO05D004265 2.2e-28 132.5 822 24.5
AT1G22870 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 2.9e-28 132.1 815 23.9
Gorai.009G290500 Gossypium raimondii HOM05D003679 ORTHO05D004265 2.9e-28 132.1 862 24.4
BolC6t39608H Brassica oleracea HOM05D003679 ORTHO05D004265 3.8e-28 131.7 860 24.9
CDE09G1378 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 5.0e-28 131.3 817 23.3
Sc23g0000050 Simmondsia chinensis HOM05D003679 ORTHO05D004265 6.5e-28 131.0 831 23.9
Dinv37407 Davidia involucrata HOM05D003679 ORTHO05D004265 8.5e-28 130.6 831 24.4
ECA247G4018 Erigeron canadensis HOM05D003679 ORTHO05D004265 8.5e-28 130.6 877 23.9
THA.LOC104809755 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 8.5e-28 130.6 819 24.5
Thhalv10006737m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 1.1e-27 130.2 843 24.2
Gohir.A05G275400 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.1e-27 130.2 873 24.6
PSO063G5029 Papaver somniferum HOM05D003679 ORTHO05D004265 1.1e-27 130.2 818 24.4
C06p45570 Brassica napus HOM05D003679 ORTHO05D004265 1.4e-27 129.8 860 24.9
CSS0010343 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 1.4e-27 129.8 820 24.1
CSS0038034 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 1.4e-27 129.8 820 24.1
Gohir.D05G251500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.4e-27 129.8 854 24.1
Hma1.2p1_0016F.1_g010780 Hydrangea macrophylla HOM05D003679 ORTHO05D004265 1.4e-27 129.8 821 24.0
SalBow7G3862 Salvia bowleyana HOM05D003679 ORTHO05D004265 1.4e-27 129.8 838 24.3
Actinidia03530 Actinidia chinensis HOM05D003679 ORTHO05D004265 1.9e-27 129.4 833 23.9
Carub.0002s1826 Capsella rubella HOM05D003679 ORTHO05D004265 1.9e-27 129.4 858 24.2
MSTRG.1602 Avicennia marina HOM05D003679 ORTHO05D004265 2.5e-27 129.0 808 24.1
THA.LOC104800081 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 2.5e-27 129.0 821 24.5
Gorai.009G262900 Gossypium raimondii HOM05D003679 ORTHO05D004265 3.2e-27 128.6 854 24.1
CDE02G0262 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 4.2e-27 128.3 817 23.4
BcaB05g24669 Brassica carinata HOM05D003679 ORTHO05D004265 5.5e-27 127.9 863 25.0
DCAR_003511 Daucus carota HOM05D003679 ORTHO05D004265 7.2e-27 127.5 862 24.0
Dinv22115 Davidia involucrata HOM05D003679 ORTHO05D004265 7.2e-27 127.5 826 23.8
Lj7C418G9 Lonicera japonica HOM05D003679 ORTHO05D004265 7.2e-27 127.5 815 24.5
ATR0602G033 Amborella trichopoda HOM05D003679 ORTHO05D004265 9.4e-27 127.1 815 23.9
Glyma.09G002400 Glycine max HOM05D003679 ORTHO05D004265 9.4e-27 127.1 870 24.4
MD05G1002800 Malus domestica HOM05D003679 ORTHO05D004265 9.4e-27 127.1 833 24.1
Manes.02G207300 Manihot esculenta HOM05D003679 ORTHO05D004265 9.4e-27 127.1 834 24.3
Cc10_g16340 Coffea canephora HOM05D003679 ORTHO05D004265 1.2e-26 126.7 836 23.7
MD10G1003500 Malus domestica HOM05D003679 ORTHO05D004265 1.6e-26 126.3 833 23.8
Ciclev10018760m.g Citrus clementina HOM05D003679 ORTHO05D004265 7.9e-26 124.0 867 23.3
Migut.C01386 Erythranthe guttata HOM05D003679 ORTHO05D004265 7.9e-26 124.0 885 24.1
Glyma.12G241900 Glycine max HOM05D003679 ORTHO05D004265 1.0e-25 123.6 879 23.8
arahy.Tifrunner.gnm1.ann1.59G37Z Arachis hypogaea HOM05D003679 ORTHO05D004265 1.8e-25 122.9 867 23.9
CiPaw.03G013700 Carya illinoinensis HOM05D003679 ORTHO05D004265 2.3e-25 122.5 820 23.8
arahy.Tifrunner.gnm1.ann1.AU4LT2 Arachis hypogaea HOM05D003679 ORTHO05D004265 3.0e-25 122.1 867 24.0
QL09p001735 Quercus lobata HOM05D003679 ORTHO05D004265 3.0e-25 122.1 830 24.2
Prupe.8G006100 Prunus persica HOM05D003679 ORTHO05D004265 3.9e-25 121.7 862 24.1
BolC2t08949H Brassica oleracea HOM05D003679 ORTHO05D004265 5.2e-25 121.3 592 26.2
PGR004G0725 Punica granatum HOM05D003679 ORTHO05D004265 5.2e-25 121.3 834 23.9
Lalb_Chr19g0131861 Lupinus albus HOM05D003679 ORTHO05D004265 6.7e-25 120.9 817 23.1
CBR_g22378 Chara braunii HOM05D003679 ORTHO05D004265 8.8e-25 120.6 645 23.9
Eucgr.F04075 Eucalyptus grandis HOM05D003679 ORTHO05D004265 8.8e-25 120.6 867 24.2
BcaNung06593 Brassica carinata HOM05D003679 ORTHO05D004265 1.1e-24 120.2 702 25.1
Gohir.A05G249800 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.5e-24 119.8 822 24.0
Ah.05g170420 Amaranthus hybridus HOM05D003679 ORTHO05D004265 3.3e-24 118.6 846 24.1
COL.COLO4_25139 Corchorus olitorius HOM05D003679 ORTHO05D004265 3.3e-24 118.6 862 23.9
Duzib177G0004 Durio zibethinus HOM05D003679 ORTHO05D004265 5.7e-24 117.9 591 25.0
TAR629G3435 Trochodendron aralioides HOM05D003679 ORTHO05D004265 5.7e-24 117.9 861 23.6
Gohir.D08G251000 Gossypium hirsutum HOM05D003679 ORTHO05D004265 9.7e-24 117.1 884 23.5
Lalb_Chr03g0033781 Lupinus albus HOM05D003679 ORTHO05D004265 9.7e-24 117.1 866 23.6
Lj3g0002271 Lotus japonicus HOM05D003679 ORTHO05D004265 1.3e-23 116.7 849 23.9
Gorai.004G267700 Gossypium raimondii HOM05D003679 ORTHO05D004265 1.7e-23 116.3 884 23.5
Mapoly0061s0106 Marchantia polymorpha HOM05D003679 ORTHO05D004265 1.7e-23 116.3 607 24.7
CsaV3_5G039850 Cucumis sativus L. HOM05D003679 ORTHO05D004265 2.2e-23 115.9 815 23.1
A02p17340 Brassica napus HOM05D003679 ORTHO05D004265 2.8e-23 115.5 592 25.8
BraA02t06781Z Brassica rapa HOM05D003679 ORTHO05D004265 2.8e-23 115.5 592 25.8
C02p28990 Brassica napus HOM05D003679 ORTHO05D004265 3.7e-23 115.2 592 25.7
Potri.013G098700 Populus trichocarpa HOM05D003679 ORTHO05D004265 3.7e-23 115.2 825 23.6
Gohir.A08G230600 Gossypium hirsutum HOM05D003679 ORTHO05D004265 4.8e-23 114.8 884 23.5
VMungo1127G1022 Vigna mungo HOM05D003679 ORTHO05D004265 4.8e-23 114.8 862 23.2
Ca_19809_v3 Cicer arietinum L. HOM05D003679 ORTHO05D004265 6.3e-23 114.4 832 23.3
Lsat_1_v5_gn_1_1441 Lactuca sativa HOM05D003679 ORTHO05D004265 1.1e-22 113.6 891 23.8
Lj9C697G2 Lonicera japonica HOM05D003679 ORTHO05D004265 1.1e-22 113.6 914 23.4
A09p41890 Brassica napus HOM05D003679 ORTHO05D004265 1.4e-22 113.2 586 24.9
BraA07t31333Z Brassica rapa HOM05D003679 ORTHO05D004265 1.4e-22 113.2 589 25.5
BcaC05g26193 Brassica carinata HOM05D003679 ORTHO05D004265 1.8e-22 112.8 820 24.1
Rhsim02G0172900 Rhododendron simsii HOM05D003679 ORTHO05D004265 1.8e-22 112.8 906 23.2
Phvul.011G216200 Phaseolus vulgaris HOM05D003679 ORTHO05D004265 2.4e-22 112.5 866 23.8
RcHm_v2.0_Chr6g0251091 Rosa chinensis HOM05D003679 ORTHO05D004265 3.1e-22 112.1 812 23.2
TWI12G0838 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 3.1e-22 112.1 768 23.0
CBR_g8679 Chara braunii HOM05D003679 ORTHO05D004265 4.1e-22 111.7 652 24.5
TPR.G34140 Trifolium pratense HOM05D003679 ORTHO05D004265 4.1e-22 111.7 835 22.8
PSO782G1226 Papaver somniferum HOM05D003679 ORTHO05D004265 5.3e-22 111.3 582 24.9
unitig_37.g13075 Utricularia gibba HOM05D003679 ORTHO05D004265 5.3e-22 111.3 583 25.0
ClCG08G000780 Citrullus lanatus HOM05D003679 ORTHO05D004265 7.0e-22 110.9 849 23.1
Psat7g228040 Pisum sativum HOM05D003679 ORTHO05D004265 1.6e-21 109.8 817 22.5
Nn1g09907 Nelumbo nucifera HOM05D003679 ORTHO05D004265 2.6e-21 109.0 597 24.1
FAN06G3180 Fragaria x ananassa HOM05D003679 ORTHO05D004265 3.5e-21 108.6 586 24.2
Medtr4g030910 Medicago truncatula HOM05D003679 ORTHO05D004265 5.9e-21 107.8 835 22.0
Sed0026343 Sechium edule HOM05D003679 ORTHO05D004265 5.9e-21 107.8 855 22.2
Oeu028929.2 Olea europaea HOM05D003679 ORTHO05D004265 1.0e-20 107.1 836 23.8
MBI07_g03169_MAGBIO Magnolia biondii HOM05D003679 ORTHO05D004265 2.2e-20 105.9 825 22.9
Cpa.g.sc21.95 Carica papaya HOM05D003679 ORTHO05D004265 2.9e-20 105.5 581 23.6
AUR62038539 Chenopodium quinoa HOM05D003679 ORTHO05D004265 2.9e-20 105.5 731 23.9
FAN20G2916 Fragaria x ananassa HOM05D003679 ORTHO05D004265 2.9e-20 105.5 820 22.8
Pp3c15_10870 Physcomitrium patens HOM05D003679 ORTHO05D004265 3.8e-20 105.1 654 26.0
FAN27G2038 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.9e-19 102.8 820 22.6
MCO04G527 Micromonas commoda HOM05D003679 ORTHO05D004265 3.2e-19 102.1 718 24.8
Nitab4.5_0001430g0030 Nicotiana tabacum HOM05D003679 ORTHO05D004265 5.5e-19 101.3 559 24.0
FvH4_2g00710 Fragaria vesca HOM05D003679 ORTHO05D004265 7.2e-19 100.9 856 22.8
Sabra13G0083300 Salix brachista HOM05D003679 ORTHO05D004265 7.2e-19 100.9 832 23.4
Sabra13G0084600 Salix brachista HOM05D003679 ORTHO05D004265 7.2e-19 100.9 832 23.4
MELO3C022164.2 Cucumis melo HOM05D003679 ORTHO05D004265 4.7e-18 98.2 877 22.5
Atru.chr13.2527 Acer truncatum HOM05D003679 ORTHO05D004265 1.0e-17 97.1 570 24.0
SGA_v2.0_scaffold24G10654 Striga asiatica HOM05D003679 ORTHO05D004265 2.3e-17 95.9 567 24.7
Haze_13962 Corylus avellana HOM05D003679 ORTHO05D004265 3.0e-17 95.5 865 22.9
FAN06G3813 Fragaria x ananassa HOM05D003679 ORTHO05D004265 8.8e-17 94.0 586 23.9
FAN24G0047 Fragaria x ananassa HOM05D003679 ORTHO05D004265 2.6e-16 92.4 862 22.4
Oeu028634.1 Olea europaea HOM05D003679 ORTHO05D004265 1.7e-15 89.7 811 22.3
vmacro11031 Vaccinium macrocarpon HOM05D003679 ORTHO05D004265 2.2e-15 89.4 383 26.1
Nn1g04396 Nelumbo nucifera HOM05D003679 ORTHO05D004265 6.3e-15 87.8 814 22.1
PRCOL_00006428 Prasinoderma coloniale HOM05D003679 ORTHO05D004265 8.2e-15 87.4 889 25.2
Cfa023232 Carpinus fangiana HOM05D003679 ORTHO05D004265 3.5e-13 82.0 239 26.4
Cfa008063 Carpinus fangiana HOM05D003679 ORTHO05D004265 7.7e-13 80.9 382 25.1
SEGI_13301 Sequoiadendron giganteum HOM05D003679 ORTHO05D004265 7.7e-13 80.9 376 25.3
Cc02_g28270 Coffea canephora HOM05D003679 ORTHO05D004265 2.9e-12 79.0 590 23.9
Manes.18G113450 Manihot esculenta HOM05D003679 ORTHO05D004265 9.4e-11 73.9 355 24.2
Os01g0616100 Oryza sativa ssp. japonica HOM05D003679 ORTHO05D004265 3.0e-09 68.9 508 24.0
CBR_g30330 Chara braunii HOM05D003679 ORTHO05D004265 5.4e-06 58.2 817 20.6


User provided reference genes

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