Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g203850 Chlamydomonas reinhardtii HOM05D001870 ORTHO05D001797 2.9e-263 911.4 463 100.0
Cre02.g107450 Chlamydomonas reinhardtii HOM05D001870 ORTHO05D001797 5.8e-155 551.6 437 64.1
MCO13G133 Micromonas commoda HOM05D001870 ORTHO05D001797 8.6e-151 537.7 366 69.9
PRCOL_00006192 Prasinoderma coloniale HOM05D001870 ORTHO05D001797 1.4e-145 520.4 417 62.8
SMO351G0644 Selaginella moellendorffii HOM05D001870 ORTHO05D001797 1.1e-28 132.1 399 29.8
DCAR_027249 Daucus carota HOM05D001870 ORTHO05D001797 4.6e-27 126.7 396 29.8
VMungo0720G2513 Vigna mungo HOM05D001870 ORTHO05D001797 2.3e-26 124.4 411 29.9
CSS0037571 Camellia sinensis var. sinensis HOM05D001870 ORTHO05D001797 3.0e-26 124.0 415 30.1
CSS0042606 Camellia sinensis var. sinensis HOM05D001870 ORTHO05D001797 3.0e-26 124.0 415 30.1
FAN12G0249 Fragaria x ananassa HOM05D001870 ORTHO05D001797 3.0e-26 124.0 397 29.7
Mapoly0142s0006 Marchantia polymorpha HOM05D001870 ORTHO05D001797 3.9e-26 123.6 367 30.5
vmacro15382 Vaccinium macrocarpon HOM05D001870 ORTHO05D001797 3.9e-26 123.6 417 29.0
FvH4_4g01660 Fragaria vesca HOM05D001870 ORTHO05D001797 8.6e-26 122.5 397 29.5
Lalb_Chr02g0140761 Lupinus albus HOM05D001870 ORTHO05D001797 1.5e-25 121.7 403 30.0
RhsimUnG0184400 Rhododendron simsii HOM05D001870 ORTHO05D001797 1.5e-25 121.7 424 28.5
Lsat_1_v5_gn_5_146820 Lactuca sativa HOM05D001870 ORTHO05D001797 2.5e-25 120.9 413 28.6
RcHm_v2.0_Chr4g0388281 Rosa chinensis HOM05D001870 ORTHO05D001797 2.5e-25 120.9 410 28.5
SGA_v2.0_scaffold101G29745 Striga asiatica HOM05D001870 ORTHO05D001797 2.5e-25 120.9 412 28.4
FAN17G1751 Fragaria x ananassa HOM05D001870 ORTHO05D001797 3.3e-25 120.6 404 29.0
Sopen03g001280 Solanum pennellii HOM05D001870 ORTHO05D001797 3.3e-25 120.6 416 28.1
CARHR098830 Cardamine hirsuta HOM05D001870 ORTHO05D001797 4.3e-25 120.2 391 28.1
Phvul.007G062900 Phaseolus vulgaris HOM05D001870 ORTHO05D001797 4.3e-25 120.2 396 29.5
SalBow3G2645 Salvia bowleyana HOM05D001870 ORTHO05D001797 4.3e-25 120.2 400 29.2
ATR0665G253 Amborella trichopoda HOM05D001870 ORTHO05D001797 5.6e-25 119.8 398 28.1
Migut.G00410 Erythranthe guttata HOM05D001870 ORTHO05D001797 5.6e-25 119.8 382 29.6
CSS0023671 Camellia sinensis var. sinensis HOM05D001870 ORTHO05D001797 9.6e-25 119.0 412 28.6
RhsimUnG0023500 Rhododendron simsii HOM05D001870 ORTHO05D001797 9.6e-25 119.0 437 27.9
Cpa.g.sc44.132 Carica papaya HOM05D001870 ORTHO05D001797 1.2e-24 118.6 410 28.0
Solyc03g005250.4 Solanum lycopersicum HOM05D001870 ORTHO05D001797 1.2e-24 118.6 420 28.1
Aqoxy2G03473 Aquilegia oxysepala HOM05D001870 ORTHO05D001797 1.6e-24 118.2 397 28.7
HPP92_026605 Vanilla planifolia HOM05D001870 ORTHO05D001797 1.6e-24 118.2 416 29.6
Gorai.005G045800 Gossypium raimondii HOM05D001870 ORTHO05D001797 2.1e-24 117.9 402 28.1
Lalb_Chr06g0160791 Lupinus albus HOM05D001870 ORTHO05D001797 2.1e-24 117.9 403 29.5
Rhsim04G0196300 Rhododendron simsii HOM05D001870 ORTHO05D001797 2.1e-24 117.9 399 29.1
vmacro08385 Vaccinium macrocarpon HOM05D001870 ORTHO05D001797 2.8e-24 117.5 402 28.6
Actinidia40111 Actinidia chinensis HOM05D001870 ORTHO05D001797 3.6e-24 117.1 397 28.5
BcaB03g14643 Brassica carinata HOM05D001870 ORTHO05D001797 3.6e-24 117.1 391 28.4
CsaV3_3G012820 Cucumis sativus L. HOM05D001870 ORTHO05D001797 3.6e-24 117.1 413 28.8
Duzib052G0566 Durio zibethinus HOM05D001870 ORTHO05D001797 3.6e-24 117.1 411 27.3
Glyma.20G151500 Glycine max HOM05D001870 ORTHO05D001797 3.6e-24 117.1 412 28.9
Oeu043469.1 Olea europaea HOM05D001870 ORTHO05D001797 3.6e-24 117.1 410 27.8
SalBow2G1423 Salvia bowleyana HOM05D001870 ORTHO05D001797 4.7e-24 116.7 423 28.8
Sed0022775 Sechium edule HOM05D001870 ORTHO05D001797 4.7e-24 116.7 413 28.6
PGSC0003DMG400013437 Solanum tuberosum HOM05D001870 ORTHO05D001797 4.7e-24 116.7 399 27.8
PGSC0003DMG400018943 Solanum tuberosum HOM05D001870 ORTHO05D001797 4.7e-24 116.7 402 28.4
CANSAT78G0025 Cannabis sativa HOM05D001870 ORTHO05D001797 6.2e-24 116.3 414 28.7
CBR_g4586 Chara braunii HOM05D001870 ORTHO05D001797 6.2e-24 116.3 415 28.7
Sopen09g031690 Solanum pennellii HOM05D001870 ORTHO05D001797 6.2e-24 116.3 403 28.3
BcaC01g03412 Brassica carinata HOM05D001870 ORTHO05D001797 8.1e-24 115.9 392 28.6
C03p52830 Brassica napus HOM05D001870 ORTHO05D001797 8.1e-24 115.9 392 28.6
BolC3t17551H Brassica oleracea HOM05D001870 ORTHO05D001797 8.1e-24 115.9 392 28.6
CAN.G638.89 Capsicum annuum HOM05D001870 ORTHO05D001797 8.1e-24 115.9 401 27.9
Duzib212G0652 Durio zibethinus HOM05D001870 ORTHO05D001797 8.1e-24 115.9 407 28.3
Prupe.1G023000 Prunus persica HOM05D001870 ORTHO05D001797 8.1e-24 115.9 397 28.2
Thecc.04G240700 Theobroma cacao HOM05D001870 ORTHO05D001797 8.1e-24 115.9 404 27.5
AagrBONN_evm.TU.Sc2ySwM_117.962 Anthoceros agrestis HOM05D001870 ORTHO05D001797 1.1e-23 115.5 369 29.8
BcaB06g26405 Brassica carinata HOM05D001870 ORTHO05D001797 1.1e-23 115.5 391 28.1
Dinv14054 Davidia involucrata HOM05D001870 ORTHO05D001797 1.1e-23 115.5 415 28.4
FAN22G0027 Fragaria x ananassa HOM05D001870 ORTHO05D001797 1.1e-23 115.5 431 28.5
Gohir.D02G041400 Gossypium hirsutum HOM05D001870 ORTHO05D001797 1.1e-23 115.5 402 27.9
HanXRQChr10g0297791 Helianthus annuus HOM05D001870 ORTHO05D001797 1.1e-23 115.5 415 28.0
Nitab4.5_0000977g0040 Nicotiana tabacum HOM05D001870 ORTHO05D001797 1.1e-23 115.5 416 27.9
Potri.010G081200 Populus trichocarpa HOM05D001870 ORTHO05D001797 1.1e-23 115.5 412 28.2
Aa31LG8G9390 Aethionema arabicum HOM05D001870 ORTHO05D001797 1.4e-23 115.2 397 28.7
Ciclev10004927m.g Citrus clementina HOM05D001870 ORTHO05D001797 1.4e-23 115.2 420 28.8
Thhalv10020675m.g Eutrema salsugineum HOM05D001870 ORTHO05D001797 1.4e-23 115.2 391 28.1
Sabra10G0062100 Salix brachista HOM05D001870 ORTHO05D001797 1.4e-23 115.2 419 28.2
Solyc09g082860.3 Solanum lycopersicum HOM05D001870 ORTHO05D001797 1.4e-23 115.2 406 27.8
Sopen03g001290 Solanum pennellii HOM05D001870 ORTHO05D001797 1.4e-23 115.2 398 27.6
BcaC05g25890 Brassica carinata HOM05D001870 ORTHO05D001797 1.8e-23 114.8 428 29.0
C05p18470 Brassica napus HOM05D001870 ORTHO05D001797 1.8e-23 114.8 428 29.0
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 2.4e-23 114.4 397 28.5
Gohir.D09G222200 Gossypium hirsutum HOM05D001870 ORTHO05D001797 2.4e-23 114.4 399 28.1
AT3G22890 Arabidopsis thaliana HOM05D001870 ORTHO05D001797 3.1e-23 114.0 420 28.3
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 3.1e-23 114.0 397 28.5
Carub.0003s2302 Capsella rubella HOM05D001870 ORTHO05D001797 3.1e-23 114.0 417 28.8
Nn1g02477 Nelumbo nucifera HOM05D001870 ORTHO05D001797 3.1e-23 114.0 412 28.6
SEGI_24221 Sequoiadendron giganteum HOM05D001870 ORTHO05D001797 3.1e-23 114.0 395 28.1
Solyc03g005260.3 Solanum lycopersicum HOM05D001870 ORTHO05D001797 3.1e-23 114.0 398 27.6
TWI09G1273 Tripterygium wilfordii HOM05D001870 ORTHO05D001797 3.1e-23 114.0 398 27.9
Gohir.A02G034600 Gossypium hirsutum HOM05D001870 ORTHO05D001797 4.0e-23 113.6 402 27.6
Cc03_g04380 Coffea canephora HOM05D001870 ORTHO05D001797 5.2e-23 113.2 405 28.4
COL.COLO4_13186 Corchorus olitorius HOM05D001870 ORTHO05D001797 5.2e-23 113.2 403 28.3
Gorai.006G243400 Gossypium raimondii HOM05D001870 ORTHO05D001797 5.2e-23 113.2 399 28.1
BraA03t13446Z Brassica rapa HOM05D001870 ORTHO05D001797 6.9e-23 112.8 422 28.0
Ca_10838_v3 Cicer arietinum L. HOM05D001870 ORTHO05D001797 6.9e-23 112.8 414 28.5
MELO3C014280.2 Cucumis melo HOM05D001870 ORTHO05D001797 6.9e-23 112.8 413 28.3
Thhalv10003175m.g Eutrema salsugineum HOM05D001870 ORTHO05D001797 6.9e-23 112.8 397 27.7
Atru.chr13.318 Acer truncatum HOM05D001870 ORTHO05D001797 9.0e-23 112.5 381 29.1
AL3G37240 Arabidopsis lyrata HOM05D001870 ORTHO05D001797 9.0e-23 112.5 420 28.1
A03p43020 Brassica napus HOM05D001870 ORTHO05D001797 9.0e-23 112.5 422 28.0
Carub.0008s0486 Capsella rubella HOM05D001870 ORTHO05D001797 9.0e-23 112.5 397 27.7
Lj5g0008342 Lotus japonicus HOM05D001870 ORTHO05D001797 9.0e-23 112.5 414 28.7
Peaxi162Scf00467g00610 Petunia axillaris HOM05D001870 ORTHO05D001797 9.0e-23 112.5 422 27.7
Haze_11242 Corylus avellana HOM05D001870 ORTHO05D001797 1.5e-22 111.7 412 27.4
Sabra08G0121200 Salix brachista HOM05D001870 ORTHO05D001797 1.5e-22 111.7 427 27.2
vmacro21715 Vaccinium macrocarpon HOM05D001870 ORTHO05D001797 1.5e-22 111.7 412 28.6
Cfa008426 Carpinus fangiana HOM05D001870 ORTHO05D001797 2.0e-22 111.3 416 28.1
HanXRQChr16g0513751 Helianthus annuus HOM05D001870 ORTHO05D001797 2.0e-22 111.3 414 27.5
Hma1.2p1_1095F.1_g256600 Hydrangea macrophylla HOM05D001870 ORTHO05D001797 2.0e-22 111.3 397 27.7
TAR362G0412 Trochodendron aralioides HOM05D001870 ORTHO05D001797 2.0e-22 111.3 412 27.9
Lj6A647T15 Lonicera japonica HOM05D001870 ORTHO05D001797 2.6e-22 110.9 422 28.0
Medtr1g102550 Medicago truncatula HOM05D001870 ORTHO05D001797 2.6e-22 110.9 412 27.7
Psat6g202040 Pisum sativum HOM05D001870 ORTHO05D001797 3.4e-22 110.5 414 27.5
Potri.008G159000 Populus trichocarpa HOM05D001870 ORTHO05D001797 3.4e-22 110.5 429 27.5
PGR004G0228 Punica granatum HOM05D001870 ORTHO05D001797 3.4e-22 110.5 405 26.7
BcaC09g50138 Brassica carinata HOM05D001870 ORTHO05D001797 4.4e-22 110.2 422 27.7
C01p28590 Brassica napus HOM05D001870 ORTHO05D001797 4.4e-22 110.2 422 27.7
BolC1t02786H Brassica oleracea HOM05D001870 ORTHO05D001797 4.4e-22 110.2 422 27.7
BcaC05g28005 Brassica carinata HOM05D001870 ORTHO05D001797 5.8e-22 109.8 435 27.1
C05p40210 Brassica napus HOM05D001870 ORTHO05D001797 5.8e-22 109.8 435 27.1
Nitab4.5_0000224g0030 Nicotiana tabacum HOM05D001870 ORTHO05D001797 5.8e-22 109.8 401 27.2
Prupe.1G367700 Prunus persica HOM05D001870 ORTHO05D001797 5.8e-22 109.8 407 29.2
THA.LOC104801107 Tarenaya hassleriana HOM05D001870 ORTHO05D001797 9.9e-22 109.0 433 27.3
A01p23000 Brassica napus HOM05D001870 ORTHO05D001797 1.3e-21 108.6 422 27.5
Glyma.10G242600 Glycine max HOM05D001870 ORTHO05D001797 1.3e-21 108.6 423 28.6
Manes.15G033600 Manihot esculenta HOM05D001870 ORTHO05D001797 1.3e-21 108.6 449 28.3
Sc13g0004820 Simmondsia chinensis HOM05D001870 ORTHO05D001797 1.3e-21 108.6 400 28.2
BcaNung00347 Brassica carinata HOM05D001870 ORTHO05D001797 1.7e-21 108.2 424 28.3
A05p25820 Brassica napus HOM05D001870 ORTHO05D001797 2.2e-21 107.8 435 26.9
BraA01t02212Z Brassica rapa HOM05D001870 ORTHO05D001797 2.9e-21 107.5 422 28.2
CSS0012990 Camellia sinensis var. sinensis HOM05D001870 ORTHO05D001797 2.9e-21 107.5 434 29.7
Hund20651 Selenicereus undatus HOM05D001870 ORTHO05D001797 2.9e-21 107.5 456 26.8
TWI73G0019 Tripterygium wilfordii HOM05D001870 ORTHO05D001797 2.9e-21 107.5 416 27.6
Atru.chr4.2326 Acer truncatum HOM05D001870 ORTHO05D001797 3.8e-21 107.1 410 27.8
BolC5t32763H Brassica oleracea HOM05D001870 ORTHO05D001797 4.9e-21 106.7 445 26.7
AUR62040723 Chenopodium quinoa HOM05D001870 ORTHO05D001797 4.9e-21 106.7 400 27.8
HPP92_024852 Vanilla planifolia HOM05D001870 ORTHO05D001797 4.9e-21 106.7 332 31.9
ClCG05G004790 Citrullus lanatus HOM05D001870 ORTHO05D001797 6.4e-21 106.3 447 27.5
Rhsim06G0022900 Rhododendron simsii HOM05D001870 ORTHO05D001797 6.4e-21 106.3 410 28.0
TPR.G26095 Trifolium pratense HOM05D001870 ORTHO05D001797 1.1e-20 105.5 428 27.8
TAR376G1025 Trochodendron aralioides HOM05D001870 ORTHO05D001797 1.1e-20 105.5 352 29.0
CiPaw.01G194500 Carya illinoinensis HOM05D001870 ORTHO05D001797 1.4e-20 105.1 413 27.1
CiPaw.02G119500 Carya illinoinensis HOM05D001870 ORTHO05D001797 1.4e-20 105.1 397 27.2
Sp7g12780 Schrenkiella parvula HOM05D001870 ORTHO05D001797 1.4e-20 105.1 422 27.3
AL7G41330 Arabidopsis lyrata HOM05D001870 ORTHO05D001797 1.9e-20 104.8 405 27.2
TAR383G1028 Trochodendron aralioides HOM05D001870 ORTHO05D001797 2.4e-20 104.4 358 28.5
Aa31LG9G2660 Aethionema arabicum HOM05D001870 ORTHO05D001797 3.2e-20 104.0 420 26.4
Ah.13g071720 Amaranthus hybridus HOM05D001870 ORTHO05D001797 3.2e-20 104.0 416 26.9
FAN20G2749 Fragaria x ananassa HOM05D001870 ORTHO05D001797 3.2e-20 104.0 310 30.6
Sc15g0003270 Simmondsia chinensis HOM05D001870 ORTHO05D001797 3.2e-20 104.0 398 26.9
Aa31LG5G3490 Aethionema arabicum HOM05D001870 ORTHO05D001797 4.2e-20 103.6 362 27.6
Carub.0007s2752 Capsella rubella HOM05D001870 ORTHO05D001797 5.4e-20 103.2 396 26.5
Thhalv10025125m.g Eutrema salsugineum HOM05D001870 ORTHO05D001797 5.4e-20 103.2 447 27.1
AT4G14680 Arabidopsis thaliana HOM05D001870 ORTHO05D001797 7.1e-20 102.8 428 26.9
MBI11_g40140_MAGBIO Magnolia biondii HOM05D001870 ORTHO05D001797 1.6e-19 101.7 464 26.3
Sp3g20590 Schrenkiella parvula HOM05D001870 ORTHO05D001797 1.6e-19 101.7 388 27.1
SpUn0119_0010 Schrenkiella parvula HOM05D001870 ORTHO05D001797 1.6e-19 101.7 388 27.1
BraA05t21463Z Brassica rapa HOM05D001870 ORTHO05D001797 2.1e-19 101.3 425 27.1
AUR62043620 Chenopodium quinoa HOM05D001870 ORTHO05D001797 2.1e-19 101.3 436 26.8
RhsimUnG0184100 Rhododendron simsii HOM05D001870 ORTHO05D001797 2.7e-19 100.9 281 29.5
EL10Ac3g06544 Beta vulgaris HOM05D001870 ORTHO05D001797 3.5e-19 100.5 359 27.6
Eucgr.H03408 Eucalyptus grandis HOM05D001870 ORTHO05D001797 3.5e-19 100.5 437 26.8
Nn6g34183 Nelumbo nucifera HOM05D001870 ORTHO05D001797 3.5e-19 100.5 330 30.0
THA.LOC104805012 Tarenaya hassleriana HOM05D001870 ORTHO05D001797 4.6e-19 100.1 345 29.0
TAR633G1045 Trochodendron aralioides HOM05D001870 ORTHO05D001797 4.6e-19 100.1 306 28.4
MELO3C006493.2 Cucumis melo HOM05D001870 ORTHO05D001797 7.8e-19 99.4 457 25.8
MBI04_g20518_MAGBIO Magnolia biondii HOM05D001870 ORTHO05D001797 7.8e-19 99.4 279 30.1
CARHR221060 Cardamine hirsuta HOM05D001870 ORTHO05D001797 1.0e-18 99.0 420 25.5
GSVIVG01018057001 Vitis vinifera HOM05D001870 ORTHO05D001797 1.7e-18 98.2 334 27.2
THA.LOC104804720 Tarenaya hassleriana HOM05D001870 ORTHO05D001797 3.9e-18 97.1 345 28.7
DCAR_030691 Daucus carota HOM05D001870 ORTHO05D001797 6.6e-18 96.3 385 26.5
CARHR179700 Cardamine hirsuta HOM05D001870 ORTHO05D001797 1.5e-17 95.1 470 26.0
CAN.G1435.2 Capsicum annuum HOM05D001870 ORTHO05D001797 4.3e-17 93.6 299 28.1
Haze_27094 Corylus avellana HOM05D001870 ORTHO05D001797 6.2e-16 89.7 245 29.8
Peaxi162Scf00758g00214 Petunia axillaris HOM05D001870 ORTHO05D001797 4.0e-15 87.0 226 31.0
Lj6A648T25 Lonicera japonica HOM05D001870 ORTHO05D001797 7.6e-14 82.8 194 30.9
arahy.Tifrunner.gnm1.ann1.57BWYN Arachis hypogaea HOM05D001870 ORTHO05D001797 2.4e-12 77.8 144 36.8
CAN.G638.87 Capsicum annuum HOM05D001870 ORTHO05D001797 4.3e-09 67.0 165 29.1
Actinidia04503 Actinidia chinensis HOM05D001870 ORTHO05D001797 2.6e-06 57.8 153 32.7


User provided reference genes

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