Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g203800 Chlamydomonas reinhardtii HOM05D006666 ORTHO05D008276 1.2e-59 233.0 125 100.0
RcHm_v2.0_Chr7g0176901 Rosa chinensis HOM05D006666 ORTHO05D008276 7.5e-09 64.3 44 63.6
TPR.G8870 Trifolium pratense HOM05D006666 ORTHO05D008276 9.9e-09 63.9 65 46.2
FvH4_5g18600 Fragaria vesca HOM05D006666 ORTHO05D008276 1.7e-08 63.2 44 61.4
FAN04G1657 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.7e-08 63.2 44 61.4
FAN08G1977 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.7e-08 63.2 44 61.4
FAN13G2387 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.7e-08 63.2 44 61.4
FAN18G1406 Fragaria x ananassa HOM05D006666 ORTHO05D008276 1.7e-08 63.2 44 61.4
Dinv09758 Davidia involucrata HOM05D006666 ORTHO05D008276 2.9e-08 62.4 63 55.6
MCO08G267 Micromonas commoda HOM05D006666 ORTHO05D008276 2.9e-08 62.4 51 54.9
MELO3C001965.2 Cucumis melo HOM05D006666 ORTHO05D008276 3.7e-08 62.0 47 55.3
CsaV3_1G005250 Cucumis sativus L. HOM05D006666 ORTHO05D008276 3.7e-08 62.0 47 55.3
TAR629G2781 Trochodendron aralioides HOM05D006666 ORTHO05D008276 3.7e-08 62.0 68 52.9
CAN.G861.22 Capsicum annuum HOM05D006666 ORTHO05D008276 4.9e-08 61.6 43 62.8
ClCG04G012450 Citrullus lanatus HOM05D006666 ORTHO05D008276 4.9e-08 61.6 47 53.2
Nn4g25066 Nelumbo nucifera HOM05D006666 ORTHO05D008276 4.9e-08 61.6 46 54.3
Pp3c19_21970 Physcomitrium patens HOM05D006666 ORTHO05D008276 4.9e-08 61.6 78 41.0
Prupe.5G245400 Prunus persica HOM05D006666 ORTHO05D008276 4.9e-08 61.6 43 62.8
SMO143G0007 Selaginella moellendorffii HOM05D006666 ORTHO05D008276 4.9e-08 61.6 59 47.5
Sc10g0008660 Simmondsia chinensis HOM05D006666 ORTHO05D008276 4.9e-08 61.6 43 58.1
Sopen03g029740 Solanum pennellii HOM05D006666 ORTHO05D008276 4.9e-08 61.6 43 62.8
CSS0032824 Camellia sinensis var. sinensis HOM05D006666 ORTHO05D008276 6.4e-08 61.2 66 50.0
Lalb_Chr21g0311701 Lupinus albus HOM05D006666 ORTHO05D008276 6.4e-08 61.2 47 57.4
SEGI_19522 Sequoiadendron giganteum HOM05D006666 ORTHO05D008276 6.4e-08 61.2 47 55.3
MSTRG.11567 Avicennia marina HOM05D006666 ORTHO05D008276 8.3e-08 60.8 43 62.8
DCAR_011403 Daucus carota HOM05D006666 ORTHO05D008276 8.3e-08 60.8 43 60.5
Duzib205G1681 Durio zibethinus HOM05D006666 ORTHO05D008276 1.1e-07 60.5 60 51.7
Hma1.2p1_0816F.1_g222970 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 1.1e-07 60.5 83 43.4
Phvul.L006501 Phaseolus vulgaris HOM05D006666 ORTHO05D008276 1.1e-07 60.5 43 58.1
Cc00_g07700 Coffea canephora HOM05D006666 ORTHO05D008276 1.4e-07 60.1 43 58.1
Medtr1g077550 Medicago truncatula HOM05D006666 ORTHO05D008276 1.4e-07 60.1 43 58.1
vmacro17828 Vaccinium macrocarpon HOM05D006666 ORTHO05D008276 1.4e-07 60.1 66 53.0
VMungo0720G1342 Vigna mungo HOM05D006666 ORTHO05D008276 1.4e-07 60.1 47 59.6
GSVIVG01024243001 Vitis vinifera HOM05D006666 ORTHO05D008276 1.4e-07 60.1 40 67.5
Ciclev10023646m.g Citrus clementina HOM05D006666 ORTHO05D008276 1.9e-07 59.7 48 56.2
Potri.004G066900 Populus trichocarpa HOM05D006666 ORTHO05D008276 1.9e-07 59.7 43 60.5
Hund06740 Selenicereus undatus HOM05D006666 ORTHO05D008276 1.9e-07 59.7 67 50.7
CiPaw.16G075700 Carya illinoinensis HOM05D006666 ORTHO05D008276 2.4e-07 59.3 43 58.1
Nitab4.5_0008182g0010 Nicotiana tabacum HOM05D006666 ORTHO05D008276 2.4e-07 59.3 66 50.0
PSO063G5885 Papaver somniferum HOM05D006666 ORTHO05D008276 2.4e-07 59.3 43 55.8
PSO782G1773 Papaver somniferum HOM05D006666 ORTHO05D008276 2.4e-07 59.3 43 55.8
Peaxi162Scf00171g00030 Petunia axillaris HOM05D006666 ORTHO05D008276 2.4e-07 59.3 92 41.3
PGR083G1370 Punica granatum HOM05D006666 ORTHO05D008276 2.4e-07 59.3 43 60.5
SalBow5G0154 Salvia bowleyana HOM05D006666 ORTHO05D008276 2.4e-07 59.3 51 52.9
Thecc.03G072200 Theobroma cacao HOM05D006666 ORTHO05D008276 2.4e-07 59.3 38 68.4
Lj5g0025802 Lotus japonicus HOM05D006666 ORTHO05D008276 3.2e-07 58.9 47 55.3
TWI81G0077 Tripterygium wilfordii HOM05D006666 ORTHO05D008276 3.2e-07 58.9 47 55.3
ATR0124G047 Amborella trichopoda HOM05D006666 ORTHO05D008276 4.1e-07 58.5 79 39.2
Ca_09926_v3 Cicer arietinum L. HOM05D006666 ORTHO05D008276 4.1e-07 58.5 65 44.6
Glyma.10G174200 Glycine max HOM05D006666 ORTHO05D008276 4.1e-07 58.5 47 55.3
Migut.O00284 Erythranthe guttata HOM05D006666 ORTHO05D008276 5.4e-07 58.2 43 58.1
Mapoly0096s0047 Marchantia polymorpha HOM05D006666 ORTHO05D008276 5.4e-07 58.2 54 51.9
Gohir.A07G062700 Gossypium hirsutum HOM05D006666 ORTHO05D008276 7.1e-07 57.8 43 62.8
Gohir.D07G067300 Gossypium hirsutum HOM05D006666 ORTHO05D008276 7.1e-07 57.8 43 62.8
Gorai.001G070900 Gossypium raimondii HOM05D006666 ORTHO05D008276 7.1e-07 57.8 43 62.8
Nitab4.5_0009307g0050 Nicotiana tabacum HOM05D006666 ORTHO05D008276 7.1e-07 57.8 91 40.7
PRCOL_00004364 Prasinoderma coloniale HOM05D006666 ORTHO05D008276 7.1e-07 57.8 53 49.1
Cfa017808 Carpinus fangiana HOM05D006666 ORTHO05D008276 9.2e-07 57.4 43 55.8
Manes.02G219900 Manihot esculenta HOM05D006666 ORTHO05D008276 9.2e-07 57.4 43 58.1
SGA_v2.0_scaffold25G10726 Striga asiatica HOM05D006666 ORTHO05D008276 9.2e-07 57.4 80 43.8
MBI06_g22566_MAGBIO Magnolia biondii HOM05D006666 ORTHO05D008276 1.2e-06 57.0 43 53.5
MD14G1247300 Malus domestica HOM05D006666 ORTHO05D008276 1.2e-06 57.0 43 60.5
Rhsim08G0006200 Rhododendron simsii HOM05D006666 ORTHO05D008276 1.2e-06 57.0 76 46.1
THA.LOC104812606 Tarenaya hassleriana HOM05D006666 ORTHO05D008276 1.2e-06 57.0 43 60.5
Haze_18405 Corylus avellana HOM05D006666 ORTHO05D008276 1.6e-06 56.6 43 53.5
SalBow1G4610 Salvia bowleyana HOM05D006666 ORTHO05D008276 1.6e-06 56.6 88 40.9
AagrBONN_evm.TU.Sc2ySwM_344.686 Anthoceros agrestis HOM05D006666 ORTHO05D008276 2.1e-06 56.2 120 33.3
Glyma.20G216200 Glycine max HOM05D006666 ORTHO05D008276 2.1e-06 56.2 47 53.2
Solyc03g019880.3 Solanum lycopersicum HOM05D006666 ORTHO05D008276 2.1e-06 56.2 87 42.5
PGSC0003DMG400015210 Solanum tuberosum HOM05D006666 ORTHO05D008276 2.1e-06 56.2 95 42.1
Aa31sc45G80 Aethionema arabicum HOM05D006666 ORTHO05D008276 2.7e-06 55.8 43 58.1
BcaC05g26820 Brassica carinata HOM05D006666 ORTHO05D008276 2.7e-06 55.8 43 55.8
C05p26900 Brassica napus HOM05D006666 ORTHO05D008276 2.7e-06 55.8 43 55.8
BolC5t31408H Brassica oleracea HOM05D006666 ORTHO05D008276 2.7e-06 55.8 43 55.8
BraA09t39302Z Brassica rapa HOM05D006666 ORTHO05D008276 2.7e-06 55.8 43 55.8
CARHR027620 Cardamine hirsuta HOM05D006666 ORTHO05D008276 2.7e-06 55.8 43 55.8
Psat6g054440 Pisum sativum HOM05D006666 ORTHO05D008276 2.7e-06 55.8 89 38.2
AL1G41680 Arabidopsis lyrata HOM05D006666 ORTHO05D008276 3.5e-06 55.5 43 55.8
AT1G28150 Arabidopsis thaliana HOM05D006666 ORTHO05D008276 3.5e-06 55.5 43 55.8
CDE06G1954 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 3.5e-06 55.5 43 55.8
AUR62006207 Chenopodium quinoa HOM05D006666 ORTHO05D008276 3.5e-06 55.5 43 53.5
AUR62037011 Chenopodium quinoa HOM05D006666 ORTHO05D008276 3.5e-06 55.5 43 53.5
Eucgr.H00663 Eucalyptus grandis HOM05D006666 ORTHO05D008276 3.5e-06 55.5 43 53.5
Lsat_1_v5_gn_8_1660 Lactuca sativa HOM05D006666 ORTHO05D008276 3.5e-06 55.5 53 47.2
Atru.chr9.23 Acer truncatum HOM05D006666 ORTHO05D008276 4.6e-06 55.1 88 39.8
BcaB03g13950 Brassica carinata HOM05D006666 ORTHO05D008276 4.6e-06 55.1 43 55.8
BcaC06g35338 Brassica carinata HOM05D006666 ORTHO05D008276 4.6e-06 55.1 43 55.8
A07p11450 Brassica napus HOM05D006666 ORTHO05D008276 4.6e-06 55.1 43 55.8
A09p37900 Brassica napus HOM05D006666 ORTHO05D008276 4.6e-06 55.1 43 55.8
C07p17240 Brassica napus HOM05D006666 ORTHO05D008276 4.6e-06 55.1 43 55.8
BolC7t42228H Brassica oleracea HOM05D006666 ORTHO05D008276 4.6e-06 55.1 43 55.8
BraA07t28933Z Brassica rapa HOM05D006666 ORTHO05D008276 4.6e-06 55.1 43 55.8
Os04g0528100 Oryza sativa ssp. japonica HOM05D006666 ORTHO05D008276 4.6e-06 55.1 56 50.0
Sp1g24340 Schrenkiella parvula HOM05D006666 ORTHO05D008276 4.6e-06 55.1 43 55.8
Sed0024015 Sechium edule HOM05D006666 ORTHO05D008276 4.6e-06 55.1 98 36.7
HPP92_021068 Vanilla planifolia HOM05D006666 ORTHO05D008276 4.6e-06 55.1 38 57.9
Ah.15g090740 Amaranthus hybridus HOM05D006666 ORTHO05D008276 7.8e-06 54.3 43 51.2
ECA233G5286 Erigeron canadensis HOM05D006666 ORTHO05D008276 7.8e-06 54.3 37 67.6


User provided reference genes

Program Settings