Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g202600 Chlamydomonas reinhardtii HOM05D002843 ORTHO05D003086 1.1e-299 1032.7 583 100.0
Cre06.g306750 Chlamydomonas reinhardtii HOM05D002843 ORTHO05D003086 4.9e-50 203.4 182 56.6
SGA_v2.0_scaffold11G05952 Striga asiatica HOM05D002843 ORTHO05D003086 1.4e-09 68.9 155 26.5
CARHR234050 Cardamine hirsuta HOM05D002843 ORTHO05D003086 9.3e-09 66.2 152 23.0
HanXRQChr17g0558491 Helianthus annuus HOM05D002843 ORTHO05D003086 9.3e-09 66.2 191 23.0
DCAR_017601 Daucus carota HOM05D002843 ORTHO05D003086 1.6e-08 65.5 150 25.3
AL7G26470 Arabidopsis lyrata HOM05D002843 ORTHO05D003086 2.7e-08 64.7 156 23.7
AagrBONN_evm.TU.Sc2ySwM_344.3188 Anthoceros agrestis HOM05D002843 ORTHO05D003086 4.6e-08 63.9 123 29.3
Sp7g24410 Schrenkiella parvula HOM05D002843 ORTHO05D003086 6.0e-08 63.5 192 22.9
Glyma.16G095700 Glycine max HOM05D002843 ORTHO05D003086 7.8e-08 63.2 152 23.0
ECA236G4339 Erigeron canadensis HOM05D002843 ORTHO05D003086 1.0e-07 62.8 194 24.2
Pp3c16_16010 Physcomitrium patens HOM05D002843 ORTHO05D003086 1.0e-07 62.8 183 25.7
BraA01t01727Z Brassica rapa HOM05D002843 ORTHO05D003086 1.7e-07 62.0 172 22.7
PSO675G3130 Papaver somniferum HOM05D002843 ORTHO05D003086 1.7e-07 62.0 156 23.7
Pp3c6_22110 Physcomitrium patens HOM05D002843 ORTHO05D003086 1.7e-07 62.0 183 25.7
Cre06.g306700 Chlamydomonas reinhardtii HOM05D057480 ORTHO05D003086 2.3e-07 61.6 193 29.0
PSO541G6435 Papaver somniferum HOM05D002843 ORTHO05D003086 2.3e-07 61.6 156 23.7
Aa31LG5G11820 Aethionema arabicum HOM05D002843 ORTHO05D003086 3.0e-07 61.2 191 23.0
BcaC06g32742 Brassica carinata HOM05D002843 ORTHO05D003086 3.0e-07 61.2 185 21.1
Lsat_1_v5_gn_7_116180 Lactuca sativa HOM05D002843 ORTHO05D003086 3.0e-07 61.2 192 21.9
C01p22390 Brassica napus HOM05D002843 ORTHO05D003086 3.9e-07 60.8 169 21.9
BolC1t02170H Brassica oleracea HOM05D002843 ORTHO05D003086 3.9e-07 60.8 169 21.9
Thhalv10026168m.g Eutrema salsugineum HOM05D002843 ORTHO05D003086 3.9e-07 60.8 150 22.0
BcaC09g50712 Brassica carinata HOM05D002843 ORTHO05D003086 5.1e-07 60.5 169 21.3
BcaNung02416 Brassica carinata HOM05D002843 ORTHO05D003086 5.1e-07 60.5 169 21.3
A01p17720 Brassica napus HOM05D002843 ORTHO05D003086 5.1e-07 60.5 169 21.3
Zm00001eb205910 Zea mays HOM05D002843 ORTHO05D003086 5.1e-07 60.5 153 24.2
Carub.0007s1443 Capsella rubella HOM05D002843 ORTHO05D003086 6.6e-07 60.1 169 21.9
HanXRQChr05g0160151 Helianthus annuus HOM05D002843 ORTHO05D003086 6.6e-07 60.1 150 25.3
Prupe.6G033600 Prunus persica HOM05D002843 ORTHO05D003086 6.6e-07 60.1 151 22.5
Zm00001eb236060 Zea mays HOM05D002843 ORTHO05D003086 6.6e-07 60.1 156 25.0
Glyma.08G265200 Glycine max HOM05D002843 ORTHO05D003086 8.7e-07 59.7 152 23.0
Lalb_Chr05g0229021 Lupinus albus HOM05D002843 ORTHO05D003086 8.7e-07 59.7 150 23.3
PRCOL_00005702 Prasinoderma coloniale HOM05D002843 ORTHO05D003086 8.7e-07 59.7 150 30.7
Hund22974 Selenicereus undatus HOM05D002843 ORTHO05D003086 8.7e-07 59.7 196 24.5
MD03G1041500 Malus domestica HOM05D002843 ORTHO05D003086 1.1e-06 59.3 151 23.2
BcaC06g32744 Brassica carinata HOM05D002843 ORTHO05D003086 1.5e-06 58.9 191 20.9
C07p55310 Brassica napus HOM05D002843 ORTHO05D003086 1.5e-06 58.9 191 20.9
BolC7t45983H Brassica oleracea HOM05D002843 ORTHO05D003086 1.5e-06 58.9 191 20.9
CsaV3_3G004350 Cucumis sativus L. HOM05D002843 ORTHO05D003086 1.5e-06 58.9 156 23.7
Gohir.A01G095000 Gossypium hirsutum HOM05D002843 ORTHO05D003086 1.5e-06 58.9 154 22.7
ATR0751G041 Amborella trichopoda HOM05D002843 ORTHO05D003086 1.9e-06 58.5 150 23.3
CANSAT11G1848 Cannabis sativa HOM05D002843 ORTHO05D003086 1.9e-06 58.5 150 24.7
Lj1A899T33 Lonicera japonica HOM05D002843 ORTHO05D003086 1.9e-06 58.5 189 22.2
MD11G1042400 Malus domestica HOM05D002843 ORTHO05D003086 1.9e-06 58.5 151 23.2
TPR.G6119 Trifolium pratense HOM05D002843 ORTHO05D003086 1.9e-06 58.5 186 22.6
HPP92_017861 Vanilla planifolia HOM05D002843 ORTHO05D003086 1.9e-06 58.5 154 22.7
Ca_22542_v3 Cicer arietinum L. HOM05D002843 ORTHO05D003086 2.5e-06 58.2 188 21.8
SGA_v2.0_scaffold92G28178 Striga asiatica HOM05D002843 ORTHO05D003086 2.5e-06 58.2 185 22.7
TAR626G0850 Trochodendron aralioides HOM05D002843 ORTHO05D003086 2.5e-06 58.2 153 22.9
Gorai.002G104000 Gossypium raimondii HOM05D002843 ORTHO05D003086 3.3e-06 57.8 154 22.7
GSVIVG01014761001 Vitis vinifera HOM05D002843 ORTHO05D003086 3.3e-06 57.8 154 22.1
MSTRG.14517 Avicennia marina HOM05D002843 ORTHO05D003086 4.3e-06 57.4 196 23.0
EL10Ac4g07497 Beta vulgaris HOM05D002843 ORTHO05D003086 4.3e-06 57.4 192 25.5
Medtr8g070510 Medicago truncatula HOM05D002843 ORTHO05D003086 4.3e-06 57.4 185 22.2
CSS0024416 Camellia sinensis var. sinensis HOM05D002843 ORTHO05D003086 5.6e-06 57.0 191 22.0
Haze_09909 Corylus avellana HOM05D002843 ORTHO05D003086 5.6e-06 57.0 161 21.7
Psat4g111520 Pisum sativum HOM05D002843 ORTHO05D003086 7.3e-06 56.6 184 22.8
RcHm_v2.0_Chr5g0074811 Rosa chinensis HOM05D002843 ORTHO05D003086 7.3e-06 56.6 126 24.6
SEGI_24200 Sequoiadendron giganteum HOM05D002843 ORTHO05D003086 7.3e-06 56.6 162 22.2
CiPaw.11G209900 Carya illinoinensis HOM05D002843 ORTHO05D003086 9.6e-06 56.2 149 22.1
Os02g0198200 Oryza sativa ssp. japonica HOM05D002843 ORTHO05D003086 9.6e-06 56.2 158 22.8
SMO301G0027 Selaginella moellendorffii HOM05D002843 ORTHO05D003086 9.6e-06 56.2 155 24.5


User provided reference genes

Program Settings