Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 4.7e-125 451.4 267 100.0
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 3.1e-36 156.4 226 39.8
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.9e-36 155.2 229 37.6
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 6.9e-36 155.2 230 40.9
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.2e-35 154.5 226 39.4
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.5e-35 154.1 228 40.4
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.0e-35 153.7 226 38.9
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.0e-35 153.7 232 40.1
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.6e-35 153.3 226 38.5
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 3.4e-35 152.9 229 38.9
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 4.5e-35 152.5 224 38.8
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 7.7e-35 151.8 223 39.0
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.3e-34 151.0 226 39.4
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.3e-34 151.0 229 39.7
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 2.2e-34 150.2 225 40.9
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.9e-34 149.8 226 41.6
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 3.8e-34 149.4 224 38.8
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 5.0e-34 149.1 226 39.8
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 5.0e-34 149.1 225 39.1
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.0e-34 149.1 227 38.3
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 6.5e-34 148.7 224 38.4
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.1e-33 147.9 226 41.2
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.9e-33 147.1 225 39.6
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.9e-33 147.1 224 38.8
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.9e-33 147.1 229 41.0
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.9e-33 147.1 226 38.1
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.9e-33 147.1 218 38.1
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.9e-33 147.1 216 39.8
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 2.5e-33 146.7 229 37.6
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 4.2e-33 146.0 201 39.3
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 5.5e-33 145.6 230 38.7
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 5.5e-33 145.6 216 39.8
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 5.5e-33 145.6 226 40.7
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 7.2e-33 145.2 229 40.6
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 7.2e-33 145.2 223 36.8
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 7.2e-33 145.2 223 37.7
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 9.4e-33 144.8 225 37.3
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 9.4e-33 144.8 222 39.6
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 9.4e-33 144.8 223 39.5
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.2e-32 144.4 225 37.3
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.2e-32 144.4 226 41.6
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.6e-32 144.1 223 39.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.6e-32 144.1 230 37.0
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.6e-32 144.1 226 38.5
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.6e-32 144.1 228 37.7
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.6e-32 144.1 201 41.8
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.7e-32 143.3 225 36.4
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 3.6e-32 142.9 228 38.2
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 4.7e-32 142.5 231 36.4
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 6.1e-32 142.1 227 38.3
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 7.9e-32 141.7 207 40.1
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 7.9e-32 141.7 204 39.2
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.0e-31 141.4 215 38.1
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.0e-31 141.4 219 39.7
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.0e-31 141.4 216 39.8
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.0e-31 141.4 225 37.8
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.0e-31 141.4 225 36.9
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.4e-31 141.0 228 38.6
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.4e-31 141.0 226 36.7
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.8e-31 140.6 226 39.8
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.3e-31 140.2 225 36.4
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 2.3e-31 140.2 226 40.7
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.0e-31 139.8 207 39.6
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 3.9e-31 139.4 229 38.9
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 5.1e-31 139.0 207 39.6
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 5.1e-31 139.0 225 37.3
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.8e-31 138.3 225 36.0
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.5e-30 137.5 213 40.8
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 2.0e-30 137.1 208 38.9
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.6e-30 136.7 224 38.4
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 3.3e-30 136.3 201 40.8
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.3e-30 136.3 225 37.8
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 3.3e-30 136.3 230 40.0
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 3.3e-30 136.3 230 38.7
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 3.3e-30 136.3 219 36.5
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 4.4e-30 136.0 202 38.6
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 4.4e-30 136.0 226 35.0
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 4.4e-30 136.0 225 35.1
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 7.4e-30 135.2 226 35.4
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 9.7e-30 134.8 228 37.7
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.3e-29 134.4 211 38.9
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.3e-29 134.4 201 38.8
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.3e-29 134.4 225 35.1
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 3.7e-29 132.9 224 37.9
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 4.8e-29 132.5 218 36.2
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 4.8e-29 132.5 226 38.1
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 6.3e-29 132.1 208 35.1
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.1e-28 131.3 225 34.7
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 1.4e-28 131.0 208 38.9
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.4e-28 131.0 238 34.9
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.4e-28 131.0 234 37.6
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.8e-28 130.6 202 35.6
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.8e-28 130.6 225 36.4
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 2.4e-28 130.2 214 35.0
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.3e-28 129.0 182 39.6
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 7.0e-28 128.6 214 35.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 9.1e-28 128.3 201 40.3
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 2.0e-27 127.1 228 36.8
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 7.7e-27 125.2 265 33.6
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.0e-26 124.8 216 37.5
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 8.5e-26 121.7 324 29.6
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.1e-25 121.3 224 33.5
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.1e-25 121.3 207 34.8
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.9e-25 120.6 173 39.9
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 2.5e-25 120.2 205 40.0
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 3.2e-25 119.8 206 34.0
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 4.2e-25 119.4 216 34.3
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 7.2e-25 118.6 220 33.6
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.8e-23 114.0 212 31.1
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.8e-23 114.0 221 33.9
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 6.7e-23 112.1 213 32.4
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 6.7e-23 112.1 213 32.9
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 2.0e-22 110.5 178 34.3
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.3e-22 109.8 145 40.0
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 4.4e-22 109.4 213 31.9
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 4.4e-22 109.4 204 35.8
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 8.2e-21 105.1 225 33.3
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.4e-20 104.4 122 45.1
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.8e-20 104.0 247 34.0
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.4e-20 103.6 225 33.3
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 2.4e-20 103.6 182 33.5
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 7.0e-20 102.1 136 39.0
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 7.0e-20 102.1 227 30.4
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.7e-18 97.4 229 31.9
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.9e-18 96.7 252 32.1
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 9.4e-17 91.7 258 31.8
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 4.0e-15 86.3 212 30.7
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 4.4e-14 82.8 217 30.9
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 6.3e-13 79.0 138 39.1
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 3.1e-12 76.6 148 33.8
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.0e-10 71.6 181 32.6
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.5e-09 67.0 121 40.5
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.0e-07 61.6 147 32.7
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.4e-07 61.2 93 36.6
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 2.3e-07 60.5 68 41.2
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 2.0e-06 57.4 262 23.3


User provided reference genes

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