Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 3.2e-177 625.2 356 100.0
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 3.6e-72 276.2 356 46.1
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 3.7e-69 266.2 356 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 4.1e-68 262.7 356 37.4
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 5.9e-67 258.8 356 37.6
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 4.3e-65 252.7 356 37.4
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 4.7e-64 249.2 356 36.8
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 6.2e-64 248.8 356 36.2
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 1.4e-63 247.7 356 36.8
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 2.3e-63 246.9 356 36.2
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 2.3e-63 246.9 356 36.5
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 3.1e-63 246.5 356 36.8
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 3.1e-63 246.5 356 37.4
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.0e-63 246.1 356 41.6
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 4.0e-63 246.1 356 43.3
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 5.2e-63 245.7 356 36.8
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 6.8e-63 245.4 356 35.7
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 6.8e-63 245.4 356 41.6
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 8.9e-63 245.0 356 36.0
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 8.9e-63 245.0 356 36.0
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 1.2e-62 244.6 356 38.8
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 1.2e-62 244.6 356 36.2
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 1.5e-62 244.2 356 35.4
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 1.5e-62 244.2 357 44.3
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 1.5e-62 244.2 356 38.2
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 1.5e-62 244.2 358 39.7
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 2.6e-62 243.4 356 38.8
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 2.6e-62 243.4 357 37.8
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 3.4e-62 243.0 356 42.4
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 4.4e-62 242.7 356 42.4
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 5.8e-62 242.3 356 35.4
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 5.8e-62 242.3 356 35.7
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 5.8e-62 242.3 356 42.7
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 7.5e-62 241.9 356 38.5
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 9.8e-62 241.5 356 40.4
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 1.7e-61 240.7 356 44.4
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 2.2e-61 240.4 356 37.9
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 2.2e-61 240.4 358 39.1
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 2.2e-61 240.4 356 35.7
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 3.7e-61 239.6 356 36.0
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 3.7e-61 239.6 358 43.6
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 4.9e-61 239.2 358 40.8
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 6.4e-61 238.8 361 35.5
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 6.4e-61 238.8 359 40.9
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 1.1e-60 238.0 356 37.9
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 1.1e-60 238.0 356 44.7
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 1.1e-60 238.0 356 36.2
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 1.4e-60 237.7 356 41.0
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 1.4e-60 237.7 356 42.1
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 1.4e-60 237.7 356 38.8
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 1.9e-60 237.3 356 43.3
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 1.9e-60 237.3 356 34.6
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 1.9e-60 237.3 356 35.7
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 3.2e-60 236.5 356 36.8
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 4.1e-60 236.1 356 35.4
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 4.1e-60 236.1 354 38.7
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 5.4e-60 235.7 356 37.6
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 5.4e-60 235.7 356 41.3
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 5.4e-60 235.7 356 35.4
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 5.4e-60 235.7 356 35.4
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.0e-60 235.3 358 34.6
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 7.0e-60 235.3 356 35.4
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 9.2e-60 235.0 356 35.1
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 1.2e-59 234.6 356 41.9
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 1.6e-59 234.2 356 36.5
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 1.6e-59 234.2 356 36.0
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 1.6e-59 234.2 356 36.2
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 1.6e-59 234.2 357 37.0
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 2.0e-59 233.8 356 34.3
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 2.7e-59 233.4 356 35.4
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 3.5e-59 233.0 360 36.9
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 3.5e-59 233.0 356 34.8
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 3.5e-59 233.0 359 41.5
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 3.5e-59 233.0 356 43.8
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 4.6e-59 232.6 356 35.7
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 4.6e-59 232.6 359 35.1
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 4.6e-59 232.6 356 35.1
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 4.6e-59 232.6 356 41.3
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 6.0e-59 232.3 357 35.3
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 7.8e-59 231.9 360 35.0
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 7.8e-59 231.9 356 35.7
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 7.8e-59 231.9 356 35.1
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 1.0e-58 231.5 356 41.6
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 1.3e-58 231.1 356 35.4
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 1.3e-58 231.1 356 34.6
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 1.7e-58 230.7 357 36.7
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 1.7e-58 230.7 356 39.3
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 1.7e-58 230.7 359 35.7
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 1.7e-58 230.7 356 35.7
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 2.3e-58 230.3 360 35.0
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 2.3e-58 230.3 356 38.8
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 2.3e-58 230.3 356 34.8
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 2.3e-58 230.3 359 36.8
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 2.3e-58 230.3 356 44.7
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 3.0e-58 229.9 354 40.4
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 3.0e-58 229.9 357 35.0
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 3.0e-58 229.9 356 39.3
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 3.9e-58 229.6 356 42.7
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 3.9e-58 229.6 360 44.7
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 3.9e-58 229.6 356 36.0
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 5.0e-58 229.2 359 44.3
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 5.0e-58 229.2 356 34.3
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 6.6e-58 228.8 362 42.8
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 6.6e-58 228.8 350 40.9
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 1.1e-57 228.0 359 43.7
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 1.5e-57 227.6 356 43.5
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.9e-57 227.3 356 34.3
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 1.9e-57 227.3 357 43.4
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 1.9e-57 227.3 357 35.0
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 1.9e-57 227.3 356 35.7
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 2.5e-57 226.9 357 42.9
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.5e-57 226.9 356 35.7
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 7.3e-57 225.3 356 37.1
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 9.5e-57 224.9 365 43.3
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 1.6e-56 224.2 363 38.3
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 2.8e-56 223.4 364 34.3
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 3.6e-56 223.0 357 42.0
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 1.1e-55 221.5 357 35.0
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 1.8e-55 220.7 357 40.3
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 1.8e-55 220.7 356 34.3
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 2.0e-54 217.2 357 32.8
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 9.8e-54 214.9 339 33.6
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 9.8e-54 214.9 357 37.0
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 2.2e-53 213.8 356 36.2
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 4.9e-53 212.6 399 31.6
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 8.3e-53 211.8 356 33.4
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.1e-52 211.5 350 35.7
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 1.9e-52 210.7 354 35.0
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 9.2e-52 208.4 362 32.9
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 1.3e-50 204.5 360 32.8
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 8.6e-50 201.8 356 34.0
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 2.8e-48 196.8 335 34.9
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.5e-46 191.0 356 34.8
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 9.9e-46 188.3 292 35.3
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 4.9e-45 186.0 297 41.8
Psat6g123080 Pisum sativum HOM05D003641 ORTHO05D004915 7.8e-43 178.7 303 36.0
TPR.G35793 Trifolium pratense HOM05D003641 ORTHO05D004915 5.2e-39 166.0 301 32.6
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 3.8e-37 159.8 265 39.2
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 4.9e-37 159.5 356 29.5
Gorai.012G099500 Gossypium raimondii HOM05D003641 ORTHO05D004915 1.1e-33 148.3 329 31.6
Gohir.A04G052026 Gossypium hirsutum HOM05D003641 ORTHO05D004915 3.4e-30 136.7 157 41.4
SEGI_39925 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 4.9e-29 132.9 272 36.4
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 8.1e-24 115.5 208 36.1
MCO11G399 Micromonas commoda HOM05D003641 ORTHO05D044219 2.2e-21 107.5 167 39.5
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 1.6e-19 101.3 108 42.6
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.3e-18 98.2 123 40.7
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.8e-18 97.8 120 40.8
Cre08.g358539 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D044219 6.7e-18 95.9 174 34.5
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 2.5e-17 94.0 126 37.3
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 1.8e-15 87.8 141 33.3
Ca_31327_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.4e-12 78.2 86 39.5
Ca_14569_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.2e-12 77.0 86 39.5
Ca_20435_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.1e-12 75.9 86 38.4
Ca_09720_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.5e-11 73.6 86 38.4
HanXRQChr03g0083061 Helianthus annuus HOM05D003641 ORTHO05D004915 1.9e-09 67.8 128 32.8
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 4.8e-08 63.2 55 49.1
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 4.8e-08 63.2 61 45.9
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 4.8e-08 63.2 61 45.9
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.4e-07 61.6 57 49.1
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 9.0e-07 58.9 56 44.6
PRCOL_00004577 Prasinoderma coloniale HOM05D003641 ORTHO05D049026 2.0e-06 57.8 161 28.0
SEGI_05882 Sequoiadendron giganteum HOM05D003641 ORTHO05D004915 2.0e-06 57.8 168 27.4
Glyma.09G095600 Glycine max HOM05D003641 ORTHO05D004915 2.6e-06 57.4 79 38.0


User provided reference genes

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