Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g198100 Chlamydomonas reinhardtii HOM05D002768 ORTHO05D002993 2.4e-44 181.8 91 100.0
PRCOL_00006690 Prasinoderma coloniale HOM05D002768 ORTHO05D002993 2.6e-11 72.0 84 40.5
Nn6g34823 Nelumbo nucifera HOM05D002768 ORTHO05D002993 1.0e-10 70.1 90 40.0
Aa31LG10G12890 Aethionema arabicum HOM05D002768 ORTHO05D002993 1.7e-10 69.3 90 40.0
BcaC07g40187 Brassica carinata HOM05D002768 ORTHO05D002993 1.7e-10 69.3 90 40.0
A07p23960 Brassica napus HOM05D002768 ORTHO05D002993 2.2e-10 68.9 90 40.0
BraA07t30047Z Brassica rapa HOM05D002768 ORTHO05D002993 2.2e-10 68.9 90 40.0
Thhalv10006315m.g Eutrema salsugineum HOM05D002768 ORTHO05D002993 2.2e-10 68.9 90 40.0
BcaC08g44903 Brassica carinata HOM05D002768 ORTHO05D002993 2.9e-10 68.6 90 40.0
A09p50930 Brassica napus HOM05D002768 ORTHO05D002993 2.9e-10 68.6 90 38.9
C06p25230 Brassica napus HOM05D002768 ORTHO05D002993 2.9e-10 68.6 90 40.0
BolC6t37682H Brassica oleracea HOM05D002768 ORTHO05D002993 2.9e-10 68.6 90 40.0
BraA09t40539Z Brassica rapa HOM05D002768 ORTHO05D002993 2.9e-10 68.6 90 38.9
AL5G39870 Arabidopsis lyrata HOM05D002768 ORTHO05D002993 3.8e-10 68.2 90 40.0
AT3G58170 Arabidopsis thaliana HOM05D002768 ORTHO05D002993 3.8e-10 68.2 90 40.0
THA.LOC104822247 Tarenaya hassleriana HOM05D002768 ORTHO05D002993 3.8e-10 68.2 89 37.1
C08p33750 Brassica napus HOM05D002768 ORTHO05D002993 5.0e-10 67.8 90 38.9
BolC8t50974H Brassica oleracea HOM05D002768 ORTHO05D002993 5.0e-10 67.8 90 38.9
HanXRQChr01g0014261 Helianthus annuus HOM05D002768 ORTHO05D002993 5.0e-10 67.8 90 38.9
BcaC07g40269 Brassica carinata HOM05D002768 ORTHO05D002993 6.5e-10 67.4 90 38.9
CARHR168540 Cardamine hirsuta HOM05D002768 ORTHO05D002993 6.5e-10 67.4 90 38.9
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 6.5e-10 67.4 90 37.8
Solyc06g008520.4 Solanum lycopersicum HOM05D002768 ORTHO05D002993 6.5e-10 67.4 90 40.0
Atru.chr4.2140 Acer truncatum HOM05D002768 ORTHO05D002993 8.5e-10 67.0 89 36.0
PSO135G1068 Papaver somniferum HOM05D002768 ORTHO05D002993 1.1e-09 66.6 90 37.8
PSO384G1628 Papaver somniferum HOM05D002768 ORTHO05D002993 1.1e-09 66.6 90 38.9
Sp7g12540 Schrenkiella parvula HOM05D002768 ORTHO05D002993 1.1e-09 66.6 89 38.2
BcaB02g07545 Brassica carinata HOM05D002768 ORTHO05D002993 1.4e-09 66.2 90 38.9
DCAR_014581 Daucus carota HOM05D002768 ORTHO05D002993 1.4e-09 66.2 90 38.9
Glyma.03G161000 Glycine max HOM05D002768 ORTHO05D002993 1.4e-09 66.2 90 38.9
PSO675G7618 Papaver somniferum HOM05D002768 ORTHO05D002993 1.4e-09 66.2 89 37.1
Sopen06g003290 Solanum pennellii HOM05D002768 ORTHO05D002993 1.4e-09 66.2 90 38.9
PGSC0003DMG400010893 Solanum tuberosum HOM05D002768 ORTHO05D002993 1.4e-09 66.2 90 38.9
PGSC0003DMG400031428 Solanum tuberosum HOM05D002768 ORTHO05D002993 1.4e-09 66.2 90 40.0
THA.LOC104822099 Tarenaya hassleriana HOM05D002768 ORTHO05D002993 1.4e-09 66.2 90 38.9
Carub.0005s2502 Capsella rubella HOM05D002768 ORTHO05D002993 1.9e-09 65.9 90 37.8
PSO541G3332 Papaver somniferum HOM05D002768 ORTHO05D002993 1.9e-09 65.9 89 37.1
Sp5g04550 Schrenkiella parvula HOM05D002768 ORTHO05D002993 1.9e-09 65.9 90 40.0
Aqoxy1G00263 Aquilegia oxysepala HOM05D002768 ORTHO05D002993 2.5e-09 65.5 89 36.0
Aqoxy335s002 Aquilegia oxysepala HOM05D002768 ORTHO05D002993 2.5e-09 65.5 89 36.0
Ca_09696_v3 Cicer arietinum L. HOM05D002768 ORTHO05D002993 2.5e-09 65.5 90 35.6
Duzib052G1024 Durio zibethinus HOM05D002768 ORTHO05D002993 2.5e-09 65.5 89 37.1
Glyma.10G034800 Glycine max HOM05D002768 ORTHO05D002993 2.5e-09 65.5 90 37.8
Glyma.13G121100 Glycine max HOM05D002768 ORTHO05D002993 2.5e-09 65.5 90 37.8
VMungo0720G2804 Vigna mungo HOM05D002768 ORTHO05D002993 2.5e-09 65.5 90 37.8
CAN.G461.7 Capsicum annuum HOM05D002768 ORTHO05D002993 3.2e-09 65.1 90 38.9
Migut.J00939 Erythranthe guttata HOM05D002768 ORTHO05D002993 3.2e-09 65.1 90 37.8
Hma1.2p1_0273F.1_g109980 Hydrangea macrophylla HOM05D002768 ORTHO05D002993 3.2e-09 65.1 89 36.0
Oeu039684.1 Olea europaea HOM05D002768 ORTHO05D002993 3.2e-09 65.1 90 36.7
THA.LOC104802844 Tarenaya hassleriana HOM05D002768 ORTHO05D002993 3.2e-09 65.1 90 38.9
Actinidia02485 Actinidia chinensis HOM05D002768 ORTHO05D002993 4.2e-09 64.7 90 35.6
Aqoxy2G01787 Aquilegia oxysepala HOM05D002768 ORTHO05D002993 4.2e-09 64.7 90 36.7
Cc01_g18540 Coffea canephora HOM05D002768 ORTHO05D002993 4.2e-09 64.7 90 35.6
Peaxi162Scf00134g01212 Petunia axillaris HOM05D002768 ORTHO05D002993 4.2e-09 64.7 89 38.2
Potri.005G221600 Populus trichocarpa HOM05D002768 ORTHO05D002993 4.2e-09 64.7 90 37.8
arahy.Tifrunner.gnm1.ann1.XKA0JW Arachis hypogaea HOM05D002768 ORTHO05D002993 5.5e-09 64.3 90 35.6
CSS0010842 Camellia sinensis var. sinensis HOM05D002768 ORTHO05D002993 5.5e-09 64.3 90 35.6
ECA248G1647 Erigeron canadensis HOM05D002768 ORTHO05D002993 5.5e-09 64.3 90 36.7
Thhalv10026530m.g Eutrema salsugineum HOM05D002768 ORTHO05D002993 5.5e-09 64.3 89 36.0
Lsat_1_v5_gn_5_181681 Lactuca sativa HOM05D002768 ORTHO05D002993 5.5e-09 64.3 83 36.1
HPP92_015824 Vanilla planifolia HOM05D002768 ORTHO05D002993 5.5e-09 64.3 90 37.8
Aa31LG9G2840 Aethionema arabicum HOM05D002768 ORTHO05D002993 7.2e-09 63.9 90 36.7
arahy.Tifrunner.gnm1.ann1.IM1D59 Arachis hypogaea HOM05D002768 ORTHO05D002993 7.2e-09 63.9 89 34.8
Duzib212G0529 Durio zibethinus HOM05D002768 ORTHO05D002993 7.2e-09 63.9 89 34.8
Eucgr.B01517 Eucalyptus grandis HOM05D002768 ORTHO05D002993 7.2e-09 63.9 90 36.7
Nitab4.5_0011666g0010 Nicotiana tabacum HOM05D002768 ORTHO05D002993 7.2e-09 63.9 90 37.8
Potri.002G041500 Populus trichocarpa HOM05D002768 ORTHO05D002993 7.2e-09 63.9 90 36.7
SalBow6G5688 Salvia bowleyana HOM05D002768 ORTHO05D002993 7.2e-09 63.9 90 35.6
Thecc.04G249500 Theobroma cacao HOM05D002768 ORTHO05D002993 7.2e-09 63.9 91 36.3
AT4G14455 Arabidopsis thaliana HOM05D002768 ORTHO05D002993 9.4e-09 63.5 89 34.8
arahy.Tifrunner.gnm1.ann1.JQ3F04 Arachis hypogaea HOM05D002768 ORTHO05D002993 9.4e-09 63.5 86 36.0
arahy.Tifrunner.gnm1.ann1.V2BS34 Arachis hypogaea HOM05D002768 ORTHO05D002993 9.4e-09 63.5 86 36.0
CiPaw.03G261200 Carya illinoinensis HOM05D002768 ORTHO05D002993 9.4e-09 63.5 90 36.7
Nn3g19597 Nelumbo nucifera HOM05D002768 ORTHO05D002993 9.4e-09 63.5 90 36.7
Os08g0563300 Oryza sativa ssp. japonica HOM05D002768 ORTHO05D002993 9.4e-09 63.5 85 34.1
Peaxi162Scf00024g01616 Petunia axillaris HOM05D002768 ORTHO05D002993 9.4e-09 63.5 89 34.8
Phvul.007G195300 Phaseolus vulgaris HOM05D002768 ORTHO05D002993 9.4e-09 63.5 90 36.7
SMO117G0080 Selaginella moellendorffii HOM05D002768 ORTHO05D002993 9.4e-09 63.5 90 36.7
Sc05g0000790 Simmondsia chinensis HOM05D002768 ORTHO05D002993 9.4e-09 63.5 90 36.7
CANSAT01G2421 Cannabis sativa HOM05D002768 ORTHO05D002993 1.2e-08 63.2 90 35.6
Hund09586 Selenicereus undatus HOM05D002768 ORTHO05D002993 1.2e-08 63.2 90 35.6
TPR.G27242 Trifolium pratense HOM05D002768 ORTHO05D002993 1.2e-08 63.2 90 34.4
TAR636G1486 Trochodendron aralioides HOM05D002768 ORTHO05D002993 1.2e-08 63.2 90 35.6
Dinv34595 Davidia involucrata HOM05D002768 ORTHO05D002993 1.6e-08 62.8 90 35.6
Medtr1g070240 Medicago truncatula HOM05D002768 ORTHO05D002993 1.6e-08 62.8 90 34.4
Actinidia31881 Actinidia chinensis HOM05D002768 ORTHO05D002993 2.1e-08 62.4 90 36.7
arahy.Tifrunner.gnm1.ann1.9IC2FY Arachis hypogaea HOM05D002768 ORTHO05D002993 2.1e-08 62.4 90 35.6
Migut.L01551 Erythranthe guttata HOM05D002768 ORTHO05D002993 2.1e-08 62.4 90 37.8
Hma1.2p1_0310F.1_g120760 Hydrangea macrophylla HOM05D002768 ORTHO05D002993 2.1e-08 62.4 85 32.9
Manes.01G199100 Manihot esculenta HOM05D002768 ORTHO05D002993 2.1e-08 62.4 90 35.6
Os02g0820700 Oryza sativa ssp. japonica HOM05D002768 ORTHO05D002993 2.1e-08 62.4 90 36.7
TWI53G0410 Tripterygium wilfordii HOM05D002768 ORTHO05D002993 2.1e-08 62.4 89 37.1
TWI53G0514 Tripterygium wilfordii HOM05D002768 ORTHO05D002993 2.1e-08 62.4 89 37.1
arahy.Tifrunner.gnm1.ann1.VRQ9RQ Arachis hypogaea HOM05D002768 ORTHO05D002993 2.7e-08 62.0 90 35.6
BcaB04g18223 Brassica carinata HOM05D002768 ORTHO05D002993 2.7e-08 62.0 89 34.8
ClCG07G000890 Citrullus lanatus HOM05D002768 ORTHO05D002993 2.7e-08 62.0 90 33.3
Gohir.A11G128900 Gossypium hirsutum HOM05D002768 ORTHO05D002993 2.7e-08 62.0 90 35.6
MBI17_g17501_MAGBIO Magnolia biondii HOM05D002768 ORTHO05D002993 2.7e-08 62.0 90 34.4
MD10G1188000 Malus domestica HOM05D002768 ORTHO05D002993 2.7e-08 62.0 90 37.8
Sed0002197 Sechium edule HOM05D002768 ORTHO05D002993 2.7e-08 62.0 90 34.4
Zm00001eb038830 Zea mays HOM05D002768 ORTHO05D002993 2.7e-08 62.0 85 34.1
Zm00001eb259160 Zea mays HOM05D002768 ORTHO05D002993 2.7e-08 62.0 90 36.7
COL.COLO4_15824 Corchorus olitorius HOM05D002768 ORTHO05D002993 3.6e-08 61.6 89 32.6
Dinv22446 Davidia involucrata HOM05D002768 ORTHO05D002993 3.6e-08 61.6 90 35.6
FvH4_2g22020 Fragaria vesca HOM05D002768 ORTHO05D002993 3.6e-08 61.6 90 36.7
FAN24G3366 Fragaria x ananassa HOM05D002768 ORTHO05D002993 3.6e-08 61.6 90 36.7
Mapoly0002s0103 Marchantia polymorpha HOM05D002768 ORTHO05D002993 3.6e-08 61.6 92 37.0
Solyc09g089630.3 Solanum lycopersicum HOM05D002768 ORTHO05D002993 3.6e-08 61.6 85 34.1
Sopen09g032570 Solanum pennellii HOM05D002768 ORTHO05D002993 3.6e-08 61.6 85 34.1
PGSC0003DMG400017253 Solanum tuberosum HOM05D002768 ORTHO05D002993 3.6e-08 61.6 85 34.1
TAR362G0041 Trochodendron aralioides HOM05D002768 ORTHO05D002993 3.6e-08 61.6 90 36.7
A08p11120 Brassica napus HOM05D002768 ORTHO05D002993 4.7e-08 61.2 90 34.4
Ciclev10006204m.g Citrus clementina HOM05D002768 ORTHO05D002993 4.7e-08 61.2 91 34.1
HanXRQChr12g0386211 Helianthus annuus HOM05D002768 ORTHO05D002993 4.7e-08 61.2 85 32.9
Lsat_1_v5_gn_5_72000 Lactuca sativa HOM05D002768 ORTHO05D002993 4.7e-08 61.2 89 32.6
Lj2A1155T23 Lonicera japonica HOM05D002768 ORTHO05D002993 4.7e-08 61.2 90 35.6
Lalb_Chr21g0306161 Lupinus albus HOM05D002768 ORTHO05D002993 4.7e-08 61.2 90 33.3
RcHm_v2.0_Chr4g0391341 Rosa chinensis HOM05D002768 ORTHO05D002993 4.7e-08 61.2 89 33.7
unitig_8.g4276 Utricularia gibba HOM05D002768 ORTHO05D002993 4.7e-08 61.2 90 37.8
BcaC07g37818 Brassica carinata HOM05D002768 ORTHO05D002993 6.1e-08 60.8 89 33.7
BolC8t48206H Brassica oleracea HOM05D002768 ORTHO05D002993 6.1e-08 60.8 89 33.7
BraA08t33106Z Brassica rapa HOM05D002768 ORTHO05D002993 6.1e-08 60.8 89 33.7
CiPaw.04G184600 Carya illinoinensis HOM05D002768 ORTHO05D002993 6.1e-08 60.8 90 34.4
AUR62011904 Chenopodium quinoa HOM05D002768 ORTHO05D002993 6.1e-08 60.8 90 35.6
AUR62024745 Chenopodium quinoa HOM05D002768 ORTHO05D002993 6.1e-08 60.8 90 35.6
CsaV3_3G022610 Cucumis sativus L. HOM05D002768 ORTHO05D002993 6.1e-08 60.8 90 33.3
Duzib138G0125 Durio zibethinus HOM05D002768 ORTHO05D002993 6.1e-08 60.8 90 34.4
ECA233G0123 Erigeron canadensis HOM05D002768 ORTHO05D002993 6.1e-08 60.8 89 34.8
HanXRQChr12g0378871 Helianthus annuus HOM05D002768 ORTHO05D002993 6.1e-08 60.8 85 31.8
Manes.05G087400 Manihot esculenta HOM05D002768 ORTHO05D002993 6.1e-08 60.8 90 35.6
Prupe.8G227800 Prunus persica HOM05D002768 ORTHO05D002993 6.1e-08 60.8 90 36.7
Cpa.g.sc50.48 Carica papaya HOM05D002768 ORTHO05D002993 7.9e-08 60.5 90 33.3
Gorai.001G251400 Gossypium raimondii HOM05D002768 ORTHO05D002993 7.9e-08 60.5 90 34.4
Lj1g0011004 Lotus japonicus HOM05D002768 ORTHO05D002993 7.9e-08 60.5 90 34.4
MD05G1201200 Malus domestica HOM05D002768 ORTHO05D002993 7.9e-08 60.5 90 36.7
Nitab4.5_0000326g0040 Nicotiana tabacum HOM05D002768 ORTHO05D002993 7.9e-08 60.5 89 36.0
EL10Ac5g10428 Beta vulgaris HOM05D002768 ORTHO05D002993 1.0e-07 60.1 90 34.4
FAN15G0014 Fragaria x ananassa HOM05D002768 ORTHO05D002993 1.0e-07 60.1 90 35.6
FAN20G3068 Fragaria x ananassa HOM05D002768 ORTHO05D002993 1.0e-07 60.1 90 35.6
Gohir.A07G211000 Gossypium hirsutum HOM05D002768 ORTHO05D002993 1.0e-07 60.1 90 33.3
Peaxi162Scf00018g02019 Petunia axillaris HOM05D002768 ORTHO05D002993 1.0e-07 60.1 89 34.8
RcHm_v2.0_Chr6g0288881 Rosa chinensis HOM05D002768 ORTHO05D002993 1.0e-07 60.1 90 35.6
Thecc.01G262700 Theobroma cacao HOM05D002768 ORTHO05D002993 1.0e-07 60.1 90 34.4
CDE02G4256 Ceratophyllum demersum HOM05D002768 ORTHO05D002993 1.4e-07 59.7 90 37.8
Migut.N00252 Erythranthe guttata HOM05D002768 ORTHO05D002993 1.4e-07 59.7 85 32.9
FAN27G1551 Fragaria x ananassa HOM05D002768 ORTHO05D002993 1.4e-07 59.7 90 35.6
Gohir.D11G134700 Gossypium hirsutum HOM05D002768 ORTHO05D002993 1.4e-07 59.7 90 34.4
Nn5g27788 Nelumbo nucifera HOM05D002768 ORTHO05D002993 1.4e-07 59.7 90 34.4
QL06p016605 Quercus lobata HOM05D002768 ORTHO05D002993 1.4e-07 59.7 87 32.2
MD16G1212900 Malus domestica HOM05D002768 ORTHO05D002993 1.8e-07 59.3 89 34.8
Manes.15G038000 Manihot esculenta HOM05D002768 ORTHO05D002993 1.8e-07 59.3 91 34.1
MCO01G105 Micromonas commoda HOM05D002768 ORTHO05D002993 2.3e-07 58.9 87 32.2
GSVIVG01028292001 Vitis vinifera HOM05D002768 ORTHO05D002993 2.3e-07 58.9 90 32.2
Pp3c17_7490 Physcomitrium patens HOM05D002768 ORTHO05D002993 3.0e-07 58.5 85 37.6
TWI12G0491 Tripterygium wilfordii HOM05D002768 ORTHO05D002993 3.0e-07 58.5 90 34.4
CDE05G3616 Ceratophyllum demersum HOM05D002768 ORTHO05D002993 3.9e-07 58.2 90 33.3
Gohir.D07G217000 Gossypium hirsutum HOM05D002768 ORTHO05D002993 3.9e-07 58.2 90 34.4
Potri.010G074100 Populus trichocarpa HOM05D002768 ORTHO05D002993 3.9e-07 58.2 93 33.3
PGR031G3610 Punica granatum HOM05D002768 ORTHO05D002993 3.9e-07 58.2 89 36.0
PGR048G0003 Punica granatum HOM05D002768 ORTHO05D002993 3.9e-07 58.2 89 36.0
Sc25g0004060 Simmondsia chinensis HOM05D002768 ORTHO05D002993 3.9e-07 58.2 90 33.3
CAN.G793.3 Capsicum annuum HOM05D002768 ORTHO05D002993 5.1e-07 57.8 85 31.8
MD13G1210000 Malus domestica HOM05D002768 ORTHO05D002993 5.1e-07 57.8 89 33.7
unitig_899.g15635 Utricularia gibba HOM05D002768 ORTHO05D002993 5.1e-07 57.8 85 31.8
CDE05G3623 Ceratophyllum demersum HOM05D002768 ORTHO05D002993 6.7e-07 57.4 90 37.8
FvH4_4g03051 Fragaria vesca HOM05D002768 ORTHO05D002993 6.7e-07 57.4 89 32.6
MBI18_g20354_MAGBIO Magnolia biondii HOM05D002768 ORTHO05D002993 6.7e-07 57.4 85 30.6
Manes.03G167200 Manihot esculenta HOM05D002768 ORTHO05D002993 6.7e-07 57.4 91 33.0
TWI75G1788 Tripterygium wilfordii HOM05D002768 ORTHO05D002993 6.7e-07 57.4 90 32.2
ATR0763G011 Amborella trichopoda HOM05D002768 ORTHO05D002993 8.8e-07 57.0 90 33.3
ATR0789G106 Amborella trichopoda HOM05D002768 ORTHO05D002993 8.8e-07 57.0 90 33.3
CBR_g39542 Chara braunii HOM05D002768 ORTHO05D002993 1.1e-06 56.6 85 34.1
Hund04544 Selenicereus undatus HOM05D002768 ORTHO05D002993 1.1e-06 56.6 93 34.4
FAN12G0661 Fragaria x ananassa HOM05D002768 ORTHO05D002993 2.6e-06 55.5 87 32.2
Sed0005455 Sechium edule HOM05D002768 ORTHO05D002993 2.6e-06 55.5 87 33.3
GSVIVG01029089001 Vitis vinifera HOM05D002768 ORTHO05D002993 2.6e-06 55.5 90 30.0
PGR031G1335 Punica granatum HOM05D002768 ORTHO05D002993 4.4e-06 54.7 87 28.7
Haze_11332 Corylus avellana HOM05D002768 ORTHO05D002993 7.4e-06 53.9 69 34.8
MELO3C012982.2 Cucumis melo HOM05D002768 ORTHO05D002993 7.4e-06 53.9 89 32.6
CsaV3_3G023820 Cucumis sativus L. HOM05D002768 ORTHO05D002993 9.7e-06 53.5 87 32.2
Nitab4.5_0007234g0030 Nicotiana tabacum HOM05D002768 ORTHO05D002993 9.7e-06 53.5 96 29.2
Pp3c1_32820 Physcomitrium patens HOM05D002768 ORTHO05D002993 9.7e-06 53.5 90 35.6


User provided reference genes

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