Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 0.0e+00 1521.1 1107 100.0
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 2.5e-23 115.5 226 33.6
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 2.1e-22 112.5 222 33.8
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 1.2e-20 106.7 226 33.2
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 2.0e-20 105.9 319 30.7
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 6.4e-19 100.9 235 31.5
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 1.9e-18 99.4 226 32.7
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 2.4e-18 99.0 222 31.5
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 2.4e-18 99.0 219 31.1
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 3.2e-18 98.6 222 31.5
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 4.2e-18 98.2 217 29.5
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 5.5e-18 97.8 225 29.3
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 9.3e-18 97.1 224 32.6
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 9.3e-18 97.1 224 29.9
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 2.1e-17 95.9 171 33.9
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 2.7e-17 95.5 169 34.3
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 3.5e-17 95.1 226 32.3
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 4.6e-17 94.7 224 32.1
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 1.0e-16 93.6 232 30.6
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 1.3e-16 93.2 115 40.9
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 1.3e-16 93.2 224 31.7
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 1.8e-16 92.8 224 31.2
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 1.8e-16 92.8 219 28.8
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 2.3e-16 92.4 226 31.0
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 2.3e-16 92.4 224 31.7
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 2.3e-16 92.4 226 30.5
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 2.3e-16 92.4 228 31.1
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 2.3e-16 92.4 224 29.0
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 3.0e-16 92.0 218 31.2
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 3.0e-16 92.0 224 29.9
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 3.0e-16 92.0 224 29.9
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 3.9e-16 91.7 224 29.0
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 3.9e-16 91.7 224 28.1
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 3.9e-16 91.7 224 28.1
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 5.1e-16 91.3 224 27.2
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 5.1e-16 91.3 234 29.1
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 6.7e-16 90.9 232 30.2
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 6.7e-16 90.9 248 29.8
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 6.7e-16 90.9 217 31.3
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 6.7e-16 90.9 217 31.3
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 6.7e-16 90.9 226 28.3
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 6.7e-16 90.9 218 30.7
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 8.7e-16 90.5 224 30.4
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 8.7e-16 90.5 289 28.7
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 1.1e-15 90.1 221 30.3
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 1.1e-15 90.1 224 28.6
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 1.5e-15 89.7 289 28.7
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 1.5e-15 89.7 218 28.4
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 1.5e-15 89.7 240 27.9
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 1.9e-15 89.4 224 29.0
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 2.5e-15 89.0 219 28.3
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 3.3e-15 88.6 224 31.2
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 3.3e-15 88.6 218 29.8
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 5.6e-15 87.8 226 29.2
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 7.4e-15 87.4 159 32.1
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 9.6e-15 87.0 163 32.5
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 9.6e-15 87.0 208 31.2
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 1.3e-14 86.7 224 28.1
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 1.3e-14 86.7 219 29.2
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 1.6e-14 86.3 219 30.1
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 1.6e-14 86.3 208 31.2
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 2.1e-14 85.9 216 30.1
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 2.8e-14 85.5 226 27.9
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 2.8e-14 85.5 214 28.5
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 3.7e-14 85.1 227 29.1
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 3.7e-14 85.1 216 28.7
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 3.7e-14 85.1 224 28.6
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 4.8e-14 84.7 224 25.9
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 4.8e-14 84.7 224 28.6
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 6.2e-14 84.3 224 29.5
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 6.2e-14 84.3 219 28.8
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 8.2e-14 84.0 231 28.1
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 8.2e-14 84.0 115 38.3
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 8.2e-14 84.0 215 28.8
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 1.4e-13 83.2 226 27.9
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 1.4e-13 83.2 219 28.8
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 1.8e-13 82.8 226 27.0
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 2.4e-13 82.4 218 28.4
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 2.4e-13 82.4 179 31.8
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 2.4e-13 82.4 226 27.4
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 5.3e-13 81.3 220 27.7
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 6.9e-13 80.9 225 28.4
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 6.9e-13 80.9 224 29.0
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 6.9e-13 80.9 183 30.1
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 9.0e-13 80.5 115 37.4
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 1.2e-12 80.1 224 29.9
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 1.5e-12 79.7 219 28.8
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 2.0e-12 79.3 219 27.9
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 2.6e-12 79.0 224 27.7
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 4.5e-12 78.2 285 30.5
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 4.5e-12 78.2 224 29.0
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 4.5e-12 78.2 216 27.8
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 5.8e-12 77.8 224 29.0
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 1.3e-11 76.6 217 26.3
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 2.9e-11 75.5 112 35.7
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 3.8e-11 75.1 258 27.5
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 6.5e-11 74.3 216 26.9
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 6.5e-11 74.3 112 33.9
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 8.4e-11 73.9 186 29.0
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 8.4e-11 73.9 186 29.0
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 1.4e-10 73.2 216 26.4
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 1.4e-10 73.2 216 29.2
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.4e-10 73.2 224 28.6
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 2.5e-10 72.4 115 29.6
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 9.3e-10 70.5 226 25.2
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 2.7e-09 68.9 168 29.2
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 2.3e-08 65.9 165 29.7
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 5.1e-08 64.7 160 28.1
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 2.5e-07 62.4 224 25.0
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 4.3e-07 61.6 224 24.6


User provided reference genes

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