Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g184151 Chlamydomonas reinhardtii HOM05D007219 ORTHO05D008995 1.5e-59 232.6 117 100.0
Migut.M00020 Erythranthe guttata HOM05D007219 ORTHO05D008995 4.3e-14 81.6 108 45.4
PRCOL_00004041 Prasinoderma coloniale HOM05D007219 ORTHO05D008995 1.2e-13 80.1 94 46.8
Prupe.3G202800 Prunus persica HOM05D007219 ORTHO05D008995 1.2e-13 80.1 100 49.0
MSTRG.14930 Avicennia marina HOM05D007219 ORTHO05D008995 2.8e-13 79.0 99 44.4
CANSAT64G0298 Cannabis sativa HOM05D007219 ORTHO05D008995 6.2e-13 77.8 99 43.4
Potri.014G161800 Populus trichocarpa HOM05D007219 ORTHO05D008995 6.2e-13 77.8 94 47.9
Mapoly0089s0028 Marchantia polymorpha HOM05D007219 ORTHO05D008995 8.1e-13 77.4 90 45.6
CBR_g31837 Chara braunii HOM05D007219 ORTHO05D008995 1.4e-12 76.6 86 53.5
Thhalv10002661m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 1.8e-12 76.3 110 40.0
GSVIVG01030037001 Vitis vinifera HOM05D007219 ORTHO05D008995 1.8e-12 76.3 99 47.5
Cpa.g.sc395.3 Carica papaya HOM05D007219 ORTHO05D008995 2.3e-12 75.9 113 44.2
Atru.chr6.3346 Acer truncatum HOM05D007219 ORTHO05D008995 3.1e-12 75.5 98 43.9
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 3.1e-12 75.5 110 40.0
CDE10G1006 Ceratophyllum demersum HOM05D007219 ORTHO05D008995 3.1e-12 75.5 104 43.3
Medtr3g083200 Medicago truncatula HOM05D007219 ORTHO05D008995 4.0e-12 75.1 99 42.4
QL08p028873 Quercus lobata HOM05D007219 ORTHO05D008995 5.2e-12 74.7 112 42.9
RcHm_v2.0_Chr2g0156861 Rosa chinensis HOM05D007219 ORTHO05D008995 5.2e-12 74.7 100 45.0
SalBow7G0564 Salvia bowleyana HOM05D007219 ORTHO05D008995 5.2e-12 74.7 108 43.5
Thecc.01G189100 Theobroma cacao HOM05D007219 ORTHO05D008995 5.2e-12 74.7 96 46.9
Aqoxy1G04023 Aquilegia oxysepala HOM05D007219 ORTHO05D008995 6.8e-12 74.3 100 43.0
Carub.0003s2645 Capsella rubella HOM05D007219 ORTHO05D008995 6.8e-12 74.3 110 39.1
Cc07_g19250 Coffea canephora HOM05D007219 ORTHO05D008995 6.8e-12 74.3 108 43.5
Duzib138G0301 Durio zibethinus HOM05D007219 ORTHO05D008995 6.8e-12 74.3 95 46.3
Eucgr.K00659 Eucalyptus grandis HOM05D007219 ORTHO05D008995 6.8e-12 74.3 100 44.0
FvH4_6g41300 Fragaria vesca HOM05D007219 ORTHO05D008995 6.8e-12 74.3 100 46.0
FAN14G1895 Fragaria x ananassa HOM05D007219 ORTHO05D008995 6.8e-12 74.3 100 46.0
MD09G1120700 Malus domestica HOM05D007219 ORTHO05D008995 6.8e-12 74.3 99 46.5
Sp3g23430 Schrenkiella parvula HOM05D007219 ORTHO05D008995 6.8e-12 74.3 110 39.1
THA.LOC104826618 Tarenaya hassleriana HOM05D007219 ORTHO05D008995 6.8e-12 74.3 98 44.9
Hma1.2p1_0133F.1_g061230 Hydrangea macrophylla HOM05D007219 ORTHO05D008995 8.9e-12 73.9 99 45.5
AL3G42440 Arabidopsis lyrata HOM05D007219 ORTHO05D008995 1.2e-11 73.6 110 39.1
TPR.G19322 Trifolium pratense HOM05D007219 ORTHO05D008995 1.2e-11 73.6 94 43.6
BolC3t17801H Brassica oleracea HOM05D007219 ORTHO05D008995 1.5e-11 73.2 110 38.2
AT2G04845 Arabidopsis thaliana HOM05D007219 ORTHO05D008995 2.6e-11 72.4 110 39.1
CARHR102840 Cardamine hirsuta HOM05D007219 ORTHO05D008995 2.6e-11 72.4 110 38.2
CsaV3_7G002720 Cucumis sativus L. HOM05D007219 ORTHO05D008995 2.6e-11 72.4 100 44.0
CSS0025035 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 3.4e-11 72.0 99 44.4
ClCG02G002620 Citrullus lanatus HOM05D007219 ORTHO05D008995 3.4e-11 72.0 100 43.0
Sed0018447 Sechium edule HOM05D007219 ORTHO05D008995 3.4e-11 72.0 91 48.4
vmacro12114 Vaccinium macrocarpon HOM05D007219 ORTHO05D008995 3.4e-11 72.0 95 46.3
PSO302G0207 Papaver somniferum HOM05D007219 ORTHO05D008995 4.4e-11 71.6 95 45.3
Oeu029809.1 Olea europaea HOM05D007219 ORTHO05D008995 5.8e-11 71.2 108 40.7
Hund24148 Selenicereus undatus HOM05D007219 ORTHO05D008995 5.8e-11 71.2 115 40.0
Ah.14g082820 Amaranthus hybridus HOM05D007219 ORTHO05D008995 7.5e-11 70.9 99 42.4
Manes.12G083700 Manihot esculenta HOM05D007219 ORTHO05D008995 7.5e-11 70.9 95 45.3
EL10Ac9g22747 Beta vulgaris HOM05D007219 ORTHO05D008995 9.9e-11 70.5 98 43.9
MCO15G116 Micromonas commoda HOM05D007219 ORTHO05D008995 9.9e-11 70.5 91 50.5
Actinidia07878 Actinidia chinensis HOM05D007219 ORTHO05D008995 1.3e-10 70.1 99 42.4
Dinv05845 Davidia involucrata HOM05D007219 ORTHO05D008995 1.3e-10 70.1 94 42.6
Nn1g03266 Nelumbo nucifera HOM05D007219 ORTHO05D008995 1.3e-10 70.1 99 43.4
Psat5g102680 Pisum sativum HOM05D007219 ORTHO05D008995 1.3e-10 70.1 99 42.4
TWI36G0002 Tripterygium wilfordii HOM05D007219 ORTHO05D008995 1.3e-10 70.1 95 45.3
Gohir.A07G167500 Gossypium hirsutum HOM05D007219 ORTHO05D008995 1.7e-10 69.7 108 42.6
Gorai.001G193200 Gossypium raimondii HOM05D007219 ORTHO05D008995 1.7e-10 69.7 108 41.7
Ca_16365_v3 Cicer arietinum L. HOM05D007219 ORTHO05D008995 2.2e-10 69.3 89 44.9
Lj6g0005071 Lotus japonicus HOM05D007219 ORTHO05D008995 2.2e-10 69.3 94 42.6
Lalb_Chr22g0360881 Lupinus albus HOM05D007219 ORTHO05D008995 2.2e-10 69.3 113 39.8
CAN.G716.12 Capsicum annuum HOM05D007219 ORTHO05D008995 2.9e-10 68.9 95 42.1
Nitab4.5_0002877g0050 Nicotiana tabacum HOM05D007219 ORTHO05D008995 2.9e-10 68.9 96 41.7
FAN05G4854 Fragaria x ananassa HOM05D007219 ORTHO05D008995 3.7e-10 68.6 106 43.4
Os03g0194400 Oryza sativa ssp. japonica HOM05D007219 ORTHO05D008995 3.7e-10 68.6 120 37.5
Peaxi162Scf00147g01822 Petunia axillaris HOM05D007219 ORTHO05D008995 3.7e-10 68.6 95 43.2
AUR62015074 Chenopodium quinoa HOM05D007219 ORTHO05D008995 4.9e-10 68.2 98 41.8
Gohir.D07G173000 Gossypium hirsutum HOM05D007219 ORTHO05D008995 4.9e-10 68.2 108 40.7
PGR142G0267 Punica granatum HOM05D007219 ORTHO05D008995 4.9e-10 68.2 116 39.7
TAR626G0546 Trochodendron aralioides HOM05D007219 ORTHO05D008995 4.9e-10 68.2 99 41.4
Haze_12702 Corylus avellana HOM05D007219 ORTHO05D008995 8.3e-10 67.4 90 45.6
Nitab4.5_0011106g0020 Nicotiana tabacum HOM05D007219 ORTHO05D008995 8.3e-10 67.4 96 41.7
Glyma.13G025700 Glycine max HOM05D007219 ORTHO05D008995 1.4e-09 66.6 95 43.2
SMO115G0308 Selaginella moellendorffii HOM05D007219 ORTHO05D008995 1.4e-09 66.6 90 44.4
ATR0712G058 Amborella trichopoda HOM05D007219 ORTHO05D008995 2.4e-09 65.9 98 39.8
PGSC0003DMG400020758 Solanum tuberosum HOM05D007219 ORTHO05D008995 4.1e-09 65.1 91 41.8
Phvul.006G013300 Phaseolus vulgaris HOM05D007219 ORTHO05D008995 5.4e-09 64.7 115 37.4
arahy.Tifrunner.gnm1.ann1.N6EW4G Arachis hypogaea HOM05D007219 ORTHO05D008995 9.2e-09 63.9 90 43.3
Sopen05g025870 Solanum pennellii HOM05D007219 ORTHO05D008995 9.2e-09 63.9 95 40.0
Ciclev10016673m.g Citrus clementina HOM05D007219 ORTHO05D008995 2.7e-08 62.4 77 48.1
HanXRQChr12g0373931 Helianthus annuus HOM05D007219 ORTHO05D008995 3.5e-08 62.0 94 39.4
Zm00001eb401150 Zea mays HOM05D007219 ORTHO05D008995 3.5e-08 62.0 76 47.4
Duzib133G0547 Durio zibethinus HOM05D007219 ORTHO05D008995 4.6e-08 61.6 77 48.1
HPP92_020392 Vanilla planifolia HOM05D007219 ORTHO05D008995 4.6e-08 61.6 98 37.8
MBI16_g42309_MAGBIO Magnolia biondii HOM05D007219 ORTHO05D008995 6.0e-08 61.2 77 45.5
DCAR_019229 Daucus carota HOM05D007219 ORTHO05D008995 7.8e-08 60.8 98 38.8
COL.COLO4_04268 Corchorus olitorius HOM05D007219 ORTHO05D008995 1.0e-07 60.5 70 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1409 Anthoceros agrestis HOM05D007219 ORTHO05D008995 3.9e-07 58.5 145 29.0
Dinv07849 Davidia involucrata HOM05D007219 ORTHO05D008995 3.9e-07 58.5 79 45.6
Lsat_1_v5_gn_5_121560 Lactuca sativa HOM05D007219 ORTHO05D008995 5.1e-07 58.2 94 38.3
QL08p028923 Quercus lobata HOM05D007219 ORTHO05D008995 3.3e-06 55.5 81 43.2
Sabra14G0123400 Salix brachista HOM05D007219 ORTHO05D008995 7.3e-06 54.3 126 34.9
CiPaw.03G278000 Carya illinoinensis HOM05D007219 ORTHO05D008995 9.5e-06 53.9 77 45.5
ECA234G4660 Erigeron canadensis HOM05D007219 ORTHO05D008995 9.5e-06 53.9 94 36.2


User provided reference genes

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