Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 2.1e-144 516.2 357 100.0
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.9e-28 131.0 163 44.2
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 1.9e-28 131.0 165 44.2
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 2.4e-28 130.6 163 42.9
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 4.2e-28 129.8 168 44.0
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.2e-27 128.3 163 42.9
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 1.2e-27 128.3 163 42.9
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 1.2e-27 128.3 163 42.9
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.2e-27 128.3 163 42.9
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 1.2e-27 128.3 163 42.9
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 2.7e-27 127.1 163 42.3
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 3.5e-27 126.7 160 45.6
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 4.6e-27 126.3 169 42.6
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 4.6e-27 126.3 169 42.6
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 6.0e-27 125.9 169 42.6
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.3e-26 124.8 160 43.8
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.3e-26 124.8 160 43.8
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.3e-26 124.8 163 44.8
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.3e-26 124.8 160 44.4
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.8e-26 124.4 163 42.3
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.8e-26 124.4 163 44.8
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.8e-26 124.4 163 44.8
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 3.0e-26 123.6 160 44.4
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 3.9e-26 123.2 163 42.9
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 3.9e-26 123.2 163 43.6
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 5.1e-26 122.9 172 41.9
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 5.1e-26 122.9 163 42.3
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 5.1e-26 122.9 163 42.9
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 5.1e-26 122.9 160 44.4
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 5.1e-26 122.9 163 42.9
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 6.7e-26 122.5 163 42.3
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 6.7e-26 122.5 168 42.9
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 8.7e-26 122.1 163 42.3
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 1.1e-25 121.7 160 43.1
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 1.1e-25 121.7 163 42.3
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.1e-25 121.7 163 42.3
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 1.1e-25 121.7 163 43.6
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 1.5e-25 121.3 163 42.3
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.5e-25 121.3 163 42.9
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.9e-25 120.9 160 43.8
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 1.9e-25 120.9 163 39.9
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 2.5e-25 120.6 165 43.6
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.5e-25 120.6 165 43.6
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.5e-25 120.6 165 41.8
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 2.5e-25 120.6 163 42.3
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 2.5e-25 120.6 163 42.3
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 3.3e-25 120.2 172 42.4
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 3.3e-25 120.2 160 43.1
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 3.3e-25 120.2 163 43.6
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 4.3e-25 119.8 190 36.3
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 4.3e-25 119.8 169 42.0
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 4.3e-25 119.8 169 40.8
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 4.3e-25 119.8 163 41.7
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 5.6e-25 119.4 163 42.3
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 5.6e-25 119.4 169 43.2
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 7.4e-25 119.0 163 41.1
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 7.4e-25 119.0 163 42.9
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 9.6e-25 118.6 163 42.9
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 1.3e-24 118.2 163 42.3
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.3e-24 118.2 160 42.5
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.3e-24 118.2 165 43.0
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.3e-24 118.2 165 41.8
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.6e-24 117.9 160 42.5
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 2.1e-24 117.5 163 42.3
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 2.1e-24 117.5 165 43.0
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 2.1e-24 117.5 163 39.9
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 2.8e-24 117.1 165 43.0
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 3.7e-24 116.7 163 41.7
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 3.7e-24 116.7 168 41.7
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 3.7e-24 116.7 163 41.7
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 3.7e-24 116.7 163 41.7
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 3.7e-24 116.7 168 41.1
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 4.8e-24 116.3 167 43.1
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 6.2e-24 115.9 165 40.6
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 1.8e-23 114.4 163 41.7
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 3.1e-23 113.6 168 39.9
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 4.0e-23 113.2 163 39.3
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 4.0e-23 113.2 168 39.9
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 5.3e-23 112.8 163 39.3
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 1.5e-22 111.3 151 41.7
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 5.8e-22 109.4 190 36.8
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 1.0e-21 108.6 165 39.4
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 4.9e-21 106.3 161 42.2
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 6.5e-21 105.9 159 40.9
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.1e-20 105.1 163 38.7
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.4e-20 104.8 146 41.8
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 1.9e-20 104.4 151 40.4
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 1.9e-20 104.4 166 38.0
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 3.2e-20 103.6 151 41.1
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 4.2e-20 103.2 152 42.8
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.6e-19 101.3 196 35.2
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 3.5e-19 100.1 146 40.4
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 4.6e-19 99.8 146 41.1
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 1.8e-18 97.8 211 33.2
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 5.1e-18 96.3 102 47.1
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 9.7e-17 92.0 163 36.8
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 1.6e-16 91.3 165 34.5
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 8.2e-16 89.0 146 38.4
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 1.4e-12 78.2 183 31.1
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 3.2e-12 77.0 76 47.4
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 7.2e-12 75.9 121 42.1
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.0e-10 72.0 62 50.0
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 2.3e-10 70.9 59 52.5
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 8.8e-10 68.9 56 51.8
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.5e-09 68.2 91 41.8
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 5.9e-06 56.2 106 35.8


User provided reference genes

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