Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g164550 Chlamydomonas reinhardtii HOM05D006928 ORTHO05D008618 7.3e-38 160.2 90 100.0
THA.LOC104799431 Tarenaya hassleriana HOM05D006928 ORTHO05D008618 2.0e-19 99.0 79 65.8
THA.LOC104818466 Tarenaya hassleriana HOM05D006928 ORTHO05D008618 2.6e-19 98.6 79 64.6
Ciclev10026852m.g Citrus clementina HOM05D006928 ORTHO05D008618 9.9e-19 96.7 79 63.3
Sp6g33580 Schrenkiella parvula HOM05D006928 ORTHO05D008618 9.9e-19 96.7 79 64.6
Aa31LG1G17250 Aethionema arabicum HOM05D006928 ORTHO05D008618 1.7e-18 95.9 87 62.1
AT5G09830 Arabidopsis thaliana HOM05D006928 ORTHO05D008618 1.7e-18 95.9 77 66.2
AL8G42110 Arabidopsis lyrata HOM05D006928 ORTHO05D008618 2.9e-18 95.1 79 62.0
MD15G1343100 Malus domestica HOM05D006928 ORTHO05D008618 2.9e-18 95.1 79 62.0
Nn1g06098 Nelumbo nucifera HOM05D006928 ORTHO05D008618 2.9e-18 95.1 79 58.2
Thhalv10005190m.g Eutrema salsugineum HOM05D006928 ORTHO05D008618 3.8e-18 94.7 79 62.0
Thhalv10015138m.g Eutrema salsugineum HOM05D006928 ORTHO05D008618 3.8e-18 94.7 79 63.3
AL6G20240 Arabidopsis lyrata HOM05D006928 ORTHO05D008618 4.9e-18 94.4 77 63.6
EL10Ac6g15253 Beta vulgaris HOM05D006928 ORTHO05D008618 4.9e-18 94.4 79 60.8
BcaB04g19985 Brassica carinata HOM05D006928 ORTHO05D008618 4.9e-18 94.4 77 63.6
Thecc.01G120800 Theobroma cacao HOM05D006928 ORTHO05D008618 4.9e-18 94.4 79 60.8
BolC9t53907H Brassica oleracea HOM05D006928 ORTHO05D008618 6.4e-18 94.0 79 62.0
COL.COLO4_22417 Corchorus olitorius HOM05D006928 ORTHO05D008618 6.4e-18 94.0 79 60.8
TAR381G0700 Trochodendron aralioides HOM05D006928 ORTHO05D008618 6.4e-18 94.0 79 60.8
AagrBONN_evm.TU.Sc2ySwM_344.3776 Anthoceros agrestis HOM05D006928 ORTHO05D008618 8.4e-18 93.6 79 59.5
BcaB08g37169 Brassica carinata HOM05D006928 ORTHO05D008618 8.4e-18 93.6 77 66.2
A10p27630 Brassica napus HOM05D006928 ORTHO05D008618 8.4e-18 93.6 77 66.2
C09p67690 Brassica napus HOM05D006928 ORTHO05D008618 8.4e-18 93.6 77 66.2
BolC9t59531H Brassica oleracea HOM05D006928 ORTHO05D008618 8.4e-18 93.6 77 66.2
BraA10t44815Z Brassica rapa HOM05D006928 ORTHO05D008618 8.4e-18 93.6 77 66.2
FAN23G1796 Fragaria x ananassa HOM05D006928 ORTHO05D008618 8.4e-18 93.6 79 62.0
FAN28G2803 Fragaria x ananassa HOM05D006928 ORTHO05D008618 8.4e-18 93.6 79 62.0
Gohir.A02G138100 Gossypium hirsutum HOM05D006928 ORTHO05D008618 8.4e-18 93.6 79 60.8
Gohir.D03G048800 Gossypium hirsutum HOM05D006928 ORTHO05D008618 8.4e-18 93.6 79 60.8
Gorai.003G050100 Gossypium raimondii HOM05D006928 ORTHO05D008618 8.4e-18 93.6 79 60.8
RcHm_v2.0_Chr2g0119151 Rosa chinensis HOM05D006928 ORTHO05D008618 8.4e-18 93.6 79 62.0
Sabra16G0195000 Salix brachista HOM05D006928 ORTHO05D008618 8.4e-18 93.6 79 62.0
Sp2g27750 Schrenkiella parvula HOM05D006928 ORTHO05D008618 8.4e-18 93.6 79 60.8
Eucgr.I00245 Eucalyptus grandis HOM05D006928 ORTHO05D008618 1.1e-17 93.2 79 63.3
BraA09t36529Z Brassica rapa HOM05D006928 ORTHO05D008618 1.4e-17 92.8 79 60.8
Dinv09934 Davidia involucrata HOM05D006928 ORTHO05D008618 1.4e-17 92.8 79 59.5
HPP92_027450 Vanilla planifolia HOM05D006928 ORTHO05D008618 1.4e-17 92.8 79 58.2
Carub.0006s0825 Capsella rubella HOM05D006928 ORTHO05D008618 1.9e-17 92.4 77 62.3
FvH4_1g23590 Fragaria vesca HOM05D006928 ORTHO05D008618 1.9e-17 92.4 79 60.8
FAN19G2906 Fragaria x ananassa HOM05D006928 ORTHO05D008618 1.9e-17 92.4 79 60.8
MBI09_g18622_MAGBIO Magnolia biondii HOM05D006928 ORTHO05D008618 1.9e-17 92.4 79 58.2
MBI09_g20115_MAGBIO Magnolia biondii HOM05D006928 ORTHO05D008618 1.9e-17 92.4 79 58.2
Atru.chr4.541 Acer truncatum HOM05D006928 ORTHO05D008618 2.4e-17 92.0 79 60.8
CANSAT01G1375 Cannabis sativa HOM05D006928 ORTHO05D008618 2.4e-17 92.0 79 63.3
AUR62003624 Chenopodium quinoa HOM05D006928 ORTHO05D008618 2.4e-17 92.0 79 60.8
Manes.12G150300 Manihot esculenta HOM05D006928 ORTHO05D008618 3.2e-17 91.7 79 59.5
Prupe.6G162900 Prunus persica HOM05D006928 ORTHO05D008618 3.2e-17 91.7 79 60.8
Duzib264G0933 Durio zibethinus HOM05D006928 ORTHO05D008618 4.2e-17 91.3 79 58.2
Lalb_Chr12g0203321 Lupinus albus HOM05D006928 ORTHO05D008618 4.2e-17 91.3 79 60.8
Zm00001eb146740 Zea mays HOM05D006928 ORTHO05D008618 4.2e-17 91.3 86 57.0
Hund03424 Selenicereus undatus HOM05D006928 ORTHO05D008618 5.4e-17 90.9 79 58.2
Aqoxy3G02632 Aquilegia oxysepala HOM05D006928 ORTHO05D008618 7.1e-17 90.5 79 58.2
ClCG02G000690 Citrullus lanatus HOM05D006928 ORTHO05D008618 7.1e-17 90.5 79 62.0
Duzib187G1761 Durio zibethinus HOM05D006928 ORTHO05D008618 7.1e-17 90.5 79 59.5
CSS0007569 Camellia sinensis var. sinensis HOM05D006928 ORTHO05D008618 9.2e-17 90.1 79 59.5
CSS0018620 Camellia sinensis var. sinensis HOM05D006928 ORTHO05D008618 9.2e-17 90.1 79 59.5
CARHR278670 Cardamine hirsuta HOM05D006928 ORTHO05D008618 9.2e-17 90.1 79 59.5
Lj4g0006915 Lotus japonicus HOM05D006928 ORTHO05D008618 9.2e-17 90.1 79 58.2
PSO541G1601 Papaver somniferum HOM05D006928 ORTHO05D008618 9.2e-17 90.1 79 62.0
Potri.001G309200 Populus trichocarpa HOM05D006928 ORTHO05D008618 9.2e-17 90.1 79 62.0
PGR119G2472 Punica granatum HOM05D006928 ORTHO05D008618 9.2e-17 90.1 79 57.0
Sed0020530 Sechium edule HOM05D006928 ORTHO05D008618 9.2e-17 90.1 79 60.8
GSVIVG01026587001 Vitis vinifera HOM05D006928 ORTHO05D008618 9.2e-17 90.1 79 57.0
Nitab4.5_0010284g0020 Nicotiana tabacum HOM05D006928 ORTHO05D008618 1.2e-16 89.7 79 58.2
Sc16g0003960 Simmondsia chinensis HOM05D006928 ORTHO05D008618 1.6e-16 89.4 79 58.2
TPR.G2179 Trifolium pratense HOM05D006928 ORTHO05D008618 1.6e-16 89.4 79 59.5
TWI75G0630 Tripterygium wilfordii HOM05D006928 ORTHO05D008618 1.6e-16 89.4 79 60.8
CsaV3_2G018080 Cucumis sativus L. HOM05D006928 ORTHO05D008618 2.1e-16 89.0 79 60.8
Glyma.08G146400 Glycine max HOM05D006928 ORTHO05D008618 2.1e-16 89.0 79 59.5
Carub.0008s2549 Capsella rubella HOM05D006928 ORTHO05D008618 3.5e-16 88.2 79 59.5
ECA238G4197 Erigeron canadensis HOM05D006928 ORTHO05D008618 3.5e-16 88.2 77 59.7
Pp3c4_15580 Physcomitrium patens HOM05D006928 ORTHO05D008618 3.5e-16 88.2 79 59.5
Psat7g048720 Pisum sativum HOM05D006928 ORTHO05D008618 3.5e-16 88.2 79 57.0
Actinidia17615 Actinidia chinensis HOM05D006928 ORTHO05D008618 4.6e-16 87.8 89 56.2
PSO675G6866 Papaver somniferum HOM05D006928 ORTHO05D008618 4.6e-16 87.8 79 60.8
CDE12G0365 Ceratophyllum demersum HOM05D006928 ORTHO05D008618 6.0e-16 87.4 79 54.4
HanXRQChr15g0471661 Helianthus annuus HOM05D006928 ORTHO05D008618 6.0e-16 87.4 79 58.2
Glyma.05G188300 Glycine max HOM05D006928 ORTHO05D008618 7.8e-16 87.0 79 59.5
Peaxi162Scf00025g02217 Petunia axillaris HOM05D006928 ORTHO05D008618 7.8e-16 87.0 79 57.0
Cfa002868 Carpinus fangiana HOM05D006928 ORTHO05D008618 1.0e-15 86.7 89 53.9
DCAR_027258 Daucus carota HOM05D006928 ORTHO05D008618 1.0e-15 86.7 79 59.5
Lsat_1_v5_gn_2_66720 Lactuca sativa HOM05D006928 ORTHO05D008618 1.0e-15 86.7 79 57.0
Nitab4.5_0002064g0030 Nicotiana tabacum HOM05D006928 ORTHO05D008618 1.0e-15 86.7 79 57.0
MSTRG.2691 Avicennia marina HOM05D006928 ORTHO05D008618 1.3e-15 86.3 78 56.4
TAR376G0498 Trochodendron aralioides HOM05D006928 ORTHO05D008618 1.3e-15 86.3 61 70.5
Cc00_g00790 Coffea canephora HOM05D006928 ORTHO05D008618 2.3e-15 85.5 79 58.2
Cc07_g17360 Coffea canephora HOM05D006928 ORTHO05D008618 2.3e-15 85.5 79 58.2
Phvul.002G269100 Phaseolus vulgaris HOM05D006928 ORTHO05D008618 2.3e-15 85.5 79 57.0
BcaC04g23298 Brassica carinata HOM05D006928 ORTHO05D008618 3.0e-15 85.1 88 54.5
CiPaw.04G083900 Carya illinoinensis HOM05D006928 ORTHO05D008618 3.0e-15 85.1 89 52.8
CARHR203570 Cardamine hirsuta HOM05D006928 ORTHO05D008618 3.9e-15 84.7 58 74.1
SMO351G0462 Selaginella moellendorffii HOM05D006928 ORTHO05D008618 1.1e-14 83.2 79 54.4
Actinidia26282 Actinidia chinensis HOM05D006928 ORTHO05D008618 1.9e-14 82.4 68 60.3
Migut.H01113 Erythranthe guttata HOM05D006928 ORTHO05D008618 2.5e-14 82.0 86 54.7
Ah.03g146570 Amaranthus hybridus HOM05D006928 ORTHO05D008618 3.3e-14 81.6 65 63.1
Mapoly0023s0156 Marchantia polymorpha HOM05D006928 ORTHO05D008618 5.6e-14 80.9 79 51.9
Solyc11g005360.2 Solanum lycopersicum HOM05D006928 ORTHO05D008618 9.6e-14 80.1 74 55.4
Sopen11g001370 Solanum pennellii HOM05D006928 ORTHO05D008618 9.6e-14 80.1 74 55.4
Cpa.g.sc1003.1 Carica papaya HOM05D006928 ORTHO05D008618 1.2e-13 79.7 58 67.2
AUR62017933 Chenopodium quinoa HOM05D006928 ORTHO05D008618 1.2e-13 79.7 70 61.4
Haze_25197 Corylus avellana HOM05D006928 ORTHO05D008618 2.1e-13 79.0 72 61.1
QL06p051863 Quercus lobata HOM05D006928 ORTHO05D008618 2.1e-13 79.0 69 62.3
CDE04G1901 Ceratophyllum demersum HOM05D006928 ORTHO05D008618 2.8e-13 78.6 84 51.2
Haze_25192 Corylus avellana HOM05D006928 ORTHO05D008618 4.7e-13 77.8 69 62.3
Haze_25196 Corylus avellana HOM05D006928 ORTHO05D008618 4.7e-13 77.8 68 63.2
Medtr8g092690 Medicago truncatula HOM05D006928 ORTHO05D008618 4.7e-13 77.8 58 67.2
Os01g0866600 Oryza sativa ssp. japonica HOM05D006928 ORTHO05D008618 4.7e-13 77.8 66 62.1
SalBow1G8150 Salvia bowleyana HOM05D006928 ORTHO05D008618 6.2e-13 77.4 59 62.7
Rhsim08G0003500 Rhododendron simsii HOM05D002612 ORTHO05D008618 1.1e-12 76.6 63 61.9
unitig_0.g37 Utricularia gibba HOM05D006928 ORTHO05D008618 5.3e-12 74.3 57 64.9
SGA_v2.0_scaffold137G35109 Striga asiatica HOM05D006928 ORTHO05D008618 1.5e-11 72.8 69 58.0
C09p09990 Brassica napus HOM05D006928 ORTHO05D008618 3.4e-11 71.6 82 52.4
CAN.G249.11 Capsicum annuum HOM05D006928 ORTHO05D008618 5.8e-11 70.9 58 62.1
CBR_g19927 Chara braunii HOM05D006928 ORTHO05D008618 1.3e-10 69.7 79 48.1
BcaB08g37178 Brassica carinata HOM05D006928 ORTHO05D008618 1.9e-09 65.9 77 51.9
SEGI_33222 Sequoiadendron giganteum HOM05D006928 ORTHO05D008618 8.7e-07 57.0 50 60.0
PGR044G0659 Punica granatum HOM05D002854 ORTHO05D003051 1.9e-06 55.8 91 46.2
Eucgr.K02311 Eucalyptus grandis HOM05D002854 ORTHO05D003051 2.5e-06 55.5 90 42.2
MBI06_g27499_MAGBIO Magnolia biondii HOM05D002854 ORTHO05D003051 5.6e-06 54.3 88 46.6
Phvul.004G141000 Phaseolus vulgaris HOM05D002854 ORTHO05D003051 5.6e-06 54.3 92 46.7
Cfa017827 Carpinus fangiana HOM05D002854 ORTHO05D003051 7.3e-06 53.9 92 45.7
CiPaw.15G085000 Carya illinoinensis HOM05D002854 ORTHO05D003051 9.6e-06 53.5 92 42.4
QL10p041748 Quercus lobata HOM05D002854 ORTHO05D003051 9.6e-06 53.5 94 42.6


User provided reference genes

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