Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 3.2e-130 468.4 234 100.0
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 7.9e-68 261.2 234 57.3
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 6.0e-60 235.0 234 52.6
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 3.3e-58 229.2 234 50.0
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 9.6e-58 227.6 234 50.0
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 9.6e-58 227.6 234 50.4
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.1e-57 226.5 234 51.3
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 3.7e-57 225.7 234 49.6
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 4.8e-57 225.3 234 49.6
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 1.4e-56 223.8 234 49.6
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 3.1e-56 222.6 234 48.7
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 5.3e-56 221.9 234 48.7
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 6.9e-56 221.5 234 48.7
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 9.0e-56 221.1 234 48.7
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.5e-55 220.3 234 47.9
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.5e-55 220.3 234 49.6
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 2.6e-55 219.5 234 49.6
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 2.6e-55 219.5 234 46.6
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 4.5e-55 218.8 234 48.7
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 4.5e-55 218.8 234 46.6
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 4.5e-55 218.8 234 50.4
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.5e-55 218.8 234 48.3
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 5.9e-55 218.4 234 49.1
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 7.6e-55 218.0 234 49.1
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 7.6e-55 218.0 234 49.1
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 7.6e-55 218.0 234 48.7
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 7.6e-55 218.0 234 46.6
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 7.6e-55 218.0 233 48.1
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 1.0e-54 217.6 247 47.0
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.0e-54 217.6 234 48.7
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 1.3e-54 217.2 248 46.8
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 1.3e-54 217.2 234 47.9
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 1.3e-54 217.2 234 47.9
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 2.2e-54 216.5 228 47.4
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 2.2e-54 216.5 234 48.3
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 2.2e-54 216.5 234 47.9
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.9e-54 216.1 234 48.3
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 3.8e-54 215.7 234 47.9
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 3.8e-54 215.7 234 48.7
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 5.0e-54 215.3 234 48.3
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 5.0e-54 215.3 234 50.0
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 6.5e-54 214.9 234 48.7
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 6.5e-54 214.9 234 49.1
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 6.5e-54 214.9 234 47.0
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 8.5e-54 214.5 234 47.0
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 8.5e-54 214.5 234 47.9
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 8.5e-54 214.5 234 47.9
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 8.5e-54 214.5 234 48.7
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 1.1e-53 214.2 234 50.0
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.1e-53 214.2 234 49.1
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 1.4e-53 213.8 234 46.6
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 1.4e-53 213.8 234 49.1
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.9e-53 213.4 234 48.7
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.9e-53 213.4 234 47.0
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 2.5e-53 213.0 234 46.6
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 2.5e-53 213.0 234 47.9
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 3.2e-53 212.6 234 49.1
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 3.2e-53 212.6 234 47.0
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 3.2e-53 212.6 234 46.6
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 5.5e-53 211.8 234 48.3
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 5.5e-53 211.8 234 47.4
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 5.5e-53 211.8 234 47.4
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 5.5e-53 211.8 228 48.2
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 5.5e-53 211.8 234 47.9
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 5.5e-53 211.8 234 47.0
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 9.3e-53 211.1 234 46.6
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 9.3e-53 211.1 234 46.2
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 9.3e-53 211.1 228 48.2
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 9.3e-53 211.1 234 47.0
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 9.3e-53 211.1 234 46.6
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.2e-52 210.7 234 47.0
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 1.6e-52 210.3 234 47.0
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 1.6e-52 210.3 234 47.4
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.1e-52 209.9 268 44.4
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 2.1e-52 209.9 234 47.9
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.7e-52 209.5 234 46.2
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 3.6e-52 209.1 234 47.0
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 3.6e-52 209.1 218 48.6
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 4.6e-52 208.8 228 47.8
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 4.6e-52 208.8 235 46.8
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 6.1e-52 208.4 214 48.6
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 6.1e-52 208.4 235 46.4
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 7.9e-52 208.0 234 45.7
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 7.9e-52 208.0 234 45.3
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.0e-51 207.6 208 52.4
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.0e-51 207.6 234 47.0
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 1.0e-51 207.6 234 47.0
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.3e-51 207.2 208 51.9
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.3e-51 207.2 234 46.6
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.3e-51 207.2 228 46.5
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 3.0e-51 206.1 236 46.2
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 3.0e-51 206.1 236 46.2
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 3.0e-51 206.1 214 49.1
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.9e-51 205.7 235 47.7
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 3.9e-51 205.7 234 46.2
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 3.9e-51 205.7 234 46.6
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.9e-51 205.7 250 44.0
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 5.1e-51 205.3 214 49.1
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 6.7e-51 204.9 208 51.4
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 6.7e-51 204.9 234 46.6
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 6.7e-51 204.9 234 47.4
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 6.7e-51 204.9 251 46.2
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 8.7e-51 204.5 236 46.2
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.1e-50 204.1 234 44.9
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 1.9e-50 203.4 234 45.7
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 1.9e-50 203.4 234 45.7
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 1.9e-50 203.4 234 45.3
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 2.5e-50 203.0 234 45.7
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 2.5e-50 203.0 271 43.2
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 2.5e-50 203.0 234 45.3
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 3.3e-50 202.6 208 49.0
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 5.7e-50 201.8 234 45.3
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 5.7e-50 201.8 210 50.5
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 5.7e-50 201.8 233 47.2
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 9.7e-50 201.1 208 50.5
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 9.7e-50 201.1 241 45.2
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.3e-49 200.7 234 46.2
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.6e-49 200.3 229 47.6
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.2e-49 199.9 234 45.7
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 2.2e-49 199.9 207 48.8
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.4e-48 196.4 204 49.0
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 2.4e-48 196.4 202 50.5
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 5.3e-48 195.3 236 44.9
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.5e-47 193.7 252 42.1
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 4.5e-47 192.2 183 54.6
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 4.5e-47 192.2 234 42.7
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.3e-46 190.7 234 44.0
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 6.5e-46 188.3 203 46.8
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 1.1e-45 187.6 234 41.9
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 3.6e-44 182.6 221 45.2
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 6.1e-44 181.8 234 42.7
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 7.9e-44 181.4 233 41.6
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 3.0e-43 179.5 233 44.6
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 5.1e-43 178.7 234 42.3
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.1e-42 177.6 206 45.6
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 2.6e-42 176.4 235 45.5
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.6e-42 176.4 304 37.5
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 2.6e-42 176.4 234 44.0
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 3.3e-42 176.0 234 41.9
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 7.4e-42 174.9 196 48.5
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 1.1e-40 171.0 225 39.6
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.8e-40 170.2 234 40.2
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 6.5e-38 161.8 234 40.2
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 4.2e-37 159.1 233 42.1
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.1e-36 156.8 303 32.7
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 5.2e-35 152.1 168 45.2
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 6.7e-35 151.8 168 44.0
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 5.3e-32 142.1 147 51.7
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 9.1e-32 141.4 234 35.9
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 2.0e-31 140.2 168 44.0
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.6e-31 139.8 183 44.3
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 5.0e-30 135.6 137 49.6
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 5.5e-29 132.1 207 38.2
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 8.5e-22 108.2 166 39.8
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 5.5e-21 105.5 99 54.5
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 7.2e-21 105.1 121 46.3
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 9.4e-21 104.8 99 50.5
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 5.4e-16 89.0 101 45.5
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.3e-14 83.6 97 44.3
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.9e-13 80.5 106 42.5
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 2.5e-13 80.1 76 52.6
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 4.2e-13 79.3 118 36.4
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 4.2e-13 79.3 118 36.4
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 6.8e-11 72.0 59 64.4
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 9.8e-10 68.2 83 39.8
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 8.3e-09 65.1 61 47.5
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.8e-08 63.9 61 52.5


User provided reference genes

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