Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g158250 Chlamydomonas reinhardtii HOM05D005331 ORTHO05D007596 3.2e-307 1057.7 606 100.0
CBR_g25857 Chara braunii HOM05D005331 ORTHO05D007596 1.9e-25 121.7 516 27.1
Psat3g064480 Pisum sativum HOM05D005331 ORTHO05D007596 1.6e-24 118.6 509 26.9
Aqoxy2G03313 Aquilegia oxysepala HOM05D005331 ORTHO05D007596 3.6e-24 117.5 503 26.6
PGR044G2121 Punica granatum HOM05D005331 ORTHO05D007596 4.8e-24 117.1 507 26.6
TAR633G1479 Trochodendron aralioides HOM05D005331 ORTHO05D007596 8.1e-24 116.3 505 26.7
Nn1g02210 Nelumbo nucifera HOM05D005331 ORTHO05D007596 1.1e-23 115.9 504 26.0
Phvul.001G150500 Phaseolus vulgaris HOM05D005331 ORTHO05D007596 1.1e-23 115.9 506 26.5
TPR.G6149 Trifolium pratense HOM05D005331 ORTHO05D007596 1.8e-23 115.2 505 26.7
Medtr7g094800 Medicago truncatula HOM05D005331 ORTHO05D007596 5.3e-23 113.6 509 26.3
Manes.05G075600 Manihot esculenta HOM05D005331 ORTHO05D007596 6.9e-23 113.2 505 26.5
VMungo1383G2522 Vigna mungo HOM05D005331 ORTHO05D007596 9.0e-23 112.8 506 26.5
Glyma.03G153100 Glycine max HOM05D005331 ORTHO05D007596 1.5e-22 112.1 508 26.6
Lj1g0019807 Lotus japonicus HOM05D005331 ORTHO05D007596 2.0e-22 111.7 510 26.1
Prupe.8G241800 Prunus persica HOM05D005331 ORTHO05D007596 2.6e-22 111.3 509 25.5
Eucgr.K03374 Eucalyptus grandis HOM05D005331 ORTHO05D007596 3.4e-22 110.9 512 26.0
PSO170G4087 Papaver somniferum HOM05D005331 ORTHO05D007596 3.4e-22 110.9 508 25.4
PSO302G0146 Papaver somniferum HOM05D005331 ORTHO05D007596 3.4e-22 110.9 508 25.6
arahy.Tifrunner.gnm1.ann1.Z72PTZ Arachis hypogaea HOM05D005331 ORTHO05D007596 4.5e-22 110.5 513 26.7
Lalb_Chr01g0013751 Lupinus albus HOM05D005331 ORTHO05D007596 5.8e-22 110.2 510 26.5
Lj2A469T42 Lonicera japonica HOM05D005331 ORTHO05D007596 7.6e-22 109.8 506 26.5
AUR62018058 Chenopodium quinoa HOM05D005331 ORTHO05D007596 1.3e-21 109.0 510 26.9
MD11G1286500 Malus domestica HOM05D005331 ORTHO05D007596 1.3e-21 109.0 510 25.7
CSS0010605 Camellia sinensis var. sinensis HOM05D005331 ORTHO05D007596 1.7e-21 108.6 508 26.4
CSS0033819 Camellia sinensis var. sinensis HOM05D005331 ORTHO05D007596 1.7e-21 108.6 508 26.4
Sabra02G0043800 Salix brachista HOM05D005331 ORTHO05D007596 1.7e-21 108.6 509 26.1
Thecc.01G280200 Theobroma cacao HOM05D005331 ORTHO05D007596 1.7e-21 108.6 505 25.3
Gohir.D12G004900 Gossypium hirsutum HOM05D005331 ORTHO05D007596 2.2e-21 108.2 505 25.5
MD03G1266100 Malus domestica HOM05D005331 ORTHO05D007596 2.2e-21 108.2 510 25.5
RcHm_v2.0_Chr6g0291131 Rosa chinensis HOM05D005331 ORTHO05D007596 2.2e-21 108.2 509 25.3
TWI14G1044 Tripterygium wilfordii HOM05D005331 ORTHO05D007596 2.2e-21 108.2 508 26.0
CANSAT25G3094 Cannabis sativa HOM05D005331 ORTHO05D007596 2.9e-21 107.8 511 25.6
HanXRQChr10g0282731 Helianthus annuus HOM05D005331 ORTHO05D007596 2.9e-21 107.8 507 27.2
Potri.002G053900 Populus trichocarpa HOM05D005331 ORTHO05D007596 2.9e-21 107.8 509 25.7
QL12p021971 Quercus lobata HOM05D005331 ORTHO05D007596 3.8e-21 107.5 506 26.5
EL10Ac4g08368 Beta vulgaris HOM05D005331 ORTHO05D007596 4.9e-21 107.1 516 26.2
BcaB01g04039 Brassica carinata HOM05D005331 ORTHO05D007596 4.9e-21 107.1 514 26.5
AUR62015257 Chenopodium quinoa HOM05D005331 ORTHO05D007596 4.9e-21 107.1 510 26.7
Actinidia24888 Actinidia chinensis HOM05D005331 ORTHO05D007596 6.4e-21 106.7 509 26.5
AL4G26780 Arabidopsis lyrata HOM05D005331 ORTHO05D007596 6.4e-21 106.7 506 25.9
Duzib138G0982 Durio zibethinus HOM05D005331 ORTHO05D007596 6.4e-21 106.7 505 25.3
Gorai.008G004800 Gossypium raimondii HOM05D005331 ORTHO05D007596 6.4e-21 106.7 505 25.5
Sed0009831 Sechium edule HOM05D005331 ORTHO05D007596 6.4e-21 106.7 510 25.3
AT2G31530 Arabidopsis thaliana HOM05D005331 ORTHO05D007596 8.4e-21 106.3 506 25.9
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 8.4e-21 106.3 532 24.8
SGA_v2.0_scaffold81G25989 Striga asiatica HOM05D005331 ORTHO05D007596 8.4e-21 106.3 521 25.0
Carub.0004s1284 Capsella rubella HOM05D005331 ORTHO05D007596 1.1e-20 105.9 506 25.9
HanXRQChr13g0386871 Helianthus annuus HOM05D005331 ORTHO05D007596 1.1e-20 105.9 507 27.0
ClCG07G000230 Citrullus lanatus HOM05D005331 ORTHO05D007596 1.4e-20 105.5 510 25.3
MELO3C014403.2 Cucumis melo HOM05D005331 ORTHO05D007596 1.4e-20 105.5 514 26.1
Gohir.A12G005400 Gossypium hirsutum HOM05D005331 ORTHO05D007596 1.4e-20 105.5 505 25.3
A03p17680 Brassica napus HOM05D005331 ORTHO05D007596 1.9e-20 105.1 506 26.1
BraA03t11033Z Brassica rapa HOM05D005331 ORTHO05D007596 1.9e-20 105.1 506 26.1
CsaV3_6G037090 Cucumis sativus L. HOM05D005331 ORTHO05D007596 1.9e-20 105.1 510 25.7
BcaC01g05946 Brassica carinata HOM05D005331 ORTHO05D007596 2.4e-20 104.8 506 26.1
Ciclev10023848m.g Citrus clementina HOM05D005331 ORTHO05D007596 3.2e-20 104.4 504 24.6
Os05g0397700 Oryza sativa ssp. japonica HOM05D005331 ORTHO05D007596 3.2e-20 104.4 508 26.0
Sc24g0003040 Simmondsia chinensis HOM05D005331 ORTHO05D007596 3.2e-20 104.4 513 26.3
AagrBONN_evm.TU.Sc2ySwM_344.2919 Anthoceros agrestis HOM05D005331 ORTHO05D007596 4.2e-20 104.0 518 26.6
CARHR125170 Cardamine hirsuta HOM05D005331 ORTHO05D007596 5.4e-20 103.6 506 25.7
ECA247G2661 Erigeron canadensis HOM05D005331 ORTHO05D007596 5.4e-20 103.6 510 25.3
Thhalv10016447m.g Eutrema salsugineum HOM05D005331 ORTHO05D007596 5.4e-20 103.6 506 25.9
Atru.chr5.1429 Acer truncatum HOM05D005331 ORTHO05D007596 9.3e-20 102.8 506 25.5
Pp3c15_8820 Physcomitrium patens HOM05D005331 ORTHO05D007596 9.3e-20 102.8 509 25.5
Sopen09g026840 Solanum pennellii HOM05D005331 ORTHO05D007596 9.3e-20 102.8 508 24.6
GSVIVG01011128001 Vitis vinifera HOM05D005331 ORTHO05D007596 1.2e-19 102.4 505 26.1
Lsat_1_v5_gn_9_3840 Lactuca sativa HOM05D005331 ORTHO05D007596 1.6e-19 102.1 505 25.7
Migut.N02164 Erythranthe guttata HOM05D005331 ORTHO05D007596 2.1e-19 101.7 515 26.0
Solyc09g065120.4 Solanum lycopersicum HOM05D005331 ORTHO05D007596 2.7e-19 101.3 504 24.8
CiPaw.08G104900 Carya illinoinensis HOM05D005331 ORTHO05D007596 3.5e-19 100.9 515 25.6
Cc01_g19540 Coffea canephora HOM05D005331 ORTHO05D007596 3.5e-19 100.9 503 26.2
Ca_08578_v3 Cicer arietinum L. HOM05D005331 ORTHO05D007596 7.9e-19 99.8 246 34.1
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.0e-18 99.4 514 24.3
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 1.0e-18 99.4 528 24.1
Nitab4.5_0001028g0020 Nicotiana tabacum HOM05D005331 ORTHO05D007596 1.0e-18 99.4 547 24.7
HPP92_001334 Vanilla planifolia HOM05D005331 ORTHO05D007596 2.3e-18 98.2 510 24.9
Aa31LG5G5400 Aethionema arabicum HOM05D005331 ORTHO05D007596 3.0e-18 97.8 519 24.9
vmacro14920 Vaccinium macrocarpon HOM05D005331 ORTHO05D007596 5.1e-18 97.1 482 25.7
Peaxi162Scf01622g00017 Petunia axillaris HOM05D005331 ORTHO05D007596 6.7e-18 96.7 510 24.3
PRCOL_00001282 Prasinoderma coloniale HOM05D006856 ORTHO05D008513 6.7e-18 96.7 533 25.1
C03p20770 Brassica napus HOM05D005331 ORTHO05D007596 1.5e-17 95.5 486 25.9
THA.LOC104817518 Tarenaya hassleriana HOM05D005331 ORTHO05D007596 1.9e-17 95.1 508 25.2
CDE04G0111 Ceratophyllum demersum HOM05D005331 ORTHO05D007596 5.6e-17 93.6 524 23.7
Mapoly0002s0128 Marchantia polymorpha HOM05D005331 ORTHO05D007596 1.6e-16 92.0 508 24.2
Haze_04717 Corylus avellana HOM05D005331 ORTHO05D007596 2.1e-16 91.7 506 25.7
Sp4g13980 Schrenkiella parvula HOM05D005331 ORTHO05D007596 2.1e-16 91.7 458 26.0
Rhsim01G0275000 Rhododendron simsii HOM05D005331 ORTHO05D007596 8.1e-16 89.7 518 24.1
arahy.Tifrunner.gnm1.ann1.BTF7DQ Arachis hypogaea HOM05D005331 ORTHO05D007596 5.3e-15 87.0 526 25.7
FvH4_2g23670 Fragaria vesca HOM05D005331 ORTHO05D007596 2.0e-14 85.1 411 25.1
Zm00001eb287470 Zea mays HOM05D005331 ORTHO05D007596 3.4e-14 84.3 250 32.8
Cpa.g.sc52.30 Carica papaya HOM05D005331 ORTHO05D007596 9.9e-14 82.8 246 33.3
COL.COLO4_09103 Corchorus olitorius HOM05D005331 ORTHO05D007596 1.3e-13 82.4 212 32.5
Dinv34748 Davidia involucrata HOM05D005331 ORTHO05D007596 1.7e-13 82.0 386 25.9
ATR0626G344 Amborella trichopoda HOM05D005331 ORTHO05D007596 6.4e-13 80.1 479 24.0
Oeu028078.2 Olea europaea HOM05D005331 ORTHO05D007596 9.3e-12 76.3 402 24.4
SalBow6G0673 Salvia bowleyana HOM05D005331 ORTHO05D007596 1.8e-10 72.0 513 23.2
BolC3t14446H Brassica oleracea HOM05D005331 ORTHO05D007596 3.0e-10 71.2 258 31.4
Nitab4.5_0010448g0040 Nicotiana tabacum HOM05D005331 ORTHO05D007596 5.1e-10 70.5 507 23.1
Hma1.2p1_0257F.1_g103510 Hydrangea macrophylla HOM05D005331 ORTHO05D007596 1.1e-09 69.3 388 24.2
DCAR_012471 Daucus carota HOM05D005331 ORTHO05D007596 2.5e-09 68.2 485 25.2
DCAR_032170 Daucus carota HOM05D005331 ORTHO05D007596 9.6e-09 66.2 485 24.5
SMO275G0046 Selaginella moellendorffii HOM05D005331 ORTHO05D007596 1.4e-07 62.4 499 21.8
unitig_744.g24627 Utricularia gibba HOM05D005331 ORTHO05D007596 3.1e-07 61.2 498 22.3
SMO147G0170 Selaginella moellendorffii HOM05D006856 ORTHO05D008513 4.0e-07 60.8 232 29.3
Cre16.g681900 Chlamydomonas reinhardtii HOM05D006856 ORTHO05D008513 4.5e-06 57.4 241 25.7
AagrBONN_evm.TU.Sc2ySwM_368.1345 Anthoceros agrestis HOM05D006856 ORTHO05D008513 5.8e-06 57.0 229 28.8


User provided reference genes

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