Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 4.0e-165 584.7 299 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 1.0e-27 128.3 250 34.4
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 8.6e-27 125.2 278 33.1
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 2.0e-23 114.0 248 32.7
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 9.9e-23 111.7 261 31.0
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 6.6e-19 99.0 244 30.3
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 2.5e-18 97.1 266 30.5
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 3.3e-18 96.7 240 31.2
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 5.6e-18 95.9 246 28.9
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 7.3e-18 95.5 246 28.5
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 1.6e-17 94.4 247 30.8
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 2.8e-17 93.6 249 30.1
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 2.8e-17 93.6 245 28.6
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 3.6e-17 93.2 253 28.9
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 3.6e-17 93.2 253 29.2
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 4.7e-17 92.8 246 28.9
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 8.1e-17 92.0 284 26.4
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 8.1e-17 92.0 249 29.3
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 1.1e-16 91.7 263 28.9
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.4e-16 91.3 240 28.3
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 1.8e-16 90.9 247 28.7
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.4e-16 90.5 227 28.6
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.4e-16 90.5 240 28.3
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 2.4e-16 90.5 248 29.0
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 3.1e-16 90.1 247 28.7
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 6.8e-16 89.0 242 27.3
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 6.8e-16 89.0 241 29.5
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 8.9e-16 88.6 261 28.7
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 1.5e-15 87.8 273 27.5
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 1.5e-15 87.8 271 28.0
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 2.0e-15 87.4 270 27.4
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 2.0e-15 87.4 244 27.5
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 2.0e-15 87.4 247 29.6
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 2.0e-15 87.4 245 28.6
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 2.0e-15 87.4 244 29.1
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 2.0e-15 87.4 244 27.9
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 2.6e-15 87.0 244 28.7
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 3.4e-15 86.7 270 29.3
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 3.4e-15 86.7 247 26.7
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 3.4e-15 86.7 291 29.9
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 4.4e-15 86.3 268 26.9
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 4.4e-15 86.3 252 27.4
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 4.4e-15 86.3 244 26.6
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 4.4e-15 86.3 242 28.1
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 5.8e-15 85.9 242 28.9
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 5.8e-15 85.9 270 27.8
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 5.8e-15 85.9 274 27.4
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 5.8e-15 85.9 245 27.8
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 9.9e-15 85.1 244 28.3
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 1.3e-14 84.7 270 27.0
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 1.3e-14 84.7 270 27.0
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 1.3e-14 84.7 286 26.6
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 1.3e-14 84.7 272 27.9
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 1.3e-14 84.7 273 27.1
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 1.3e-14 84.7 246 28.5
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 1.7e-14 84.3 255 26.3
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 1.7e-14 84.3 276 27.9
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 1.7e-14 84.3 254 26.0
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 1.7e-14 84.3 273 26.7
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 1.7e-14 84.3 244 27.5
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 2.2e-14 84.0 241 29.0
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 2.2e-14 84.0 270 27.0
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 2.2e-14 84.0 270 27.0
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 2.2e-14 84.0 274 28.1
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 2.2e-14 84.0 274 28.1
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 2.9e-14 83.6 259 25.9
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 2.9e-14 83.6 244 27.9
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 2.9e-14 83.6 245 28.2
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 3.8e-14 83.2 272 27.6
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 3.8e-14 83.2 259 25.9
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 4.9e-14 82.8 248 27.0
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 4.9e-14 82.8 279 26.5
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 6.4e-14 82.4 276 27.5
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 6.4e-14 82.4 248 27.0
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 8.4e-14 82.0 268 27.2
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 8.4e-14 82.0 122 39.3
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 1.1e-13 81.6 284 25.7
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 1.1e-13 81.6 247 27.9
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 1.4e-13 81.3 257 27.6
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 1.4e-13 81.3 272 26.8
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 4.2e-13 79.7 248 27.4
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 5.4e-13 79.3 255 26.3
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 5.4e-13 79.3 243 26.3
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 7.1e-13 79.0 247 25.9
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 9.2e-13 78.6 282 27.3
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 1.2e-12 78.2 244 25.4
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 1.6e-12 77.8 119 34.5
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 1.6e-12 77.8 241 27.4
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 2.1e-12 77.4 240 27.1
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 2.1e-12 77.4 268 27.2
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 2.7e-12 77.0 252 27.8
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 4.6e-12 76.3 252 26.2
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 6.0e-12 75.9 280 25.7
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 1.0e-11 75.1 235 26.0
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 1.0e-11 75.1 276 26.1
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 1.0e-11 75.1 289 27.7
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.3e-11 74.7 299 24.7
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 1.7e-11 74.3 250 26.4
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 2.3e-11 73.9 266 24.8
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 3.9e-11 73.2 288 26.4
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 6.6e-11 72.4 308 23.7
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 1.9e-10 70.9 114 33.3
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 3.3e-10 70.1 231 28.1
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 3.3e-10 70.1 255 24.3
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 5.6e-10 69.3 238 25.2
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 7.3e-10 68.9 115 33.9
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 1.6e-09 67.8 201 26.9
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 3.6e-09 66.6 119 32.8
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 8.1e-09 65.5 228 25.9
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 5.3e-08 62.8 111 34.2
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 3.4e-07 60.1 89 41.6
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 8.4e-06 55.5 281 24.6


User provided reference genes

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