Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.0e-181 640.2 384 100.0
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 1.8e-45 187.6 308 39.6
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 2.4e-45 187.2 380 36.3
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 3.1e-45 186.8 310 39.0
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 5.3e-45 186.0 308 39.3
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 5.3e-45 186.0 308 39.6
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 6.9e-45 185.7 306 38.9
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 1.5e-44 184.5 313 38.7
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 2.0e-44 184.1 315 38.4
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 2.0e-44 184.1 315 38.4
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 2.0e-44 184.1 315 38.4
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 2.6e-44 183.7 315 38.1
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 3.4e-44 183.3 313 38.3
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 4.5e-44 183.0 315 38.1
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 4.9e-43 179.5 332 36.7
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 4.2e-42 176.4 354 35.6
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 5.5e-42 176.0 381 34.4
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 1.2e-41 174.9 314 37.9
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 1.6e-41 174.5 388 33.0
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 2.1e-41 174.1 308 37.7
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 2.7e-41 173.7 309 39.2
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 3.5e-41 173.3 312 37.5
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 4.6e-41 172.9 310 37.4
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 6.0e-41 172.6 357 35.0
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 7.9e-41 172.2 357 35.0
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 7.9e-41 172.2 375 33.9
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 1.0e-40 171.8 367 35.1
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.3e-40 171.4 308 36.7
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 1.8e-40 171.0 364 33.2
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 2.3e-40 170.6 370 32.4
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 3.0e-40 170.2 386 30.8
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 3.9e-40 169.9 386 31.1
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 3.9e-40 169.9 364 35.2
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 3.9e-40 169.9 263 40.7
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 5.1e-40 169.5 312 37.2
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 5.1e-40 169.5 313 37.1
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 6.7e-40 169.1 262 40.8
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 1.1e-39 168.3 365 33.4
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 1.5e-39 167.9 335 34.6
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.5e-39 167.9 239 43.5
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.5e-39 167.9 308 42.2
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.5e-39 167.9 322 35.4
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 1.9e-39 167.5 312 35.3
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.5e-39 167.2 286 39.5
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.3e-39 166.8 353 33.7
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.3e-39 166.8 353 33.7
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 3.3e-39 166.8 365 38.9
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 4.3e-39 166.4 237 41.4
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 5.7e-39 166.0 272 36.8
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 5.7e-39 166.0 265 40.4
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 7.4e-39 165.6 325 33.5
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 7.4e-39 165.6 262 39.3
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 7.4e-39 165.6 230 41.7
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 9.6e-39 165.2 286 37.8
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 9.6e-39 165.2 325 35.4
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 9.6e-39 165.2 353 33.7
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 9.6e-39 165.2 275 39.6
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 9.6e-39 165.2 323 34.7
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 1.3e-38 164.9 281 38.4
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 1.3e-38 164.9 232 41.4
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 1.3e-38 164.9 279 36.9
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.3e-38 164.9 290 34.8
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 1.6e-38 164.5 236 41.1
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 1.6e-38 164.5 390 32.1
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 1.6e-38 164.5 359 34.3
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 1.6e-38 164.5 225 42.2
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 2.1e-38 164.1 388 34.8
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 2.1e-38 164.1 224 41.5
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 2.8e-38 163.7 316 36.4
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 2.8e-38 163.7 367 33.8
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 2.8e-38 163.7 265 40.0
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 2.8e-38 163.7 261 40.2
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 2.8e-38 163.7 382 33.0
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 3.7e-38 163.3 228 41.2
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 4.8e-38 162.9 326 34.4
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 6.3e-38 162.5 262 38.9
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 8.2e-38 162.2 370 36.5
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 8.2e-38 162.2 226 42.0
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 8.2e-38 162.2 239 42.7
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 1.1e-37 161.8 227 42.3
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 1.1e-37 161.8 275 38.5
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.1e-37 161.8 320 34.7
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 1.4e-37 161.4 313 34.5
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 1.8e-37 161.0 385 32.2
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.4e-37 160.6 284 38.4
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 2.4e-37 160.6 263 38.8
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 2.4e-37 160.6 312 34.6
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 3.1e-37 160.2 313 34.5
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 4.1e-37 159.8 277 37.9
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 5.3e-37 159.5 357 32.5
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 6.9e-37 159.1 232 40.9
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 6.9e-37 159.1 269 37.9
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.9e-37 159.1 224 40.6
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 9.0e-37 158.7 220 42.7
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 9.0e-37 158.7 286 37.4
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 9.0e-37 158.7 256 37.9
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.2e-36 158.3 210 41.9
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 1.2e-36 158.3 210 42.4
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 2.0e-36 157.5 371 31.8
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 2.0e-36 157.5 227 41.4
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 2.6e-36 157.1 326 32.8
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 1.3e-35 154.8 308 34.7
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.3e-35 154.8 374 32.4
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 1.3e-35 154.8 365 31.2
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.7e-35 154.5 380 32.1
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 6.5e-35 152.5 380 31.8
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.9e-34 151.0 209 42.1
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 1.9e-34 151.0 204 41.7
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.5e-34 150.6 373 31.9
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 2.5e-34 150.6 314 34.4
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 1.6e-33 147.9 274 37.6
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 3.6e-33 146.7 257 36.2
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 2.0e-28 131.0 316 32.3
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 2.6e-28 130.6 210 40.0
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 7.7e-28 129.0 306 33.0
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 2.1e-25 120.9 292 30.5
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 3.3e-23 113.6 292 31.2
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 3.3e-23 113.6 292 31.2
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 4.4e-23 113.2 288 30.2
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 7.4e-23 112.5 181 38.1
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 9.4e-18 95.5 190 32.6
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.1e-15 88.6 204 30.9
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.1e-15 88.6 204 30.9
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 4.4e-15 86.7 95 47.4
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 2.8e-14 84.0 117 42.7
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 1.3e-11 75.1 92 41.3
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 3.8e-11 73.6 61 59.0
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 1.3e-06 58.5 165 31.5
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 1.3e-06 58.5 169 31.4
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 2.8e-06 57.4 83 43.4
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 2.8e-06 57.4 55 56.4


User provided reference genes

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