Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 0.0e+00 3994.9 2276 100.0
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 1.4e-225 788.5 2014 31.8
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 3.9e-220 770.4 2246 30.2
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 3.3e-219 767.3 1952 31.7
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 5.6e-219 766.5 1965 30.6
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 4.3e-211 740.3 1957 29.3
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.3e-210 738.8 2266 28.3
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.3e-210 738.8 2170 28.5
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.1e-209 735.7 1964 29.7
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.8e-209 734.9 1961 29.6
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 1.2e-208 732.3 1968 29.4
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 1.2e-208 732.3 1959 30.0
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.5e-208 731.9 1962 29.7
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.5e-208 731.9 2183 29.7
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 5.8e-208 729.9 1963 29.2
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.3e-207 728.8 1960 29.4
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 2.2e-207 728.0 1977 29.8
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 2.2e-207 728.0 1966 29.5
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 4.9e-207 726.9 2187 29.2
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 4.9e-207 726.9 1955 29.4
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 8.4e-207 726.1 1955 29.6
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 1.9e-206 724.9 1973 29.3
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 4.2e-206 723.8 2196 28.7
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 5.4e-206 723.4 1985 29.3
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.2e-205 722.2 2276 27.9
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 2.7e-205 721.1 2297 28.5
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 2.7e-205 721.1 1989 29.7
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 4.6e-205 720.3 2193 29.0
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 6.0e-205 719.9 2311 27.9
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 6.0e-205 719.9 2182 28.5
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 7.9e-205 719.5 1961 29.3
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.0e-204 719.2 1955 29.5
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 3.0e-204 717.6 2168 28.4
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.0e-204 717.6 1964 29.4
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 3.9e-204 717.2 1954 29.1
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 8.7e-204 716.1 2195 28.5
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.1e-203 715.7 2308 28.0
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.1e-203 715.7 2284 28.7
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 7.4e-203 713.0 1958 30.2
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 9.6e-203 712.6 1967 28.9
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 9.6e-203 712.6 1962 29.6
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.3e-202 712.2 2202 28.5
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 1.6e-202 711.8 1961 29.2
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 2.1e-202 711.4 1954 29.0
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 2.1e-202 711.4 2288 29.0
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 2.1e-202 711.4 2287 28.3
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 2.1e-202 711.4 2171 29.3
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.8e-202 711.1 1956 29.1
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 4.8e-202 710.3 1961 29.1
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 6.2e-202 709.9 1980 29.2
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 6.2e-202 709.9 2286 28.9
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 8.1e-202 709.5 2173 29.0
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 8.1e-202 709.5 1954 28.5
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 1.1e-201 709.1 1964 29.3
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.1e-201 709.1 1954 29.0
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.8e-201 708.4 1958 29.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 2.4e-201 708.0 1954 29.1
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 4.0e-201 707.2 1958 29.1
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 4.0e-201 707.2 1978 29.0
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 6.9e-201 706.4 1960 29.0
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 9.0e-201 706.1 2330 27.9
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.5e-200 705.3 1964 29.0
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.0e-200 704.9 1971 29.0
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 2.0e-200 704.9 2090 28.2
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 3.4e-200 704.1 1960 29.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 3.4e-200 704.1 1964 29.5
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 5.8e-200 703.4 1977 29.2
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 3.8e-199 700.7 1982 29.1
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 6.5e-199 699.9 2173 28.9
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 3.2e-198 697.6 2162 28.1
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 5.5e-198 696.8 1970 29.8
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 7.1e-198 696.4 1964 28.1
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.2e-197 695.7 1937 28.8
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.2e-197 695.7 1968 28.8
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 1.2e-197 695.7 1950 29.2
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 4.6e-197 693.7 1988 29.7
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 7.9e-197 693.0 2271 27.5
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.0e-196 692.6 2248 29.0
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 3.0e-196 691.0 2251 27.1
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 3.9e-196 690.6 2287 27.9
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 8.7e-196 689.5 2166 28.3
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 2.5e-195 688.0 1986 29.4
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 3.3e-195 687.6 2172 28.4
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 3.3e-195 687.6 2172 28.5
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 3.3e-195 687.6 2172 28.4
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 7.4e-195 686.4 2242 27.8
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 9.6e-195 686.0 2269 27.1
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 2.1e-194 684.9 1959 28.8
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 2.8e-194 684.5 2261 26.6
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 5.8e-192 676.8 1961 29.1
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.3e-191 675.6 1972 28.4
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 3.8e-191 674.1 2002 28.7
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 6.5e-191 673.3 2325 27.3
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 6.5e-191 673.3 2050 28.1
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.1e-190 672.5 2274 26.9
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.1e-190 672.5 2261 27.1
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.4e-190 672.2 2269 27.1
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.5e-190 671.4 2269 27.1
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 6.7e-188 663.3 2323 27.4
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.6e-186 658.7 1970 27.9
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 2.8e-186 657.9 2083 27.7
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 2.2e-183 648.3 1992 27.9
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.2e-181 642.5 2033 28.5
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 3.6e-181 641.0 1986 29.1
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.0e-180 639.4 1827 28.8
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.5e-179 634.8 2001 27.6
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.8e-178 631.3 2325 27.3
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 4.8e-178 630.6 2246 27.7
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 4.5e-176 624.0 1477 31.0
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 4.5e-176 624.0 2093 27.4
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.0e-175 622.9 2273 27.2
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 2.2e-175 621.7 1451 30.9
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.1e-174 619.4 1957 27.4
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 2.7e-173 614.8 2033 27.4
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 6.1e-173 613.6 1953 28.5
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.5e-171 609.0 1882 28.3
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.2e-168 599.4 1814 28.3
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.1e-165 588.6 2291 25.5
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 3.6e-165 587.8 1879 27.4
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 6.1e-165 587.0 1465 30.6
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 3.0e-164 584.7 1957 27.4
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.6e-157 562.4 1949 25.6
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 2.0e-155 555.4 1983 26.4
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 4.4e-155 554.3 1938 27.3
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 3.7e-154 551.2 1927 27.3
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 9.8e-139 500.0 1385 29.7
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 1.1e-137 496.5 1021 32.8
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 1.7e-122 446.0 1784 25.8
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 3.7e-122 444.9 1496 26.8
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.0e-111 410.2 1559 26.1
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 7.6e-107 394.0 1375 26.9
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.4e-105 389.8 1919 24.4
PRCOL_00006063 Prasinoderma coloniale HOM05D002352 ORTHO05D003724 6.0e-104 384.4 2101 26.8
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 3.3e-86 325.5 1099 26.7
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 3.4e-83 315.5 826 29.9
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 1.6e-77 296.6 1456 24.9
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 2.2e-66 259.6 766 29.0
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 3.1e-60 239.2 826 27.0
Cfa027164 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.1e-46 194.1 507 31.0
Lj1A1209T60 Lonicera japonica HOM05D002352 ORTHO05D003724 3.0e-39 169.5 219 39.7
Lalb_Chr21g0313521 Lupinus albus HOM05D002352 ORTHO05D003724 1.7e-37 163.7 226 39.4
Actinidia39446 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.4e-36 159.8 307 34.5
Cpa.g.sc192.9 Carica papaya HOM05D002352 ORTHO05D003724 1.6e-35 157.1 292 35.3
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.3e-34 154.1 330 30.6
Oeu004743.1 Olea europaea HOM05D002352 ORTHO05D003724 1.4e-31 144.1 293 33.8
Hma1.2p1_0664F.1_g198970 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 2.3e-31 143.3 255 36.1
MSTRG.15909 Avicennia marina HOM05D002352 ORTHO05D003724 6.8e-31 141.7 433 28.9
Lj6g0005213 Lotus japonicus HOM05D002352 ORTHO05D003724 2.4e-28 133.3 310 31.9
Cc02_g12870 Coffea canephora HOM05D002352 ORTHO05D003724 3.5e-27 129.4 206 37.9
Eucgr.F03893 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.9e-25 123.6 212 35.8
Lalb_Chr21g0313511 Lupinus albus HOM05D002352 ORTHO05D003724 7.3e-25 121.7 280 30.0
Lsat_1_v5_gn_6_24900 Lactuca sativa HOM05D002352 ORTHO05D003724 4.7e-24 119.0 226 33.2
Os01g0816500 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 7.8e-19 101.7 250 28.4
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 5.0e-18 99.0 203 33.0
Actinidia39445 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.1e-17 97.8 407 27.5
Zm00001eb390200 Zea mays HOM05D002352 ORTHO05D003724 1.6e-16 94.0 273 27.1
Lj2C285T4 Lonicera japonica HOM05D002352 ORTHO05D003724 1.4e-15 90.9 126 42.1
Lsat_1_v5_gn_2_57060 Lactuca sativa HOM05D002352 ORTHO05D003724 1.8e-15 90.5 213 30.0
SHI23485 Sapria himalayana HOM05D002352 ORTHO05D003724 2.3e-15 90.1 117 41.0
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 1.5e-14 87.4 111 36.9
Dinv07524 Davidia involucrata HOM05D002352 ORTHO05D003724 2.0e-14 87.0 111 43.2
ECA248G2607 Erigeron canadensis HOM05D002352 ORTHO05D000452 2.0e-14 87.0 218 28.9
Medtr8g026860 Medicago truncatula HOM05D002352 ORTHO05D003724 8.3e-13 81.6 247 28.3
Eucgr.D00654 Eucalyptus grandis HOM05D002352 ORTHO05D003724 5.4e-12 79.0 302 25.2
RhsimUnG0099400 Rhododendron simsii HOM05D002352 ORTHO05D003724 5.4e-12 79.0 153 35.3
Actinidia39444 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.2e-11 77.8 133 39.8
ATR0929G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.2e-11 77.8 200 32.5
ECA248G2919 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.3e-10 74.3 137 35.0
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 1.3e-10 74.3 180 27.2
TPR.G28588 Trifolium pratense HOM05D002352 ORTHO05D014906 2.3e-10 73.6 88 42.0
Actinidia39443 Actinidia chinensis HOM05D002352 ORTHO05D003724 3.0e-10 73.2 74 48.6
arahy.Tifrunner.gnm1.ann1.52CC3C Arachis hypogaea HOM05D002352 ORTHO05D014906 8.6e-10 71.6 104 38.5
Lj1g0001052 Lotus japonicus HOM05D002352 ORTHO05D003724 1.1e-09 71.2 140 33.6
Ah.09g235800 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.3e-07 63.5 81 44.4
Aa31LG5G19350 Aethionema arabicum HOM05D002352 ORTHO05D003724 4.0e-07 62.8 193 24.9
Lsat_1_v5_gn_8_88460 Lactuca sativa HOM05D002352 ORTHO05D003724 6.8e-07 62.0 101 38.6
Hma1.2p1_1971F.1_g309590 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 8.9e-07 61.6 165 24.2
arahy.Tifrunner.gnm1.ann1.TCII1L Arachis hypogaea HOM05D002352 ORTHO05D000332 1.2e-06 61.2 72 44.4
Zm00001eb214370 Zea mays HOM05D002352 ORTHO05D016619 1.2e-06 61.2 153 28.1
arahy.Tifrunner.gnm1.ann1.KL0F8I Arachis hypogaea HOM05D002352 ORTHO05D014906 2.6e-06 60.1 182 25.8
TPR.G21592 Trifolium pratense HOM05D002352 ORTHO05D003724 5.8e-06 58.9 94 37.2


User provided reference genes

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