Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 4.3e-235 817.8 464 100.0
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 4.6e-43 179.9 447 32.0
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 3.9e-42 176.8 444 30.4
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 8.1e-40 169.1 470 33.2
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 2.3e-39 167.5 444 30.2
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 8.9e-39 165.6 463 30.2
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 1.2e-38 165.2 447 29.3
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 1.5e-38 164.9 453 30.5
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 5.8e-38 162.9 454 30.0
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 7.6e-38 162.5 444 29.3
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 9.9e-38 162.2 471 28.0
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 1.7e-37 161.4 488 31.1
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.7e-37 161.4 448 28.6
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 6.4e-37 159.5 450 28.9
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 1.1e-36 158.7 452 29.9
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 1.1e-36 158.7 446 28.5
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 1.4e-36 158.3 446 28.5
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 1.9e-36 157.9 444 30.2
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.4e-36 157.5 449 28.7
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 2.4e-36 157.5 446 28.5
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 3.2e-36 157.1 445 30.1
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 4.1e-36 156.8 444 29.7
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 5.4e-36 156.4 451 29.7
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 7.1e-36 156.0 453 30.9
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 7.1e-36 156.0 448 28.8
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 7.1e-36 156.0 474 30.4
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.2e-35 155.2 444 30.4
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 1.2e-35 155.2 444 28.8
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.2e-35 155.2 456 29.6
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 1.6e-35 154.8 444 29.3
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.1e-35 154.5 455 28.6
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 3.5e-35 153.7 454 28.2
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 4.6e-35 153.3 444 29.5
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 6.0e-35 152.9 444 29.3
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 6.0e-35 152.9 484 28.7
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 7.8e-35 152.5 425 29.6
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 7.8e-35 152.5 452 29.6
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 7.8e-35 152.5 444 29.5
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 7.8e-35 152.5 444 29.5
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 1.0e-34 152.1 454 30.2
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 1.3e-34 151.8 446 28.7
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 1.3e-34 151.8 446 29.4
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 1.7e-34 151.4 451 29.0
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 1.7e-34 151.4 448 29.5
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 1.7e-34 151.4 482 28.6
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 3.0e-34 150.6 477 29.6
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 3.0e-34 150.6 446 28.7
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 3.0e-34 150.6 475 31.4
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 3.9e-34 150.2 433 28.9
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 5.1e-34 149.8 461 28.9
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 5.1e-34 149.8 444 29.1
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 5.1e-34 149.8 447 28.6
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 6.6e-34 149.4 449 28.7
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 6.6e-34 149.4 454 30.0
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 6.6e-34 149.4 475 29.3
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 8.6e-34 149.1 461 27.3
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 1.5e-33 148.3 444 28.6
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 1.5e-33 148.3 446 28.0
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 1.9e-33 147.9 448 28.3
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.9e-33 147.9 446 30.5
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.5e-33 147.5 455 28.1
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 2.5e-33 147.5 485 29.5
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 2.5e-33 147.5 444 29.3
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 2.5e-33 147.5 444 28.6
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 3.3e-33 147.1 483 29.4
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 3.3e-33 147.1 444 27.7
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 4.3e-33 146.7 459 30.1
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 7.3e-33 146.0 446 28.3
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 7.3e-33 146.0 445 28.3
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 1.2e-32 145.2 447 28.0
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 2.1e-32 144.4 472 28.4
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 2.1e-32 144.4 473 28.5
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 2.1e-32 144.4 452 29.0
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 2.8e-32 144.1 473 28.3
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 3.6e-32 143.7 450 28.2
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 3.6e-32 143.7 446 29.4
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 4.7e-32 143.3 444 29.5
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 6.2e-32 142.9 475 28.4
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 6.2e-32 142.9 456 28.7
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 1.1e-31 142.1 472 28.8
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 1.8e-31 141.4 446 28.3
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 1.8e-31 141.4 469 27.9
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 2.4e-31 141.0 447 27.7
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.4e-31 141.0 479 26.9
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 5.2e-31 139.8 447 27.5
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 6.9e-31 139.4 476 28.4
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 6.9e-31 139.4 458 27.3
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 6.9e-31 139.4 478 28.5
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 8.9e-31 139.0 447 27.5
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 1.2e-30 138.7 429 28.7
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 1.2e-30 138.7 455 28.6
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 1.5e-30 138.3 476 28.2
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 3.4e-30 137.1 458 30.8
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 7.6e-30 136.0 456 27.6
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 1.3e-29 135.2 455 27.5
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 1.3e-29 135.2 444 27.5
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 1.3e-29 135.2 432 28.9
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.3e-29 135.2 451 30.2
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 4.9e-29 133.3 472 26.9
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 8.4e-29 132.5 447 28.6
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 1.4e-28 131.7 392 29.3
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 1.4e-28 131.7 454 30.2
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 3.2e-28 130.6 436 29.4
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 1.2e-27 128.6 454 26.9
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.6e-27 128.3 470 27.0
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 3.5e-27 127.1 478 26.8
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 2.3e-26 124.4 420 27.9
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 5.1e-26 123.2 423 27.0
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 8.7e-26 122.5 421 27.6
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 1.1e-25 122.1 410 27.8
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 2.5e-25 120.9 461 26.7
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 5.6e-25 119.8 437 27.9
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 5.3e-23 113.2 155 37.4
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 5.3e-23 113.2 445 24.9
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 1.5e-22 111.7 121 47.9
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 2.0e-22 111.3 390 27.7
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 3.8e-21 107.1 471 26.1
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 6.4e-21 106.3 476 25.6
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 1.4e-20 105.1 422 26.8
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 1.4e-20 105.1 121 44.6
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 5.4e-20 103.2 484 25.6
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 3.5e-19 100.5 131 41.2
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 4.6e-19 100.1 423 25.1
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 1.0e-18 99.0 153 38.6
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 3.9e-18 97.1 119 42.9
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 2.5e-17 94.4 107 42.1
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 3.3e-17 94.0 157 36.9
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 3.3e-17 94.0 127 43.3
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 4.3e-17 93.6 136 38.2
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 2.1e-16 91.3 139 34.5
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.1e-15 89.0 103 43.7
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 1.4e-15 88.6 161 36.6
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 1.8e-15 88.2 92 43.5
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 5.3e-15 86.7 97 43.3
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 5.5e-12 76.6 114 36.0
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 9.3e-12 75.9 118 39.0
Lj1A21T72 Lonicera japonica HOM05D005189 ORTHO05D006093 1.0e-10 72.4 77 48.1
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 5.1e-10 70.1 119 37.0
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 5.6e-09 66.6 121 33.9
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 2.1e-08 64.7 148 35.1
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 3.7e-08 63.9 144 33.3
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 6.2e-08 63.2 119 35.3
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 6.2e-08 63.2 151 35.1
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 1.4e-07 62.0 122 30.3
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 1.8e-07 61.6 120 36.7
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 1.8e-07 61.6 146 33.6
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 1.8e-07 61.6 148 34.5
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 2.4e-07 61.2 122 30.3
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 3.1e-07 60.8 119 35.3
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 3.1e-07 60.8 145 31.7
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 5.3e-07 60.1 119 35.3
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 5.3e-07 60.1 118 33.1
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 6.9e-07 59.7 120 32.5
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 9.0e-07 59.3 123 30.9
Zm00001eb092500 Zea mays HOM05D005189 ORTHO05D006093 9.0e-07 59.3 70 42.9
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 9.0e-07 59.3 76 42.1
Aqoxy22s003 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.2e-06 58.9 39 64.1
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.2e-06 58.9 120 31.7
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 1.5e-06 58.5 96 34.4
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 1.5e-06 58.5 123 33.3
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 1.5e-06 58.5 144 31.9
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 2.0e-06 58.2 119 35.3
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 2.0e-06 58.2 121 33.9
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 2.0e-06 58.2 121 32.2
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 2.0e-06 58.2 102 34.3
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 2.6e-06 57.8 145 33.8
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 3.4e-06 57.4 121 32.2
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 3.4e-06 57.4 118 35.6
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 4.5e-06 57.0 147 32.0
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 5.8e-06 56.6 132 34.1
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 5.8e-06 56.6 423 22.0
SMO143G0318 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 7.6e-06 56.2 78 39.7
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 1.0e-05 55.8 124 32.3
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 1.0e-05 55.8 123 31.7
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 1.0e-05 55.8 153 32.0


User provided reference genes

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