Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 2.6e-132 475.3 228 100.0
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.2e-51 206.5 209 48.8
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 3.8e-51 205.7 209 48.8
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 3.8e-51 205.7 209 48.8
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 3.8e-51 205.7 209 48.8
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 1.1e-50 204.1 199 50.8
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 1.1e-50 204.1 211 47.4
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 1.5e-50 203.8 202 49.5
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 1.9e-50 203.4 215 47.4
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 2.5e-50 203.0 202 49.5
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 2.5e-50 203.0 195 50.8
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 2.5e-50 203.0 195 50.3
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 2.5e-50 203.0 195 50.3
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 3.2e-50 202.6 189 51.9
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 3.2e-50 202.6 197 50.3
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 4.2e-50 202.2 210 48.1
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 4.2e-50 202.2 195 50.8
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 7.2e-50 201.4 209 48.8
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 9.4e-50 201.1 198 50.0
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 9.4e-50 201.1 197 48.2
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 9.4e-50 201.1 188 51.1
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 1.2e-49 200.7 195 50.3
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.2e-49 200.7 195 49.2
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 1.2e-49 200.7 195 50.3
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.2e-49 200.7 195 50.3
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 1.2e-49 200.7 197 47.2
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.2e-49 200.7 209 48.3
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 2.1e-49 199.9 189 50.3
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 2.7e-49 199.5 195 49.7
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 2.7e-49 199.5 189 49.7
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.7e-49 199.5 195 50.3
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.7e-49 199.5 189 49.7
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 3.6e-49 199.1 202 48.0
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 3.6e-49 199.1 202 48.0
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 4.7e-49 198.7 195 48.2
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 6.1e-49 198.4 189 50.3
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 6.1e-49 198.4 195 49.2
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 6.1e-49 198.4 195 49.7
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 6.1e-49 198.4 191 49.2
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 8.0e-49 198.0 207 47.8
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 8.0e-49 198.0 208 46.6
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 8.0e-49 198.0 198 47.5
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 8.0e-49 198.0 192 49.5
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.0e-48 197.6 198 48.5
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.0e-48 197.6 191 51.8
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.0e-48 197.6 189 50.3
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 1.0e-48 197.6 195 49.7
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.0e-48 197.6 195 48.7
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.4e-48 197.2 189 50.3
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 1.4e-48 197.2 209 46.4
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 1.4e-48 197.2 189 51.3
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.8e-48 196.8 189 50.8
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 1.8e-48 196.8 189 50.8
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.8e-48 196.8 195 49.7
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.3e-48 196.4 202 47.0
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 3.0e-48 196.1 198 48.5
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 3.0e-48 196.1 196 49.0
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 4.0e-48 195.7 210 47.6
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 4.0e-48 195.7 196 49.0
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 4.0e-48 195.7 195 48.7
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 5.2e-48 195.3 195 47.2
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 5.2e-48 195.3 195 48.2
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 5.2e-48 195.3 209 45.9
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 5.2e-48 195.3 195 48.2
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 6.8e-48 194.9 192 49.0
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 6.8e-48 194.9 195 46.2
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 6.8e-48 194.9 189 49.2
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 8.8e-48 194.5 189 48.7
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 8.8e-48 194.5 189 49.2
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 8.8e-48 194.5 189 48.7
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 8.8e-48 194.5 201 48.3
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 8.8e-48 194.5 195 48.7
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.2e-47 194.1 189 48.1
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.2e-47 194.1 189 49.7
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 2.0e-47 193.4 203 47.3
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 2.0e-47 193.4 189 49.2
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 2.0e-47 193.4 195 47.2
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.0e-47 193.4 189 49.7
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 2.6e-47 193.0 189 48.1
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 2.6e-47 193.0 189 49.7
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 2.6e-47 193.0 196 45.4
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 3.4e-47 192.6 189 49.7
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 3.4e-47 192.6 209 46.9
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 4.4e-47 192.2 234 43.6
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 4.4e-47 192.2 189 48.1
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 4.4e-47 192.2 189 48.7
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 4.4e-47 192.2 207 46.9
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 5.7e-47 191.8 189 47.6
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 5.7e-47 191.8 189 48.1
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 7.5e-47 191.4 196 46.4
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 9.8e-47 191.0 189 49.2
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 1.3e-46 190.7 197 47.7
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 1.7e-46 190.3 196 45.4
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.7e-46 190.3 189 48.7
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 1.7e-46 190.3 187 48.7
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 2.8e-46 189.5 211 46.9
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 2.8e-46 189.5 211 46.9
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 2.8e-46 189.5 195 45.6
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.8e-46 189.5 188 47.3
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 3.7e-46 189.1 195 48.2
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 3.7e-46 189.1 211 46.9
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 3.7e-46 189.1 204 47.5
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 4.8e-46 188.7 196 46.4
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 6.3e-46 188.3 195 45.6
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 8.3e-46 188.0 189 47.6
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.1e-45 187.6 195 44.6
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.4e-45 187.2 189 46.0
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 2.4e-45 186.4 195 43.6
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 7.0e-45 184.9 209 46.9
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 1.2e-44 184.1 195 45.6
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 2.9e-43 179.5 216 43.1
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 2.9e-43 179.5 189 46.6
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 5.0e-43 178.7 162 53.7
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.5e-42 177.2 162 53.1
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 2.1e-41 173.3 196 46.4
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 4.7e-41 172.2 188 44.1
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 5.2e-40 168.7 196 44.9
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 1.5e-39 167.2 157 49.7
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 1.3e-38 164.1 172 47.1
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 6.3e-38 161.8 219 39.7
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 1.1e-37 161.0 229 39.7
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 2.4e-37 159.8 182 45.6
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 9.1e-37 157.9 167 46.1
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 2.9e-35 152.9 142 51.4
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 5.0e-35 152.1 275 32.7
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 1.1e-34 151.0 142 50.7
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 2.1e-33 146.7 142 50.0
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 3.0e-32 142.9 129 49.6
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.7e-28 129.8 137 46.7
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 8.6e-27 124.8 151 46.4
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 4.9e-22 109.0 106 51.9
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 4.1e-21 105.9 103 50.5
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 2.7e-20 103.2 120 45.0
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 9.5e-18 94.7 91 50.5
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 2.8e-17 93.2 85 49.4
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 3.6e-17 92.8 82 53.7
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 2.1e-12 77.0 57 59.6
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 1.7e-11 73.9 79 45.6
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 1.7e-06 57.4 74 39.2
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 4.9e-06 55.8 68 39.7
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 8.4e-06 55.1 54 44.4


User provided reference genes

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