Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 7.1e-110 400.6 201 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 5.4e-49 198.4 188 52.7
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 4.6e-48 195.3 189 53.4
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.0e-47 194.1 188 52.7
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 1.7e-47 193.4 188 52.1
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 2.3e-47 193.0 188 51.6
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 5.0e-47 191.8 184 51.1
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 5.0e-47 191.8 188 51.6
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 6.6e-47 191.4 188 51.6
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 6.6e-47 191.4 188 52.1
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 8.6e-47 191.0 188 51.1
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 8.6e-47 191.0 188 52.7
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 8.6e-47 191.0 188 51.6
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 8.6e-47 191.0 188 51.6
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 1.1e-46 190.7 188 51.1
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 1.1e-46 190.7 188 51.1
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 1.5e-46 190.3 188 51.6
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 1.5e-46 190.3 188 51.1
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 1.9e-46 189.9 188 51.1
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 1.9e-46 189.9 188 50.5
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 1.9e-46 189.9 188 51.1
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 1.9e-46 189.9 188 51.1
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.9e-46 189.9 188 51.1
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.9e-46 189.9 188 52.1
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 1.9e-46 189.9 188 51.1
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 1.9e-46 189.9 188 51.1
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.5e-46 189.5 188 51.6
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 2.5e-46 189.5 188 51.6
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 2.5e-46 189.5 188 51.1
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 2.5e-46 189.5 188 51.1
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 2.5e-46 189.5 188 50.5
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 2.5e-46 189.5 188 51.1
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 2.5e-46 189.5 188 50.5
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 2.5e-46 189.5 188 50.5
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 2.5e-46 189.5 188 50.5
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 3.3e-46 189.1 188 51.1
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 3.3e-46 189.1 188 51.1
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 3.3e-46 189.1 188 50.5
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 3.3e-46 189.1 188 51.1
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 3.3e-46 189.1 188 51.6
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.3e-46 189.1 188 50.5
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 3.3e-46 189.1 188 51.1
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 4.3e-46 188.7 184 51.6
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 4.3e-46 188.7 188 51.1
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 4.3e-46 188.7 188 50.5
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 4.3e-46 188.7 188 50.5
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 4.3e-46 188.7 188 51.1
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 5.6e-46 188.3 188 51.1
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 5.6e-46 188.3 186 50.5
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 5.6e-46 188.3 188 52.1
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 5.6e-46 188.3 186 51.1
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 5.6e-46 188.3 188 50.0
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 5.6e-46 188.3 186 51.1
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 5.6e-46 188.3 188 50.5
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.6e-46 188.3 188 50.5
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 7.3e-46 188.0 188 51.6
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 7.3e-46 188.0 188 50.5
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 7.3e-46 188.0 188 50.5
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 7.3e-46 188.0 188 51.1
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 7.3e-46 188.0 188 51.1
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 9.5e-46 187.6 188 50.5
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 9.5e-46 187.6 188 51.6
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.2e-45 187.2 184 51.6
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 1.2e-45 187.2 188 51.6
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 1.2e-45 187.2 185 50.8
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 1.2e-45 187.2 185 50.8
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.6e-45 186.8 188 50.5
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 2.1e-45 186.4 185 50.8
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 2.1e-45 186.4 188 50.5
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 2.8e-45 186.0 188 50.0
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 2.8e-45 186.0 187 49.7
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 2.8e-45 186.0 185 50.3
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 2.8e-45 186.0 188 50.0
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 2.8e-45 186.0 188 50.0
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 3.6e-45 185.7 185 50.3
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 3.6e-45 185.7 188 50.0
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 4.7e-45 185.3 188 50.0
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 4.7e-45 185.3 188 50.0
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 4.7e-45 185.3 188 50.0
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 4.7e-45 185.3 188 50.0
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 4.7e-45 185.3 193 48.7
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 6.2e-45 184.9 182 51.1
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 6.2e-45 184.9 183 50.8
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 6.2e-45 184.9 182 51.6
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 6.2e-45 184.9 185 50.3
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 8.0e-45 184.5 176 52.3
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 1.1e-44 184.1 184 50.5
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 1.1e-44 184.1 185 50.3
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 1.4e-44 183.7 176 52.3
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.8e-44 183.3 176 52.3
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.8e-44 183.3 188 48.9
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.8e-44 183.3 188 48.9
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.8e-44 183.3 188 48.9
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 2.3e-44 183.0 176 51.7
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 2.3e-44 183.0 183 49.2
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 3.1e-44 182.6 176 51.7
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 3.1e-44 182.6 188 49.5
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 4.0e-44 182.2 188 48.9
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 4.0e-44 182.2 181 51.9
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 5.2e-44 181.8 181 50.8
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 1.2e-43 180.6 178 51.1
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 1.2e-43 180.6 181 50.8
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 1.5e-43 180.3 173 52.0
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 1.5e-43 180.3 173 52.0
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 2.0e-43 179.9 176 51.7
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 2.0e-43 179.9 176 51.7
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 2.0e-43 179.9 176 51.7
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 2.0e-43 179.9 181 50.8
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 1.4e-41 173.7 186 49.5
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 1.4e-41 173.7 169 50.9
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 7.0e-41 171.4 214 43.9
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 7.8e-40 167.9 211 42.7
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.0e-39 167.5 219 42.5
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.3e-39 167.2 190 48.9
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 6.6e-39 164.9 188 44.1
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.5e-38 162.9 192 46.9
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 5.6e-38 161.8 188 45.7
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 7.3e-38 161.4 166 51.8
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 9.5e-38 161.0 188 45.2
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 3.7e-34 149.1 140 50.7
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 4.9e-34 148.7 188 44.7
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 4.9e-34 148.7 188 44.7
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 1.9e-33 146.7 188 44.1
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.1e-33 145.6 188 43.6
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 5.4e-33 145.2 188 43.6
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 7.8e-32 141.4 145 50.3
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.3e-31 139.8 181 43.6
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.3e-31 139.8 181 43.6
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.1e-31 138.7 181 43.6
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 1.5e-30 137.1 127 51.2
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 8.1e-29 131.3 164 43.3
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 2.9e-26 122.9 145 46.2
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 3.2e-25 119.4 116 51.7
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.3e-23 114.0 144 45.1
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.9e-23 112.5 104 49.0
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.3e-22 109.4 109 46.8
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 3.5e-16 89.4 91 46.2
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 1.7e-15 87.0 83 45.8
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.2e-13 78.6 76 48.7
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.1e-12 76.3 75 44.0
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.9e-12 75.1 72 44.4
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.0e-11 73.6 66 62.1
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.4e-11 72.8 70 44.3
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.5e-11 72.4 66 60.6
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 6.7e-07 58.5 54 50.0


User provided reference genes

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