Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g145847 Chlamydomonas reinhardtii HOM05D001407 ORTHO05D143052 1.0e-143 514.6 601 100.0
Cre01.g007774 Chlamydomonas reinhardtii HOM05D001407 ORTHO05D001873 1.6e-08 65.5 53 52.8
Hma1.2p1_1037F.1_g250590 Hydrangea macrophylla HOM05D001407 ORTHO05D001314 2.4e-07 61.6 55 41.8
GSVIVG01025175001 Vitis vinifera HOM05D001407 ORTHO05D001314 2.4e-07 61.6 65 43.1
Migut.N01945 Erythranthe guttata HOM05D001407 ORTHO05D001314 5.2e-07 60.5 67 37.3
AT3G06140 Arabidopsis thaliana HOM05D001407 ORTHO05D001314 6.8e-07 60.1 69 39.1
A10p32740 Brassica napus HOM05D001407 ORTHO05D001314 6.8e-07 60.1 61 41.0
Cpa.g.sc16.23 Carica papaya HOM05D001407 ORTHO05D001314 6.8e-07 60.1 75 38.7
Sabra05G0036900 Salix brachista HOM05D001407 ORTHO05D001314 6.8e-07 60.1 64 39.1
BcaB02g07789 Brassica carinata HOM05D001407 ORTHO05D001314 8.9e-07 59.7 62 43.5
Medtr2g022210 Medicago truncatula HOM05D001407 ORTHO05D001314 8.9e-07 59.7 74 37.8
PGR004G1970 Punica granatum HOM05D001407 ORTHO05D001314 8.9e-07 59.7 68 39.7
Solyc01g098750.3 Solanum lycopersicum HOM05D001407 ORTHO05D001314 8.9e-07 59.7 49 44.9
Sopen01g042280 Solanum pennellii HOM05D001407 ORTHO05D001314 8.9e-07 59.7 49 44.9
PGSC0003DMG400028580 Solanum tuberosum HOM05D001407 ORTHO05D001314 8.9e-07 59.7 49 44.9
CSS0045628 Camellia sinensis var. sinensis HOM05D001407 ORTHO05D001314 1.2e-06 59.3 65 43.1
HanXRQChr10g0310411 Helianthus annuus HOM05D001407 ORTHO05D001314 1.2e-06 59.3 65 38.5
Sed0007959 Sechium edule HOM05D001407 ORTHO05D001314 1.2e-06 59.3 59 44.1
TPR.G30675 Trifolium pratense HOM05D001407 ORTHO05D001314 1.2e-06 59.3 68 39.7
AL3G16990 Arabidopsis lyrata HOM05D001407 ORTHO05D001314 1.5e-06 58.9 69 37.7
Duzib212G0691 Durio zibethinus HOM05D001407 ORTHO05D001314 1.5e-06 58.9 62 43.5
Glyma.15G104300 Glycine max HOM05D001407 ORTHO05D001314 1.5e-06 58.9 65 38.5
Potri.013G025400 Populus trichocarpa HOM05D001407 ORTHO05D001314 1.5e-06 58.9 67 41.8
ATR0626G068 Amborella trichopoda HOM05D001407 ORTHO05D001314 2.0e-06 58.5 67 37.3
C09p73570 Brassica napus HOM05D001407 ORTHO05D001314 2.0e-06 58.5 62 40.3
Carub.0003s0557 Capsella rubella HOM05D001407 ORTHO05D001314 2.0e-06 58.5 69 37.7
Cfa015584 Carpinus fangiana HOM05D001407 ORTHO05D001314 2.0e-06 58.5 65 38.5
PSO170G5627 Papaver somniferum HOM05D001407 ORTHO05D001314 2.0e-06 58.5 71 38.0
PSO210G6129 Papaver somniferum HOM05D001407 ORTHO05D001314 2.0e-06 58.5 62 43.5
PSO407G0118 Papaver somniferum HOM05D001407 ORTHO05D001314 2.0e-06 58.5 65 40.0
C05p61120 Brassica napus HOM05D001407 ORTHO05D001314 2.6e-06 58.2 69 37.7
BolC5t34769H Brassica oleracea HOM05D001407 ORTHO05D001314 2.6e-06 58.2 69 37.7
Nitab4.5_0001643g0080 Nicotiana tabacum HOM05D001407 ORTHO05D001314 2.6e-06 58.2 49 42.9
Sp3g05090 Schrenkiella parvula HOM05D001407 ORTHO05D001314 2.6e-06 58.2 69 37.7
HPP92_000386 Vanilla planifolia HOM05D001407 ORTHO05D001314 2.6e-06 58.2 66 37.9
arahy.Tifrunner.gnm1.ann1.53PAXP Arachis hypogaea HOM05D001407 ORTHO05D001314 3.4e-06 57.8 68 39.7
arahy.Tifrunner.gnm1.ann1.67YB7U Arachis hypogaea HOM05D001407 ORTHO05D001314 3.4e-06 57.8 68 39.7
A05p41860 Brassica napus HOM05D001407 ORTHO05D001314 3.4e-06 57.8 69 37.7
C06p21190 Brassica napus HOM05D001407 ORTHO05D001314 3.4e-06 57.8 68 41.2
BolC6t37303H Brassica oleracea HOM05D001407 ORTHO05D001314 3.4e-06 57.8 68 41.2
BraA05t22905Z Brassica rapa HOM05D001407 ORTHO05D001314 3.4e-06 57.8 69 37.7
Lsat_1_v5_gn_5_76001 Lactuca sativa HOM05D001407 ORTHO05D001314 3.4e-06 57.8 60 43.3
Nitab4.5_0000267g0030 Nicotiana tabacum HOM05D001407 ORTHO05D001314 3.4e-06 57.8 64 39.1
Nitab4.5_0002031g0110 Nicotiana tabacum HOM05D001407 ORTHO05D001314 3.4e-06 57.8 60 40.0
Pp3c9_24340 Physcomitrium patens HOM05D001407 ORTHO05D001314 3.4e-06 57.8 77 40.3
THA.LOC104816336 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 3.4e-06 57.8 63 41.3
AL6G12480 Arabidopsis lyrata HOM05D001407 ORTHO05D001314 4.4e-06 57.4 63 41.3
Ca_08842_v3 Cicer arietinum L. HOM05D001407 ORTHO05D001314 4.4e-06 57.4 71 39.4
Migut.N01943 Erythranthe guttata HOM05D001407 ORTHO05D001314 4.4e-06 57.4 74 37.8
Thhalv10021004m.g Eutrema salsugineum HOM05D001407 ORTHO05D001314 4.4e-06 57.4 69 37.7
Medtr4g117250 Medicago truncatula HOM05D001407 ORTHO05D001314 4.4e-06 57.4 49 42.9
Psat3g043520 Pisum sativum HOM05D001407 ORTHO05D001314 4.4e-06 57.4 69 37.7
Potri.005G036400 Populus trichocarpa HOM05D001407 ORTHO05D001314 4.4e-06 57.4 64 39.1
PRCOL_00006847 Prasinoderma coloniale HOM05D001407 ORTHO05D333301 4.4e-06 57.4 70 40.0
TWI79G1057 Tripterygium wilfordii HOM05D001407 ORTHO05D001314 4.4e-06 57.4 69 37.7
Aqoxy2G03272 Aquilegia oxysepala HOM05D001407 ORTHO05D001314 5.8e-06 57.0 59 42.4
BcaC05g29483 Brassica carinata HOM05D001407 ORTHO05D001314 5.8e-06 57.0 64 39.1
BcaC05g29699 Brassica carinata HOM05D001407 ORTHO05D001314 5.8e-06 57.0 64 39.1
A05p39340 Brassica napus HOM05D001407 ORTHO05D001314 5.8e-06 57.0 64 39.1
C05p58350 Brassica napus HOM05D001407 ORTHO05D001314 5.8e-06 57.0 64 39.1
BraA05t22716Z Brassica rapa HOM05D001407 ORTHO05D001314 5.8e-06 57.0 64 39.1
CARHR084210 Cardamine hirsuta HOM05D001407 ORTHO05D001314 5.8e-06 57.0 64 39.1
MBI10_g20268_MAGBIO Magnolia biondii HOM05D002547 ORTHO05D002649 5.8e-06 57.0 58 41.4
MBI17_g34454_MAGBIO Magnolia biondii HOM05D001407 ORTHO05D001314 5.8e-06 57.0 61 42.6
Manes.03G184500 Manihot esculenta HOM05D001407 ORTHO05D001314 5.8e-06 57.0 49 42.9
Nn1g02167 Nelumbo nucifera HOM05D001407 ORTHO05D001314 5.8e-06 57.0 68 39.7
RcHm_v2.0_Chr3g0469461 Rosa chinensis HOM05D001407 ORTHO05D001314 5.8e-06 57.0 65 41.5
Sp3g08110 Schrenkiella parvula HOM05D001407 ORTHO05D001314 5.8e-06 57.0 64 39.1
Thecc.04G221800 Theobroma cacao HOM05D001407 ORTHO05D001314 5.8e-06 57.0 62 40.3
TWI73G0010 Tripterygium wilfordii HOM05D001407 ORTHO05D001314 5.8e-06 57.0 67 38.8
TAR365G0127 Trochodendron aralioides HOM05D001407 ORTHO05D001314 5.8e-06 57.0 65 38.5
Actinidia40191 Actinidia chinensis HOM05D001407 ORTHO05D001314 7.6e-06 56.6 59 40.7
Aa31LG10G8570 Aethionema arabicum HOM05D001407 ORTHO05D001314 7.6e-06 56.6 66 40.9
Aqoxy1G01250 Aquilegia oxysepala HOM05D001407 ORTHO05D001314 7.6e-06 56.6 65 41.5
AT3G09770 Arabidopsis thaliana HOM05D001407 ORTHO05D001314 7.6e-06 56.6 80 33.8
BcaC05g30052 Brassica carinata HOM05D001407 ORTHO05D001314 7.6e-06 56.6 69 36.2
BraA02t04748Z Brassica rapa HOM05D001407 ORTHO05D001314 7.6e-06 56.6 49 44.9
Cc06_g03860 Coffea canephora HOM05D001407 ORTHO05D001314 7.6e-06 56.6 70 40.0
Cc10_g11660 Coffea canephora HOM05D001407 ORTHO05D001314 7.6e-06 56.6 70 40.0
COL.COLO4_21649 Corchorus olitorius HOM05D001407 ORTHO05D001314 7.6e-06 56.6 68 36.8
CsaV3_3G013720 Cucumis sativus L. HOM05D001407 ORTHO05D001314 7.6e-06 56.6 68 38.2
DCAR_030599 Daucus carota HOM05D001407 ORTHO05D001314 7.6e-06 56.6 68 41.2
Dinv40264 Davidia involucrata HOM05D001407 ORTHO05D001314 7.6e-06 56.6 56 37.5
Gohir.A09G054500 Gossypium hirsutum HOM05D001407 ORTHO05D001314 7.6e-06 56.6 68 36.8
Gohir.D09G053500 Gossypium hirsutum HOM05D001407 ORTHO05D001314 7.6e-06 56.6 68 36.8
Gorai.006G053800 Gossypium raimondii HOM05D001407 ORTHO05D001314 7.6e-06 56.6 68 36.8
HanXRQChr07g0195571 Helianthus annuus HOM05D001407 ORTHO05D001314 7.6e-06 56.6 70 40.0
Lj4g0020354 Lotus japonicus HOM05D001407 ORTHO05D001314 7.6e-06 56.6 63 41.3
Medtr7g101150 Medicago truncatula HOM05D001407 ORTHO05D001314 7.6e-06 56.6 71 36.6
Oeu043375.1 Olea europaea HOM05D001407 ORTHO05D001314 7.6e-06 56.6 49 42.9
Psat1g183480 Pisum sativum HOM05D001407 ORTHO05D001314 7.6e-06 56.6 74 36.5
Sabra13G0026600 Salix brachista HOM05D001407 ORTHO05D001314 7.6e-06 56.6 64 37.5
TPR.G18280 Trifolium pratense HOM05D001407 ORTHO05D001314 7.6e-06 56.6 68 38.2
AT5G03200 Arabidopsis thaliana HOM05D001407 ORTHO05D001314 9.9e-06 56.2 63 41.3
Ciclev10005143m.g Citrus clementina HOM05D001407 ORTHO05D001314 9.9e-06 56.2 68 38.2
Cc00_g13320 Coffea canephora HOM05D001407 ORTHO05D001314 9.9e-06 56.2 49 42.9
Glyma.07G257200 Glycine max HOM05D001407 ORTHO05D001314 9.9e-06 56.2 68 39.7
Lalb_Chr25g0289141 Lupinus albus HOM05D001407 ORTHO05D001314 9.9e-06 56.2 71 38.0
MBI07_g16925_MAGBIO Magnolia biondii HOM05D002547 ORTHO05D002649 9.9e-06 56.2 59 39.0
MCO04G229 Micromonas commoda HOM05D001407 ORTHO05D001314 9.9e-06 56.2 77 39.0
PSO384G4948 Papaver somniferum HOM05D001407 ORTHO05D001314 9.9e-06 56.2 65 38.5
Psat6g068040 Pisum sativum HOM05D001407 ORTHO05D001314 9.9e-06 56.2 68 39.7
SMO239G0121 Selaginella moellendorffii HOM05D001407 ORTHO05D001314 9.9e-06 56.2 65 38.5
Solyc10g086080.2 Solanum lycopersicum HOM05D001407 ORTHO05D001314 9.9e-06 56.2 70 41.4
Sopen10g035450 Solanum pennellii HOM05D001407 ORTHO05D001314 9.9e-06 56.2 70 41.4
vmacro20036 Vaccinium macrocarpon HOM05D001407 ORTHO05D001314 9.9e-06 56.2 65 41.5


User provided reference genes

Program Settings