Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 3.5e-103 378.3 186 100.0
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 5.0e-65 251.5 172 67.4
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 6.5e-65 251.1 181 64.1
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 8.5e-65 250.8 172 68.0
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 7.2e-64 247.7 172 66.9
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 7.2e-64 247.7 184 64.1
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 7.2e-64 247.7 184 64.1
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 2.7e-63 245.7 172 65.7
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.7e-63 245.7 172 64.5
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.7e-63 245.7 172 64.5
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.7e-63 245.7 172 64.5
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 4.6e-63 245.0 172 65.1
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 4.6e-63 245.0 173 65.3
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 6.1e-63 244.6 184 61.4
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 7.9e-63 244.2 185 62.2
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 7.9e-63 244.2 185 62.2
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 7.9e-63 244.2 185 62.2
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 1.0e-62 243.8 185 62.2
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.0e-62 243.8 185 62.2
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 1.0e-62 243.8 185 62.2
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 1.0e-62 243.8 185 62.2
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 1.0e-62 243.8 173 64.7
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 1.4e-62 243.4 172 65.1
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.4e-62 243.4 185 62.2
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.4e-62 243.4 185 61.6
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.4e-62 243.4 173 64.2
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.4e-62 243.4 172 64.5
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.4e-62 243.4 172 65.7
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 1.4e-62 243.4 172 64.0
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 1.8e-62 243.0 173 64.2
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 1.8e-62 243.0 173 64.2
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.8e-62 243.0 185 61.6
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 1.8e-62 243.0 183 62.8
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 2.3e-62 242.7 173 64.2
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.3e-62 242.7 185 61.6
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.3e-62 242.7 185 61.6
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 3.0e-62 242.3 172 64.0
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 3.0e-62 242.3 172 66.3
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 3.0e-62 242.3 185 60.5
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 3.0e-62 242.3 173 64.2
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 3.9e-62 241.9 173 64.2
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 3.9e-62 241.9 185 60.5
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 3.9e-62 241.9 185 61.1
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 3.9e-62 241.9 172 64.0
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 3.9e-62 241.9 173 63.6
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 3.9e-62 241.9 173 63.6
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 3.9e-62 241.9 172 64.0
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 5.1e-62 241.5 172 64.0
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 5.1e-62 241.5 172 63.4
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 5.1e-62 241.5 172 62.8
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 5.1e-62 241.5 185 61.1
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 5.1e-62 241.5 172 64.5
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 5.1e-62 241.5 185 61.1
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 5.1e-62 241.5 185 61.1
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 6.7e-62 241.1 185 61.1
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 6.7e-62 241.1 173 63.6
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 6.7e-62 241.1 172 64.5
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 8.8e-62 240.7 173 64.2
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 1.1e-61 240.4 172 64.0
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.1e-61 240.4 173 64.2
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 1.1e-61 240.4 185 60.5
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 1.5e-61 240.0 185 60.0
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 1.5e-61 240.0 173 64.2
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 2.0e-61 239.6 185 60.0
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.0e-61 239.6 173 63.6
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 2.0e-61 239.6 187 61.0
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 2.0e-61 239.6 187 61.0
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 2.0e-61 239.6 173 63.0
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 2.5e-61 239.2 172 63.4
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 2.5e-61 239.2 172 64.0
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 2.5e-61 239.2 172 64.0
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 2.5e-61 239.2 173 63.0
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 2.5e-61 239.2 172 63.4
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 3.3e-61 238.8 173 62.4
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 4.3e-61 238.4 173 63.0
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 4.3e-61 238.4 184 60.3
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 4.3e-61 238.4 173 63.0
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 4.3e-61 238.4 173 63.0
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 4.3e-61 238.4 173 63.0
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 4.3e-61 238.4 171 62.6
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 5.7e-61 238.0 185 60.0
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 5.7e-61 238.0 172 63.4
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 5.7e-61 238.0 173 60.7
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 5.7e-61 238.0 173 63.0
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 5.7e-61 238.0 172 62.2
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 5.7e-61 238.0 173 61.3
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 5.7e-61 238.0 185 60.5
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 7.4e-61 237.7 171 63.7
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 7.4e-61 237.7 172 63.4
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 9.7e-61 237.3 185 60.0
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 9.7e-61 237.3 173 63.0
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 9.7e-61 237.3 185 60.5
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 1.3e-60 236.9 185 59.5
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 1.3e-60 236.9 171 63.2
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 1.3e-60 236.9 172 62.8
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 1.3e-60 236.9 185 60.0
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 1.3e-60 236.9 173 61.3
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.3e-60 236.9 173 62.4
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 1.7e-60 236.5 185 60.0
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 1.7e-60 236.5 173 61.3
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.2e-60 236.1 172 64.0
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.2e-60 236.1 185 59.5
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.8e-60 235.7 185 60.5
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.8e-60 235.7 185 60.0
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 2.8e-60 235.7 185 59.5
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 2.8e-60 235.7 183 60.1
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 3.7e-60 235.3 185 59.5
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 3.7e-60 235.3 185 59.5
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 3.7e-60 235.3 185 59.5
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 3.7e-60 235.3 185 59.5
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 3.7e-60 235.3 198 58.1
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 4.8e-60 235.0 173 60.7
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 6.3e-60 234.6 185 58.9
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 1.1e-59 233.8 173 60.1
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 1.1e-59 233.8 168 64.9
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 1.1e-59 233.8 185 60.0
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 1.4e-59 233.4 201 56.7
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 2.4e-59 232.6 199 57.3
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 4.1e-59 231.9 182 58.8
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 4.1e-59 231.9 185 57.8
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 6.9e-59 231.1 185 60.0
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 1.2e-58 230.3 172 64.0
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 2.0e-58 229.6 204 55.4
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 7.7e-58 227.6 167 60.5
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 2.2e-57 226.1 169 60.9
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 6.5e-57 224.6 157 64.3
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 1.4e-56 223.4 204 53.4
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.4e-56 223.4 152 67.1
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 9.4e-56 220.7 194 54.1
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 1.6e-55 219.9 195 54.9
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 3.6e-55 218.8 161 64.0
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 1.4e-54 216.9 239 47.7
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 1.3e-52 210.3 168 57.1
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 4.8e-52 208.4 175 57.7
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 6.3e-52 208.0 186 55.4
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 3.5e-50 202.2 185 56.2
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.3e-49 200.3 153 60.1
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 1.7e-49 199.9 135 67.4
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 4.2e-48 195.3 150 60.0
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.6e-47 193.4 131 67.9
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.7e-47 192.6 132 67.4
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 2.7e-47 192.6 164 54.3
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.2e-46 188.3 150 58.7
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.3e-44 183.7 150 58.0
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.1e-43 180.6 158 55.7
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 1.8e-43 179.9 181 50.3
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.4e-40 167.5 118 62.7
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 6.7e-38 161.4 185 46.5
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 5.7e-37 158.3 122 59.8
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 3.5e-34 149.1 185 42.7
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 9.4e-32 141.0 98 67.3
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.4e-30 137.1 103 62.1
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.4e-30 137.1 98 64.3
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 4.0e-30 135.6 139 48.2
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.7e-28 130.2 104 59.6
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.1e-27 127.5 98 59.2
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.0e-25 120.9 179 38.5
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 6.1e-23 111.7 70 70.0
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 3.1e-19 99.4 70 61.4
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 1.1e-16 90.9 135 38.5
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.5e-08 63.2 50 60.0
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 9.5e-08 61.2 38 68.4
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 6.2e-07 58.5 47 59.6
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.3e-06 56.6 77 39.0


User provided reference genes

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