Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g145267 Chlamydomonas reinhardtii HOM05D007497 ORTHO05D022249 6.8e-298 1026.5 514 100.0
Cfa026587 Carpinus fangiana HOM05D007497 ORTHO05D022249 5.6e-74 282.7 463 37.6
PRCOL_00006301 Prasinoderma coloniale HOM05D007497 ORTHO05D022249 1.1e-69 268.5 373 42.1
PRCOL_00001487 Prasinoderma coloniale HOM05D007497 ORTHO05D022249 1.3e-67 261.5 458 37.6
SEGI_36642 Sequoiadendron giganteum HOM05D007497 ORTHO05D022249 2.8e-57 227.3 457 31.7
Pp3c24_8280 Physcomitrium patens HOM05D007497 ORTHO05D022249 1.1e-42 178.7 455 28.6
Pp3s30_430 Physcomitrium patens HOM05D007497 ORTHO05D009706 3.9e-27 127.1 385 26.8
SMO164G0003 Selaginella moellendorffii HOM05D007497 ORTHO05D009706 8.7e-27 125.9 412 27.2
Lj1A600T68 Lonicera japonica HOM05D007497 ORTHO05D009706 2.5e-26 124.4 386 26.9
Manes.13G007600 Manihot esculenta HOM05D007497 ORTHO05D009706 1.3e-25 122.1 394 27.2
Glyma.20G249400 Glycine max HOM05D007497 ORTHO05D009706 2.1e-25 121.3 386 26.7
Lsat_1_v5_gn_8_147300 Lactuca sativa HOM05D007497 ORTHO05D009706 3.6e-25 120.6 392 26.0
HanXRQChr12g0362231 Helianthus annuus HOM05D007497 ORTHO05D009706 1.1e-24 119.0 388 26.3
Hund06133 Selenicereus undatus HOM05D007497 ORTHO05D009706 1.1e-24 119.0 392 25.3
Eucgr.H04604 Eucalyptus grandis HOM05D007497 ORTHO05D009706 1.8e-24 118.2 453 25.6
ATR0582G029 Amborella trichopoda HOM05D007497 ORTHO05D009706 2.4e-24 117.9 429 25.9
AagrBONN_evm.TU.Sc2ySwM_117.3575 Anthoceros agrestis HOM05D007497 ORTHO05D009706 2.4e-24 117.9 411 27.3
ECA233G4426 Erigeron canadensis HOM05D007497 ORTHO05D009706 2.4e-24 117.9 394 26.4
MBI07_g24745_MAGBIO Magnolia biondii HOM05D007497 ORTHO05D009706 2.4e-24 117.9 392 26.3
CDE02G2130 Ceratophyllum demersum HOM05D007497 ORTHO05D009706 5.3e-24 116.7 403 25.1
Phvul.007G001000 Phaseolus vulgaris HOM05D007497 ORTHO05D009706 5.3e-24 116.7 393 27.0
CiPaw.05G105800 Carya illinoinensis HOM05D007497 ORTHO05D009706 6.9e-24 116.3 394 25.9
HPP92_024455 Vanilla planifolia HOM05D007497 ORTHO05D009706 6.9e-24 116.3 376 27.9
VMungo0720G2254 Vigna mungo HOM05D007497 ORTHO05D009706 6.9e-24 116.3 393 27.2
FvH4_4g23250 Fragaria vesca HOM05D007497 ORTHO05D009706 9.0e-24 115.9 392 26.0
RcHm_v2.0_Chr4g0429611 Rosa chinensis HOM05D007497 ORTHO05D009706 9.0e-24 115.9 389 26.5
AUR62005664 Chenopodium quinoa HOM05D007497 ORTHO05D009706 3.4e-23 114.0 395 25.6
Atru.chr11.2380 Acer truncatum HOM05D007497 ORTHO05D009706 4.5e-23 113.6 387 26.4
CSS0041912 Camellia sinensis var. sinensis HOM05D007497 ORTHO05D009706 9.9e-23 112.5 395 25.3
MD16G1124200 Malus domestica HOM05D007497 ORTHO05D009706 9.9e-23 112.5 417 26.1
Thecc.02G199900 Theobroma cacao HOM05D007497 ORTHO05D009706 1.3e-22 112.1 385 26.0
PGR119G1254 Punica granatum HOM05D007497 ORTHO05D009706 1.7e-22 111.7 386 25.9
Zm00001eb133110 Zea mays HOM05D007497 ORTHO05D009706 1.7e-22 111.7 392 26.8
MSTRG.8029 Avicennia marina HOM05D007497 ORTHO05D009706 2.2e-22 111.3 388 25.3
SEGI_22503 Sequoiadendron giganteum HOM05D007497 ORTHO05D009706 2.9e-22 110.9 399 25.1
DCAR_024649 Daucus carota HOM05D007497 ORTHO05D009706 6.4e-22 109.8 391 25.8
Migut.K01014 Erythranthe guttata HOM05D007497 ORTHO05D009706 1.1e-21 109.0 390 25.4
Pp3c11_11180 Physcomitrium patens HOM05D007497 ORTHO05D009706 1.4e-21 108.6 388 25.5
Duzib052G0992 Durio zibethinus HOM05D007497 ORTHO05D009706 1.9e-21 108.2 380 25.5
Gohir.D01G020400 Gossypium hirsutum HOM05D007497 ORTHO05D009706 1.9e-21 108.2 387 24.8
Prupe.1G221400 Prunus persica HOM05D007497 ORTHO05D009706 1.9e-21 108.2 388 26.8
CsaV3_4G002920 Cucumis sativus L. HOM05D007497 ORTHO05D009706 2.4e-21 107.8 392 25.5
arahy.Tifrunner.gnm1.ann1.USIX8K Arachis hypogaea HOM05D007497 ORTHO05D009706 3.2e-21 107.5 390 25.9
AUR62028889 Chenopodium quinoa HOM05D007497 ORTHO05D009706 3.2e-21 107.5 413 24.9
Cfa009399 Carpinus fangiana HOM05D007497 ORTHO05D009706 4.2e-21 107.1 389 25.7
TAR622G0177 Trochodendron aralioides HOM05D007497 ORTHO05D009706 4.2e-21 107.1 396 25.3
Gorai.002G022900 Gossypium raimondii HOM05D007497 ORTHO05D009706 5.5e-21 106.7 387 24.8
Aqoxy5G03252 Aquilegia oxysepala HOM05D007497 ORTHO05D009706 9.3e-21 105.9 393 24.9
Ciclev10031387m.g Citrus clementina HOM05D007497 ORTHO05D009706 2.1e-20 104.8 382 25.1
Hma1.2p1_0275F.1_g110530 Hydrangea macrophylla HOM05D007497 ORTHO05D009706 2.1e-20 104.8 383 25.3
Gohir.A01G021900 Gossypium hirsutum HOM05D007497 ORTHO05D009706 3.5e-20 104.0 380 24.7
GSVIVG01000925001 Vitis vinifera HOM05D007497 ORTHO05D009706 3.5e-20 104.0 409 24.0
FAN12G1328 Fragaria x ananassa HOM05D007497 ORTHO05D009706 4.6e-20 103.6 415 24.8
Nn4g22236 Nelumbo nucifera HOM05D007497 ORTHO05D009706 4.6e-20 103.6 403 25.3
Sed0000705 Sechium edule HOM05D007497 ORTHO05D009706 7.9e-20 102.8 392 25.3
Mapoly0028s0122 Marchantia polymorpha HOM05D007497 ORTHO05D009706 1.3e-19 102.1 349 26.1
arahy.Tifrunner.gnm1.ann1.03F5C5 Arachis hypogaea HOM05D007497 ORTHO05D009706 2.3e-19 101.3 345 26.4
Sc04g0010370 Simmondsia chinensis HOM05D007497 ORTHO05D009706 3.9e-19 100.5 386 24.4
FAN17G0169 Fragaria x ananassa HOM05D007497 ORTHO05D009706 5.1e-19 100.1 418 23.9
FAN07G1017 Fragaria x ananassa HOM05D007497 ORTHO05D009706 8.7e-19 99.4 415 23.6
Peaxi162Scf00255g00215 Petunia axillaris HOM05D007497 ORTHO05D009706 4.3e-18 97.1 395 24.3
Dinv11708 Davidia involucrata HOM05D007497 ORTHO05D009706 5.6e-18 96.7 304 28.0
Oeu058905.2 Olea europaea HOM05D007497 ORTHO05D009706 7.4e-18 96.3 438 22.8
Sabra01G0043200 Salix brachista HOM05D007497 ORTHO05D009706 2.1e-17 94.7 326 26.7
Actinidia25110 Actinidia chinensis HOM05D007497 ORTHO05D009706 4.8e-17 93.6 390 24.4
Nitab4.5_0004878g0020 Nicotiana tabacum HOM05D007497 ORTHO05D009706 4.0e-16 90.5 393 24.7
Nitab4.5_0001771g0110 Nicotiana tabacum HOM05D007497 ORTHO05D009706 2.0e-15 88.2 394 24.9
vmacro01041 Vaccinium macrocarpon HOM05D007497 ORTHO05D009706 2.9e-14 84.3 339 24.2
Solyc01g009940.1 Solanum lycopersicum HOM05D007497 ORTHO05D009706 2.5e-10 71.2 267 25.8


User provided reference genes

Program Settings