Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre03.g144184 Chlamydomonas reinhardtii HOM05D007229 ORTHO05D009131 8.3e-83 310.5 171 100.0
AL5G37620 Arabidopsis lyrata HOM05D007229 ORTHO05D009131 1.0e-08 64.3 56 57.1
Carub.0005s2307 Capsella rubella HOM05D007229 ORTHO05D009131 2.3e-08 63.2 65 50.8
Zm00001eb149430 Zea mays HOM05D007229 ORTHO05D009131 2.3e-08 63.2 55 58.2
AT3G56290 Arabidopsis thaliana HOM05D007229 ORTHO05D009131 5.1e-08 62.0 66 50.0
BcaC08g44777 Brassica carinata HOM05D007229 ORTHO05D009131 8.7e-08 61.2 65 49.2
A07p22880 Brassica napus HOM05D007229 ORTHO05D009131 8.7e-08 61.2 65 49.2
C06p23470 Brassica napus HOM05D007229 ORTHO05D009131 8.7e-08 61.2 65 49.2
BraA07t29954Z Brassica rapa HOM05D007229 ORTHO05D009131 8.7e-08 61.2 65 49.2
CARHR166450 Cardamine hirsuta HOM05D007229 ORTHO05D009131 8.7e-08 61.2 65 49.2
Thhalv10006268m.g Eutrema salsugineum HOM05D007229 ORTHO05D009131 8.7e-08 61.2 56 55.4
Manes.10G004800 Manihot esculenta HOM05D007229 ORTHO05D009131 8.7e-08 61.2 67 49.3
Sp5g06210 Schrenkiella parvula HOM05D007229 ORTHO05D009131 8.7e-08 61.2 65 49.2
BcaB01g00004 Brassica carinata HOM05D007229 ORTHO05D009131 1.1e-07 60.8 65 49.2
BcaB01g00005 Brassica carinata HOM05D007229 ORTHO05D009131 1.1e-07 60.8 65 49.2
BcaC07g39946 Brassica carinata HOM05D007229 ORTHO05D009131 1.1e-07 60.8 65 49.2
A09p49260 Brassica napus HOM05D007229 ORTHO05D009131 1.1e-07 60.8 65 49.2
C08p31620 Brassica napus HOM05D007229 ORTHO05D009131 1.1e-07 60.8 65 49.2
BolC8t50783H Brassica oleracea HOM05D007229 ORTHO05D009131 1.1e-07 60.8 65 49.2
BraA09t40379Z Brassica rapa HOM05D007229 ORTHO05D009131 1.1e-07 60.8 65 49.2
Cc02_g05510 Coffea canephora HOM05D007229 ORTHO05D009131 1.1e-07 60.8 66 48.5
Os01g0823600 Oryza sativa ssp. japonica HOM05D007229 ORTHO05D009131 1.1e-07 60.8 55 54.5
Potri.019G056400 Populus trichocarpa HOM05D007229 ORTHO05D009131 1.1e-07 60.8 67 49.3
THA.LOC104824356 Tarenaya hassleriana HOM05D007229 ORTHO05D009131 1.1e-07 60.8 66 50.0
Sabra19G0072100 Salix brachista HOM05D007229 ORTHO05D009131 1.5e-07 60.5 60 53.3
SabraUnG0004000 Salix brachista HOM05D007229 ORTHO05D009131 1.5e-07 60.5 60 53.3
BolC6t37520H Brassica oleracea HOM05D007229 ORTHO05D009131 1.9e-07 60.1 65 49.2
AagrBONN_evm.TU.Sc2ySwM_344.3614 Anthoceros agrestis HOM05D007229 ORTHO05D009131 2.5e-07 59.7 85 44.7
Manes.07G139500 Manihot esculenta HOM05D007229 ORTHO05D009131 2.5e-07 59.7 67 49.3
Oeu020108.1 Olea europaea HOM05D007229 ORTHO05D009131 2.5e-07 59.7 67 50.7
Aa31LG10G11190 Aethionema arabicum HOM05D007229 ORTHO05D009131 4.3e-07 58.9 56 51.8
CiPaw.01G306000 Carya illinoinensis HOM05D007229 ORTHO05D009131 5.7e-07 58.5 61 49.2
Sopen06g015630 Solanum pennellii HOM05D007229 ORTHO05D009131 9.7e-07 57.8 85 40.0
Glyma.06G143700 Glycine max HOM05D007229 ORTHO05D009131 1.3e-06 57.4 67 46.3
Gohir.D04G011900 Gossypium hirsutum HOM05D007229 ORTHO05D009131 1.3e-06 57.4 67 46.3
Gorai.012G014100 Gossypium raimondii HOM05D007229 ORTHO05D009131 1.3e-06 57.4 67 46.3
Peaxi162Scf00739g00125 Petunia axillaris HOM05D000154 ORTHO05D000092 1.3e-06 57.4 85 50.6
Thecc.10G183800 Theobroma cacao HOM05D007229 ORTHO05D009131 1.3e-06 57.4 67 46.3
ClCG07G004950 Citrullus lanatus HOM05D007229 ORTHO05D009131 1.6e-06 57.0 60 46.7
MELO3C020131.2 Cucumis melo HOM05D007229 ORTHO05D009131 1.6e-06 57.0 60 46.7
Phvul.009G142501 Phaseolus vulgaris HOM05D007229 ORTHO05D009131 1.6e-06 57.0 67 46.3
Solyc06g050170.4 Solanum lycopersicum HOM05D000154 ORTHO05D000092 1.6e-06 57.0 67 46.3
HPP92_017919 Vanilla planifolia HOM05D007229 ORTHO05D009131 1.6e-06 57.0 60 50.0
VMungo1309G1820 Vigna mungo HOM05D007229 ORTHO05D009131 1.6e-06 57.0 67 46.3
CAN.G55.3 Capsicum annuum HOM05D007229 ORTHO05D009131 2.2e-06 56.6 60 50.0
Duzib114G0482 Durio zibethinus HOM05D007229 ORTHO05D009131 2.2e-06 56.6 67 44.8
TWI53G0143 Tripterygium wilfordii HOM05D007229 ORTHO05D009131 2.2e-06 56.6 67 46.3
Haze_17350 Corylus avellana HOM05D000154 ORTHO05D000092 2.8e-06 56.2 67 46.3
Glyma.04G221700 Glycine max HOM05D007229 ORTHO05D009131 2.8e-06 56.2 67 44.8
CDE12G0285 Ceratophyllum demersum HOM05D007229 ORTHO05D009131 3.7e-06 55.8 72 44.4
FvH4_7g25840 Fragaria vesca HOM05D007229 ORTHO05D009131 3.7e-06 55.8 85 43.5
FAN06G3440 Fragaria x ananassa HOM05D007229 ORTHO05D009131 3.7e-06 55.8 85 43.5
Gohir.A05G403900 Gossypium hirsutum HOM05D007229 ORTHO05D009131 3.7e-06 55.8 67 44.8
MD07G1232800 Malus domestica HOM05D007229 ORTHO05D009131 3.7e-06 55.8 63 47.6
PGSC0003DMG400024310 Solanum tuberosum HOM05D007229 ORTHO05D009131 3.7e-06 55.8 122 32.0
ATR0681G125 Amborella trichopoda HOM05D007229 ORTHO05D009131 4.8e-06 55.5 67 43.3
arahy.Tifrunner.gnm1.ann1.B9ILCP Arachis hypogaea HOM05D007229 ORTHO05D009131 4.8e-06 55.5 67 44.8
arahy.Tifrunner.gnm1.ann1.I1HNZH Arachis hypogaea HOM05D007229 ORTHO05D009131 4.8e-06 55.5 67 44.8
PSO339G1638 Papaver somniferum HOM05D007229 ORTHO05D009131 4.8e-06 55.5 67 44.8
PSO384G2154 Papaver somniferum HOM05D007229 ORTHO05D009131 4.8e-06 55.5 67 44.8
Sed0026302 Sechium edule HOM05D007229 ORTHO05D009131 4.8e-06 55.5 60 45.0
CsaV3_5G010830 Cucumis sativus L. HOM05D007229 ORTHO05D009131 6.3e-06 55.1 60 45.0
Dinv26059 Davidia involucrata HOM05D007229 ORTHO05D009131 6.3e-06 55.1 55 56.4
Migut.F00594 Erythranthe guttata HOM05D007229 ORTHO05D009131 6.3e-06 55.1 55 50.9
Lalb_Chr11g0067841 Lupinus albus HOM05D007229 ORTHO05D009131 6.3e-06 55.1 67 44.8
RcHm_v2.0_Chr1g0372111 Rosa chinensis HOM05D007229 ORTHO05D009131 6.3e-06 55.1 85 48.2
SGA_v2.0_scaffold60G20901 Striga asiatica HOM05D007229 ORTHO05D009131 6.3e-06 55.1 67 49.3
COL.COLO4_19452 Corchorus olitorius HOM05D007229 ORTHO05D009131 8.2e-06 54.7 67 43.3
Lj1g0022940 Lotus japonicus HOM05D007229 ORTHO05D009131 8.2e-06 54.7 67 44.8
Mapoly0032s0114 Marchantia polymorpha HOM05D007229 ORTHO05D009131 8.2e-06 54.7 56 50.0
SalBow3G2298 Salvia bowleyana HOM05D007229 ORTHO05D009131 8.2e-06 54.7 67 47.8
TAR369G0442 Trochodendron aralioides HOM05D007229 ORTHO05D009131 8.2e-06 54.7 67 43.3


User provided reference genes

Program Settings