Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 2.5e-124 449.1 285 100.0
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 5.0e-16 89.4 248 37.1
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 1.2e-12 78.2 258 31.8
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 2.6e-12 77.0 153 41.2
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 9.7e-12 75.1 252 34.1
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 3.7e-11 73.2 232 34.1
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 4.8e-11 72.8 139 41.0
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 1.1e-10 71.6 251 32.3
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 3.1e-10 70.1 143 39.2
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 3.1e-10 70.1 258 31.0
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 4.1e-10 69.7 269 33.5
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 5.3e-10 69.3 253 30.8
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 7.0e-10 68.9 237 32.5
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 7.0e-10 68.9 148 37.2
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 7.0e-10 68.9 147 38.8
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 1.2e-09 68.2 256 30.1
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 1.2e-09 68.2 255 33.3
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 1.2e-09 68.2 139 39.6
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 2.0e-09 67.4 141 38.3
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 4.5e-09 66.2 141 38.3
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 4.5e-09 66.2 145 35.2
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 5.9e-09 65.9 255 31.4
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 7.7e-09 65.5 251 31.5
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 1.0e-08 65.1 255 31.8
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 1.3e-08 64.7 245 30.2
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 1.3e-08 64.7 258 29.1
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 1.3e-08 64.7 239 30.1
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 1.3e-08 64.7 141 38.3
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 1.7e-08 64.3 250 29.6
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 1.7e-08 64.3 252 31.7
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 1.7e-08 64.3 252 31.7
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 1.7e-08 64.3 144 39.6
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 2.2e-08 63.9 260 28.8
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 2.2e-08 63.9 253 31.2
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 2.2e-08 63.9 84 46.4
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 2.9e-08 63.5 260 28.8
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 2.9e-08 63.5 257 30.7
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 2.9e-08 63.5 252 30.6
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 3.8e-08 63.2 258 28.7
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 3.8e-08 63.2 264 30.3
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 3.8e-08 63.2 264 30.3
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 5.0e-08 62.8 253 30.0
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 5.0e-08 62.8 236 31.4
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 5.0e-08 62.8 238 32.4
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 6.5e-08 62.4 139 35.3
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 6.5e-08 62.4 241 32.4
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 6.5e-08 62.4 241 32.4
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 8.5e-08 62.0 241 32.0
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 8.5e-08 62.0 261 30.7
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 1.1e-07 61.6 239 31.0
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 1.1e-07 61.6 258 28.3
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 1.5e-07 61.2 253 30.4
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 1.5e-07 61.2 241 32.4
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 1.9e-07 60.8 238 31.5
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 2.5e-07 60.5 139 34.5
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 2.5e-07 60.5 252 31.0
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 2.5e-07 60.5 251 30.3
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 3.2e-07 60.1 250 30.0
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 3.2e-07 60.1 249 29.7
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 3.2e-07 60.1 235 31.5
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 3.2e-07 60.1 250 30.8
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 4.2e-07 59.7 232 31.9
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 4.2e-07 59.7 261 31.4
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 4.2e-07 59.7 266 30.1
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 5.5e-07 59.3 255 29.4
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 5.5e-07 59.3 241 31.1
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 5.5e-07 59.3 238 30.7
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 7.2e-07 58.9 275 28.7
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 7.2e-07 58.9 257 29.6
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 9.4e-07 58.5 244 32.8
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 9.4e-07 58.5 238 30.3
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 1.2e-06 58.2 250 29.6
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 2.1e-06 57.4 233 30.9
PRCOL_00003382 Prasinoderma coloniale HOM05D006904 ORTHO05D008439 2.1e-06 57.4 145 37.9
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 2.1e-06 57.4 144 35.4
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 2.1e-06 57.4 251 29.5
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 2.7e-06 57.0 252 32.1
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 2.7e-06 57.0 216 30.1
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 2.7e-06 57.0 238 30.3
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 2.7e-06 57.0 162 36.4
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 3.6e-06 56.6 257 28.8
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 3.6e-06 56.6 151 31.8
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 3.6e-06 56.6 152 31.6
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 3.6e-06 56.6 230 30.4
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 3.6e-06 56.6 255 29.0
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 4.7e-06 56.2 251 31.5
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 8.0e-06 55.5 255 30.6


User provided reference genes

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