Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g141626 Chlamydomonas reinhardtii HOM05D005079 ORTHO05D006362 0.0e+00 1553.9 1299 100.0
CBR_g41210 Chara braunii HOM05D005079 ORTHO05D006362 7.8e-32 144.1 657 24.0
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 3.4e-27 128.6 662 23.7
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 7.5e-27 127.5 662 24.0
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 1.9e-25 122.9 663 24.0
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 4.1e-25 121.7 659 23.5
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 4.1e-25 121.7 655 23.4
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.1e-24 119.4 538 24.9
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 6.0e-24 117.9 542 25.3
AagrBONN_evm.TU.Sc2ySwM_344.1170 Anthoceros agrestis HOM05D005079 ORTHO05D006362 5.1e-23 114.8 374 28.6
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 1.5e-22 113.2 655 22.9
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 1.9e-22 112.8 369 27.6
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 3.3e-22 112.1 544 23.9
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 9.5e-22 110.5 354 28.2
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 2.8e-21 109.0 364 27.2
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 3.6e-21 108.6 347 27.4
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 3.6e-21 108.6 357 27.2
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 4.7e-21 108.2 347 27.4
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 6.2e-21 107.8 646 22.9
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 8.1e-21 107.5 357 25.2
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 8.1e-21 107.5 357 26.9
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 1.4e-20 106.7 357 28.6
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 1.8e-20 106.3 348 28.7
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 2.4e-20 105.9 363 25.9
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 2.4e-20 105.9 655 21.8
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 3.1e-20 105.5 357 28.6
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 3.1e-20 105.5 356 28.4
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 4.0e-20 105.1 357 28.3
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 4.0e-20 105.1 350 27.1
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 4.0e-20 105.1 369 26.8
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 4.0e-20 105.1 543 23.9
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 4.0e-20 105.1 347 28.0
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 5.2e-20 104.8 364 26.4
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 5.2e-20 104.8 351 27.6
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 8.9e-20 104.0 364 24.7
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 1.2e-19 103.6 535 23.4
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 1.2e-19 103.6 350 27.7
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 1.2e-19 103.6 652 21.8
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 1.5e-19 103.2 359 27.3
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 1.5e-19 103.2 542 22.3
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 2.6e-19 102.4 350 26.9
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 3.4e-19 102.1 359 27.0
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 3.4e-19 102.1 364 26.1
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 3.4e-19 102.1 346 25.7
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 4.4e-19 101.7 347 27.1
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 4.4e-19 101.7 353 27.2
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 4.4e-19 101.7 365 27.7
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 5.8e-19 101.3 535 22.1
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 5.8e-19 101.3 367 26.2
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 7.6e-19 100.9 366 26.2
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 7.6e-19 100.9 348 26.4
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 7.6e-19 100.9 536 22.9
SMO365G0062 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 7.6e-19 100.9 358 26.0
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 9.9e-19 100.5 359 26.5
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 1.3e-18 100.1 368 26.1
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 2.2e-18 99.4 348 25.9
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 2.2e-18 99.4 347 25.1
Mapoly0021s0157 Marchantia polymorpha HOM05D005079 ORTHO05D006362 2.2e-18 99.4 362 25.4
SMO176G0009 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.2e-18 99.4 358 26.3
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 2.9e-18 99.0 348 27.9
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 4.9e-18 98.2 347 26.5
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 4.9e-18 98.2 347 26.5
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 4.9e-18 98.2 654 21.6
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 4.9e-18 98.2 347 25.6
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 8.4e-18 97.4 359 27.0
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 8.4e-18 97.4 359 26.5
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 8.4e-18 97.4 349 26.9
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 8.4e-18 97.4 349 27.5
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 1.1e-17 97.1 350 27.1
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 1.4e-17 96.7 389 25.4
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 1.4e-17 96.7 364 24.5
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 1.4e-17 96.7 364 25.5
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 1.4e-17 96.7 357 27.7
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 1.9e-17 96.3 349 27.2
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 2.4e-17 95.9 358 27.1
SMO014G0029 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.4e-17 95.9 358 26.0
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 3.2e-17 95.5 359 26.7
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 3.2e-17 95.5 364 25.3
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 4.1e-17 95.1 359 26.7
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 4.1e-17 95.1 348 25.6
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 4.1e-17 95.1 365 24.9
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 5.4e-17 94.7 364 24.7
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 9.2e-17 94.0 359 27.0
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 9.2e-17 94.0 365 24.7
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 9.2e-17 94.0 365 24.7
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 1.6e-16 93.2 359 26.7
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 1.6e-16 93.2 359 26.7
Pp3c6_22100 Physcomitrium patens HOM05D005079 ORTHO05D006362 1.6e-16 93.2 355 25.1
SMO014G0007 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.6e-16 93.2 358 25.7
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 2.1e-16 92.8 348 27.0
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 2.1e-16 92.8 358 26.5
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 2.7e-16 92.4 357 26.1
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 4.6e-16 91.7 364 24.7
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 6.0e-16 91.3 359 25.1
SMO304G0004 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.0e-15 90.5 358 25.4
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 1.3e-15 90.1 358 25.7
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 3.0e-15 89.0 348 25.3
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 3.9e-15 88.6 622 21.2
Migut.N00546 Erythranthe guttata HOM05D005079 ORTHO05D006362 1.5e-14 86.7 418 23.7
Peaxi162Scf02065g00020 Petunia axillaris HOM05D005079 ORTHO05D006362 5.6e-14 84.7 234 29.9
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 9.6e-14 84.0 376 25.5
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 9.6e-14 84.0 351 24.8
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 9.6e-14 84.0 349 23.5
Hma1.2p1_1172F.1_g263550 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 2.8e-13 82.4 154 33.1
SMO304G0051 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.7e-10 73.2 155 30.3
AL7G38250 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 2.9e-10 72.4 243 28.0
Dinv39143 Davidia involucrata HOM05D005079 ORTHO05D006362 2.4e-09 69.3 130 32.3
SMO304G0113 Selaginella moellendorffii HOM05D013654 ORTHO05D006362 2.4e-09 69.3 155 29.0
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 7.8e-08 64.3 72 41.7
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 7.8e-08 64.3 242 26.9
Migut.A00942 Erythranthe guttata HOM05D005079 ORTHO05D006362 1.3e-07 63.5 233 24.0
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 3.9e-07 62.0 72 38.9
Dinv39142 Davidia involucrata HOM05D005079 ORTHO05D006362 4.3e-06 58.5 148 32.4
CDE04G3241 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 7.3e-06 57.8 243 26.3
MBI09_g47605_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 7.3e-06 57.8 51 49.0


User provided reference genes

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