Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 3.4e-170 601.7 321 100.0
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 1.0e-86 324.3 320 57.8
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 2.8e-84 316.2 311 56.3
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 1.4e-83 313.9 309 56.3
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 3.5e-82 309.3 308 58.1
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 2.9e-81 306.2 308 57.8
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 6.5e-81 305.1 308 56.2
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 8.5e-81 304.7 306 57.5
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 1.1e-80 304.3 309 55.3
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 1.9e-80 303.5 308 55.2
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.9e-80 303.5 312 55.4
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.5e-80 303.1 308 56.5
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.5e-80 303.1 308 56.2
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 3.2e-80 302.8 308 55.8
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 3.2e-80 302.8 308 55.2
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 3.2e-80 302.8 308 55.2
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 4.2e-80 302.4 308 54.9
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 5.5e-80 302.0 308 55.8
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 5.5e-80 302.0 308 54.9
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 5.5e-80 302.0 308 55.2
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 5.5e-80 302.0 308 55.2
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 7.2e-80 301.6 308 55.8
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 9.4e-80 301.2 313 56.9
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 9.4e-80 301.2 308 55.2
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 9.4e-80 301.2 313 55.0
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.2e-79 300.8 308 57.1
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.2e-79 300.8 308 57.1
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 1.2e-79 300.8 319 53.9
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 1.6e-79 300.4 316 55.4
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 1.6e-79 300.4 308 55.8
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 1.6e-79 300.4 308 54.9
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 2.1e-79 300.1 308 56.2
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 2.1e-79 300.1 308 54.5
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 2.1e-79 300.1 308 55.2
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.1e-79 300.1 308 55.2
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 2.7e-79 299.7 317 56.2
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 2.7e-79 299.7 312 54.5
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 2.7e-79 299.7 312 54.8
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 2.7e-79 299.7 326 53.4
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 3.6e-79 299.3 308 57.1
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 4.7e-79 298.9 306 55.9
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 4.7e-79 298.9 308 55.2
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 6.1e-79 298.5 308 56.2
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 6.1e-79 298.5 308 55.2
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 6.1e-79 298.5 308 55.5
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 8.0e-79 298.1 308 54.5
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 8.0e-79 298.1 308 54.5
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 8.0e-79 298.1 316 54.7
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 8.0e-79 298.1 308 55.2
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 8.0e-79 298.1 308 55.8
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 8.0e-79 298.1 308 55.5
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 1.0e-78 297.7 308 57.1
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.0e-78 297.7 312 54.5
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 1.0e-78 297.7 308 54.9
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 1.4e-78 297.4 308 55.2
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.4e-78 297.4 313 54.6
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 1.8e-78 297.0 308 55.8
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.8e-78 297.0 316 54.4
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.3e-78 296.6 308 54.2
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.3e-78 296.6 308 53.9
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 3.0e-78 296.2 308 54.2
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 4.0e-78 295.8 308 54.2
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 4.0e-78 295.8 308 54.2
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 4.0e-78 295.8 308 54.2
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 4.0e-78 295.8 312 56.4
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 8.8e-78 294.7 308 54.9
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 8.8e-78 294.7 308 55.8
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.2e-77 294.3 317 53.0
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.2e-77 294.3 308 54.9
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.2e-77 294.3 312 54.2
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 1.2e-77 294.3 308 54.5
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 1.5e-77 293.9 308 55.2
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 2.0e-77 293.5 308 55.2
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 2.0e-77 293.5 308 56.2
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 4.4e-77 292.4 308 55.5
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.4e-77 292.4 319 53.3
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 5.7e-77 292.0 308 54.5
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 7.5e-77 291.6 308 56.2
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 1.7e-76 290.4 311 54.0
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 1.7e-76 290.4 326 53.7
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.8e-76 289.7 318 53.1
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.7e-76 289.3 319 52.7
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 3.5e-74 282.7 285 56.5
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.0e-73 281.2 337 49.9
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.1e-72 277.7 289 54.3
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 1.9e-72 276.9 308 53.6
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 3.2e-72 276.2 356 48.6
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.7e-71 273.1 289 54.7
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 6.1e-71 271.9 367 46.9
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 8.8e-70 268.1 342 48.0
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 2.0e-69 266.9 289 52.6
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 9.8e-69 264.6 308 51.3
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 4.8e-68 262.3 279 54.5
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 2.4e-67 260.0 308 51.0
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.6e-66 257.3 314 48.7
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.7e-65 253.8 267 53.6
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.7e-65 253.8 266 55.3
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 2.5e-64 250.0 308 51.3
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 1.6e-63 247.3 278 52.5
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 4.7e-63 245.7 269 54.6
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.4e-62 244.2 308 49.7
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 5.7e-61 238.8 240 56.2
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.9e-60 235.7 364 43.1
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.2e-59 233.0 242 55.8
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 5.9e-58 228.8 308 44.5
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 1.5e-56 224.2 317 43.5
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 6.8e-54 215.3 308 44.8
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.3e-52 211.1 231 50.2
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.2e-52 210.3 215 53.5
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 7.5e-45 185.3 182 58.8
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 2.2e-44 183.7 180 57.2
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 2.3e-38 163.7 170 55.3
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 2.3e-38 163.7 225 44.4
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.0e-37 160.6 288 37.2
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.7e-36 157.5 155 55.5
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 7.1e-35 152.1 188 46.3
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.8e-31 140.2 266 36.1
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.1e-30 136.7 124 58.1
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 1.1e-27 128.3 118 56.8
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.1e-27 128.3 124 57.3
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 5.4e-27 125.9 191 45.0
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 7.8e-18 95.5 76 55.3
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 4.3e-16 89.7 96 49.0
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 1.1e-14 85.1 236 32.2
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.4e-14 84.7 109 46.8
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 2.0e-13 80.9 135 41.5
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.6e-13 80.5 90 46.7
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 2.5e-08 63.9 112 39.3
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 8.1e-07 58.9 49 61.2
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 3.1e-06 57.0 84 41.7


User provided reference genes

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