Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g117550 Chlamydomonas reinhardtii HOM05D006591 ORTHO05D007861 2.4e-77 292.7 233 100.0
TPR.G2283 Trifolium pratense HOM05D006591 ORTHO05D007861 2.6e-18 96.7 100 50.0
Solyc05g012590.4 Solanum lycopersicum HOM05D006591 ORTHO05D007861 7.0e-16 88.6 100 45.0
Pp3c6_21850 Physcomitrium patens HOM05D006591 ORTHO05D007861 9.1e-16 88.2 99 51.5
Phvul.002G068900 Phaseolus vulgaris HOM05D006591 ORTHO05D007861 1.2e-15 87.8 96 49.0
MELO3C002930.2 Cucumis melo HOM05D006591 ORTHO05D007861 1.6e-15 87.4 98 43.9
PGR119G1238 Punica granatum HOM05D006591 ORTHO05D007861 1.6e-15 87.4 100 46.0
AagrBONN_evm.TU.Sc2ySwM_344.1136 Anthoceros agrestis HOM05D006591 ORTHO05D007861 2.6e-15 86.7 103 49.5
Cpa.g.sc1.95 Carica papaya HOM05D006591 ORTHO05D007861 2.6e-15 86.7 100 45.0
Glyma.02G113900 Glycine max HOM05D006591 ORTHO05D007861 3.5e-15 86.3 98 49.0
CSS0032544 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 4.5e-15 85.9 98 43.9
Actinidia19919 Actinidia chinensis HOM05D006591 ORTHO05D007861 2.9e-14 83.2 103 42.7
Psat2g128080 Pisum sativum HOM05D006591 ORTHO05D007861 6.5e-14 82.0 100 45.0
COL.COLO4_05797 Corchorus olitorius HOM05D006591 ORTHO05D007861 1.5e-13 80.9 98 42.9
SEGI_35394 Sequoiadendron giganteum HOM05D006591 ORTHO05D007861 1.5e-13 80.9 87 47.1
arahy.Tifrunner.gnm1.ann1.74ATFD Arachis hypogaea HOM05D006591 ORTHO05D007861 1.9e-13 80.5 98 42.9
Gohir.D05G306200 Gossypium hirsutum HOM05D006591 ORTHO05D007861 1.9e-13 80.5 103 45.6
Peaxi162Scf00314g00027 Petunia axillaris HOM05D006591 ORTHO05D007861 1.9e-13 80.5 99 43.4
Gorai.009G326200 Gossypium raimondii HOM05D006591 ORTHO05D007861 3.2e-13 79.7 103 45.6
Gohir.A05G306200 Gossypium hirsutum HOM05D006591 ORTHO05D007861 4.2e-13 79.3 103 45.6
Mapoly0001s0139 Marchantia polymorpha HOM05D006591 ORTHO05D007861 2.1e-12 77.0 91 45.1
QL03p070967 Quercus lobata HOM05D006591 ORTHO05D007861 2.1e-12 77.0 96 41.7
Thhalv10004832m.g Eutrema salsugineum HOM05D006591 ORTHO05D007861 4.7e-12 75.9 97 43.3
Lj2g0025600 Lotus japonicus HOM05D006591 ORTHO05D007861 6.1e-12 75.5 100 42.0
Actinidia31944 Actinidia chinensis HOM05D006591 ORTHO05D007861 8.0e-12 75.1 97 39.2
BcaC04g21487 Brassica carinata HOM05D006591 ORTHO05D007861 8.0e-12 75.1 96 40.6
C09p31230 Brassica napus HOM05D006591 ORTHO05D007861 8.0e-12 75.1 96 40.6
BolC9t55979H Brassica oleracea HOM05D006591 ORTHO05D007861 8.0e-12 75.1 96 40.6
Haze_11932 Corylus avellana HOM05D006591 ORTHO05D007861 1.0e-11 74.7 123 38.2
DCAR_027452 Daucus carota HOM05D006591 ORTHO05D007861 1.0e-11 74.7 104 37.5
vmacro16368 Vaccinium macrocarpon HOM05D006591 ORTHO05D007861 1.4e-11 74.3 100 41.0
Rhsim12G0134100 Rhododendron simsii HOM05D006591 ORTHO05D007861 1.8e-11 73.9 93 41.9
Cc11_g12350 Coffea canephora HOM05D006591 ORTHO05D007861 3.0e-11 73.2 96 40.6
GSVIVG01012181001 Vitis vinifera HOM05D006591 ORTHO05D007861 3.0e-11 73.2 98 39.8
Glyma.01G055500 Glycine max HOM05D006591 ORTHO05D007861 4.0e-11 72.8 100 42.0
CSS0024373 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 5.2e-11 72.4 86 41.9
HanXRQChr17g0545461 Helianthus annuus HOM05D006591 ORTHO05D007861 5.2e-11 72.4 96 41.7
Dinv16706 Davidia involucrata HOM05D006591 ORTHO05D007861 8.8e-11 71.6 106 38.7
Hund25197 Selenicereus undatus HOM05D006591 ORTHO05D007861 1.2e-10 71.2 95 38.9
CSS0002938 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.5e-10 70.9 86 41.9
CSS0020090 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.5e-10 70.9 86 41.9
Sopen05g007420 Solanum pennellii HOM05D006591 ORTHO05D007861 2.6e-10 70.1 100 38.0
PGSC0003DMG400028326 Solanum tuberosum HOM05D006591 ORTHO05D007861 4.4e-10 69.3 100 38.0
Ciclev10032613m.g Citrus clementina HOM05D006591 ORTHO05D007861 5.7e-10 68.9 100 38.0
Duzib268G0337 Durio zibethinus HOM05D006591 ORTHO05D007861 7.5e-10 68.6 94 39.4
CANSAT64G0984 Cannabis sativa HOM05D006591 ORTHO05D007861 3.7e-09 66.2 105 37.1
CSS0029304 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 4.8e-09 65.9 86 38.4
EL10Ac6g14960 Beta vulgaris HOM05D006591 ORTHO05D007861 6.3e-09 65.5 101 33.7
arahy.Tifrunner.gnm1.ann1.09DLU7 Arachis hypogaea HOM05D006591 ORTHO05D007861 8.2e-09 65.1 98 36.7
TWI79G1606 Tripterygium wilfordii HOM05D006591 ORTHO05D007861 1.1e-08 64.7 105 40.0
CBR_g23768 Chara braunii HOM05D006591 ORTHO05D007861 1.4e-08 64.3 100 42.0
VMungo1215G0675 Vigna mungo HOM05D006591 ORTHO05D007861 1.4e-08 64.3 96 40.6
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.8e-08 63.9 92 41.3
CSS0029980 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 3.1e-08 63.2 86 40.7
CAN.G1340.9 Capsicum annuum HOM05D006591 ORTHO05D007861 5.3e-08 62.4 97 38.1
ECA246G1963 Erigeron canadensis HOM05D006591 ORTHO05D007861 7.0e-08 62.0 92 35.9
TPR.G24426 Trifolium pratense HOM05D006591 ORTHO05D007861 9.1e-08 61.6 100 37.0
Cfa008903 Carpinus fangiana HOM05D006591 ORTHO05D007861 1.2e-07 61.2 100 38.0
Nn4g23331 Nelumbo nucifera HOM05D006591 ORTHO05D007861 1.6e-07 60.8 105 39.0
ATR0111G005 Amborella trichopoda HOM05D006591 ORTHO05D007861 3.5e-07 59.7 106 33.0
Lj3C1032T3 Lonicera japonica HOM05D006591 ORTHO05D007861 5.9e-07 58.9 97 37.1
Lalb_Chr10g0098581 Lupinus albus HOM05D006591 ORTHO05D007861 1.7e-06 57.4 99 36.4
Ca_04911_v3 Cicer arietinum L. HOM05D006591 ORTHO05D007861 2.2e-06 57.0 100 37.0
EL10Ac6g14961 Beta vulgaris HOM05D027931 ORTHO05D007861 3.8e-06 56.2 107 30.8
Medtr5g043640 Medicago truncatula HOM05D006591 ORTHO05D007861 3.8e-06 56.2 100 35.0
Ah.02g126600 Amaranthus hybridus HOM05D006591 ORTHO05D007861 5.0e-06 55.8 90 34.4


User provided reference genes

Program Settings