Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 0.0e+00 1106.3 536 100.0
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 8.5e-150 534.6 536 51.7
Cre02.g097600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 9.0e-67 258.8 589 30.6
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.6e-60 238.0 545 30.5
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 5.3e-59 233.0 363 37.7
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 3.7e-12 77.4 145 38.6
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 3.1e-11 74.3 144 34.0
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 3.1e-11 74.3 158 33.5
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 4.1e-11 73.9 144 34.7
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 5.3e-11 73.6 145 33.8
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 9.1e-11 72.8 201 28.4
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.6e-10 72.0 144 34.7
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 1.6e-10 72.0 144 34.0
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 2.6e-10 71.2 144 36.1
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 3.5e-10 70.9 144 34.7
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 3.5e-10 70.9 145 32.4
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 3.5e-10 70.9 145 32.4
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 4.5e-10 70.5 145 33.1
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 5.9e-10 70.1 185 30.8
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 1.0e-09 69.3 144 34.7
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 1.3e-09 68.9 144 34.7
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.3e-09 68.9 138 34.1
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.7e-09 68.6 144 31.9
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 1.7e-09 68.6 145 31.0
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.7e-09 68.6 144 32.6
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.7e-09 68.6 144 34.0
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 2.2e-09 68.2 144 34.7
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 2.2e-09 68.2 145 35.2
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 2.9e-09 67.8 144 33.3
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.9e-09 67.8 144 33.3
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 2.9e-09 67.8 144 34.0
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.9e-09 67.8 162 32.1
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 2.9e-09 67.8 151 32.5
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 3.8e-09 67.4 145 33.1
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.8e-09 67.4 144 33.3
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 3.8e-09 67.4 187 29.4
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 5.0e-09 67.0 142 31.7
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 6.5e-09 66.6 134 29.1
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 6.5e-09 66.6 144 32.6
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 6.5e-09 66.6 142 32.4
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 8.5e-09 66.2 158 34.8
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 8.5e-09 66.2 143 32.2
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 8.5e-09 66.2 144 31.9
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 8.5e-09 66.2 144 32.6
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 1.1e-08 65.9 151 31.1
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 1.1e-08 65.9 137 33.6
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.1e-08 65.9 138 35.5
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.5e-08 65.5 142 32.4
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.5e-08 65.5 144 32.6
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 1.5e-08 65.5 142 33.1
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.9e-08 65.1 144 31.9
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.9e-08 65.1 145 34.5
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.9e-08 65.1 144 31.2
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.9e-08 65.1 142 31.0
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 1.9e-08 65.1 158 33.5
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.9e-08 65.1 208 29.3
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.9e-08 65.1 150 32.7
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 1.9e-08 65.1 158 34.2
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.5e-08 64.7 143 32.2
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 2.5e-08 64.7 145 33.8
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 2.5e-08 64.7 142 30.3
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 3.2e-08 64.3 142 32.4
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 3.2e-08 64.3 142 32.4
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 3.2e-08 64.3 144 33.3
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 3.2e-08 64.3 144 33.3
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 4.2e-08 63.9 159 33.3
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 4.2e-08 63.9 142 31.0
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 4.2e-08 63.9 148 32.4
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 4.2e-08 63.9 135 34.1
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 5.5e-08 63.5 144 33.3
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 5.5e-08 63.5 142 31.0
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 5.5e-08 63.5 142 31.0
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 7.2e-08 63.2 140 32.1
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 7.2e-08 63.2 145 34.5
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 7.2e-08 63.2 145 34.5
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 7.2e-08 63.2 141 33.3
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 7.2e-08 63.2 142 32.4
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 7.2e-08 63.2 142 31.0
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 9.4e-08 62.8 141 33.3
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 9.4e-08 62.8 142 31.0
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 9.4e-08 62.8 153 34.0
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 1.2e-07 62.4 142 31.7
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 1.2e-07 62.4 170 31.2
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 1.2e-07 62.4 189 30.2
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 1.2e-07 62.4 144 31.9
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 1.2e-07 62.4 158 32.3
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.6e-07 62.0 157 32.5
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.6e-07 62.0 144 32.6
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 1.6e-07 62.0 141 34.8
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.6e-07 62.0 158 32.3
Pp3c12_8840 Physcomitrium patens HOM05D005825 ORTHO05D006483 2.1e-07 61.6 147 30.6
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.1e-07 61.6 135 32.6
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 2.7e-07 61.2 145 32.4
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 2.7e-07 61.2 144 34.0
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 2.7e-07 61.2 135 31.9
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 2.7e-07 61.2 137 33.6
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 2.7e-07 61.2 144 31.2
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 2.7e-07 61.2 144 31.2
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 3.6e-07 60.8 144 34.0
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 3.6e-07 60.8 144 34.0
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 3.6e-07 60.8 144 29.9
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.7e-07 60.5 146 32.2
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 6.1e-07 60.1 158 32.3
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 6.1e-07 60.1 139 33.1
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 8.0e-07 59.7 151 31.1
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 8.0e-07 59.7 135 33.3
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 8.0e-07 59.7 135 33.3
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 8.0e-07 59.7 135 33.3
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 1.4e-06 58.9 135 32.6
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 2.3e-06 58.2 135 33.3
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 4.0e-06 57.4 189 28.6


User provided reference genes

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