Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 8.8e-168 593.6 307 100.0
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 8.4e-78 294.7 308 51.6
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 1.4e-77 293.9 310 51.0
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 2.1e-76 290.0 317 49.8
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 2.7e-76 289.7 310 50.6
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 7.9e-76 288.1 311 49.8
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 1.3e-75 287.3 315 49.8
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 2.3e-75 286.6 315 49.8
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 3.0e-75 286.2 312 50.0
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 3.0e-75 286.2 314 50.6
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 3.0e-75 286.2 308 51.6
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.9e-75 285.8 312 50.3
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 3.9e-75 285.8 313 49.2
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 5.1e-75 285.4 309 49.8
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 5.1e-75 285.4 309 51.1
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 6.7e-75 285.0 313 49.5
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 8.7e-75 284.6 312 50.0
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 8.7e-75 284.6 308 51.3
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 1.1e-74 284.3 308 51.0
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.1e-74 284.3 310 51.0
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.5e-74 283.9 304 51.3
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 1.5e-74 283.9 309 50.5
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 1.5e-74 283.9 313 49.5
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.5e-74 283.9 312 49.7
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.5e-74 283.1 315 50.8
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.5e-74 283.1 325 48.9
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 2.5e-74 283.1 325 48.9
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 2.5e-74 283.1 309 49.8
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 4.3e-74 282.3 310 49.4
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 4.3e-74 282.3 312 50.0
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.3e-74 282.3 310 50.6
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 4.3e-74 282.3 306 50.7
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 4.3e-74 282.3 314 49.4
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 5.7e-74 282.0 312 50.6
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 5.7e-74 282.0 314 50.6
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 5.7e-74 282.0 312 50.0
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 5.7e-74 282.0 310 50.6
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.7e-74 282.0 310 50.6
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 5.7e-74 282.0 310 49.4
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 7.4e-74 281.6 313 48.6
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 7.4e-74 281.6 308 51.0
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 7.4e-74 281.6 312 49.4
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 9.6e-74 281.2 313 50.2
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 9.6e-74 281.2 314 50.6
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.6e-74 281.2 310 50.6
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.6e-74 281.2 310 50.6
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.6e-74 281.2 310 50.6
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 9.6e-74 281.2 312 49.7
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 9.6e-74 281.2 313 49.5
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 1.3e-73 280.8 314 51.0
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.3e-73 280.8 307 50.5
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 1.3e-73 280.8 310 48.7
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.3e-73 280.8 312 49.7
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 1.6e-73 280.4 313 49.5
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.6e-73 280.4 313 49.8
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 1.6e-73 280.4 310 51.3
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 1.6e-73 280.4 313 49.8
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 2.1e-73 280.0 310 50.0
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 2.1e-73 280.0 309 50.5
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 2.1e-73 280.0 307 50.5
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 2.1e-73 280.0 309 49.8
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.1e-73 280.0 313 48.9
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 2.1e-73 280.0 311 50.2
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 2.8e-73 279.6 309 50.2
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.8e-73 279.6 312 48.7
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.8e-73 279.6 314 49.4
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 2.8e-73 279.6 311 49.5
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 2.8e-73 279.6 318 48.4
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 2.8e-73 279.6 306 50.3
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 2.8e-73 279.6 306 49.3
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 3.7e-73 279.3 312 49.7
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 3.7e-73 279.3 310 49.0
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.7e-73 279.3 321 47.7
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 3.7e-73 279.3 310 49.4
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 3.7e-73 279.3 314 49.4
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 3.7e-73 279.3 310 49.0
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 4.8e-73 278.9 312 48.7
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 4.8e-73 278.9 306 49.7
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 6.3e-73 278.5 312 50.0
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 8.2e-73 278.1 319 51.4
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 8.2e-73 278.1 311 49.2
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 1.1e-72 277.7 312 48.7
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.4e-72 277.3 312 48.7
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 2.4e-72 276.6 311 49.2
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 2.4e-72 276.6 306 49.0
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 3.1e-72 276.2 313 48.9
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 3.1e-72 276.2 308 50.0
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 4.1e-72 275.8 309 48.9
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 4.1e-72 275.8 313 49.2
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 4.1e-72 275.8 310 48.7
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.3e-72 275.4 314 49.0
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 5.3e-72 275.4 314 48.7
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 6.9e-72 275.0 310 48.1
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 9.0e-72 274.6 308 50.0
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.2e-71 274.2 309 49.5
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.2e-71 274.2 313 49.2
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.2e-71 274.2 309 47.9
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.2e-71 274.2 310 48.4
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 2.6e-71 273.1 313 48.2
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 2.6e-71 273.1 308 49.0
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.6e-71 273.1 328 47.9
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 3.4e-71 272.7 312 48.4
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.9e-71 271.9 302 48.3
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 1.0e-70 271.2 305 48.9
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 1.3e-70 270.8 307 48.9
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.3e-70 270.8 310 48.1
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.7e-70 270.4 310 47.7
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 1.7e-70 270.4 309 49.2
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 2.2e-70 270.0 307 49.2
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 2.9e-70 269.6 304 49.0
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 6.5e-70 268.5 309 47.9
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.4e-69 267.3 307 47.9
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 1.4e-69 267.3 307 47.9
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 2.5e-69 266.5 309 47.9
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 3.2e-69 266.2 305 48.2
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 5.5e-69 265.4 293 48.8
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 9.3e-69 264.6 313 47.9
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 2.1e-68 263.5 335 45.7
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 2.1e-68 263.5 310 46.5
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.8e-67 260.4 306 46.4
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 2.3e-67 260.0 314 47.1
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.3e-66 255.8 337 44.8
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.7e-66 255.4 308 47.4
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 7.4e-66 255.0 380 41.1
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 4.5e-63 245.7 290 46.2
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 2.9e-62 243.0 286 46.5
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 2.5e-61 240.0 288 46.2
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 5.5e-61 238.8 310 44.8
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.6e-60 237.3 310 44.5
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 2.7e-60 236.5 288 45.5
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 4.4e-58 229.2 322 42.2
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 1.8e-56 223.8 301 43.5
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 5.3e-56 222.2 258 48.4
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 7.7e-55 218.4 462 34.0
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.0e-54 218.0 283 45.2
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 3.8e-54 216.1 303 37.6
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.1e-48 196.4 245 45.3
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 3.6e-44 183.0 255 42.0
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 3.2e-37 159.8 153 56.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.4e-35 154.5 220 41.8
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 2.3e-35 153.7 275 37.5
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 6.8e-35 152.1 274 35.0
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 3.5e-31 139.8 180 46.1
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 2.2e-30 137.1 107 60.7
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 2.3e-27 127.1 118 51.7
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 4.0e-27 126.3 188 43.6
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 2.0e-26 124.0 293 29.4
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.4e-26 123.2 134 47.8
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 7.5e-26 122.1 130 50.8
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 7.5e-26 122.1 130 50.8
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 3.7e-25 119.8 153 47.1
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 1.1e-24 118.2 293 30.0
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 1.1e-24 118.2 114 51.8
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.4e-24 117.9 174 40.2
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.8e-24 117.5 114 51.8
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.8e-24 117.5 114 51.8
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.6e-23 114.4 94 55.3
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 6.6e-22 109.0 115 50.4
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 1.4e-19 101.3 71 63.4
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 1.2e-15 88.2 100 51.0
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.7e-14 84.3 79 51.9
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 8.6e-14 82.0 116 39.7
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 1.4e-11 74.7 86 46.5
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 1.4e-11 74.7 86 46.5
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 8.9e-11 72.0 134 35.1
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 8.9e-11 72.0 57 57.9
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.1e-08 65.1 43 65.1
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.7e-07 60.5 161 33.5
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.3e-06 58.2 44 59.1
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 1.7e-06 57.8 51 56.9
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.6e-06 55.8 150 31.3
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 8.6e-06 55.5 51 54.9


User provided reference genes

Program Settings