Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g099601 Chlamydomonas reinhardtii HOM05D000555 ORTHO05D000646 0.0e+00 3650.5 3590 100.0
Aa31LG3G16180 Aethionema arabicum HOM05D000555 ORTHO05D000646 2.6e-08 67.4 62 48.4
MD17G1222300 Malus domestica HOM05D000555 ORTHO05D000646 3.3e-08 67.0 101 40.6
SGA_v2.0_scaffold64G22020 Striga asiatica HOM05D000555 ORTHO05D000646 1.7e-07 64.7 63 46.0
Potri.001G046500 Populus trichocarpa HOM05D000555 ORTHO05D000646 2.2e-07 64.3 81 42.0
THA.LOC104803856 Tarenaya hassleriana HOM05D000555 ORTHO05D000646 2.8e-07 63.9 64 43.8
AL7G20060 Arabidopsis lyrata HOM05D000555 ORTHO05D000646 3.7e-07 63.5 76 44.7
BcaB01g06314 Brassica carinata HOM05D000555 ORTHO05D000646 3.7e-07 63.5 68 44.1
Eucgr.J03105 Eucalyptus grandis HOM05D000555 ORTHO05D000646 3.7e-07 63.5 74 43.2
Medtr4g006875 Medicago truncatula HOM05D000555 ORTHO05D000646 3.7e-07 63.5 78 41.0
Nitab4.5_0004147g0010 Nicotiana tabacum HOM05D000555 ORTHO05D000646 4.8e-07 63.2 63 42.9
Thhalv10024366m.g Eutrema salsugineum HOM05D000555 ORTHO05D000646 6.3e-07 62.8 80 43.8
Lj5g0020314 Lotus japonicus HOM05D000555 ORTHO05D000646 6.3e-07 62.8 64 42.2
Manes.04G103300 Manihot esculenta HOM05D000555 ORTHO05D000646 6.3e-07 62.8 75 40.0
Potri.003G181300 Populus trichocarpa HOM05D000555 ORTHO05D000646 6.3e-07 62.8 91 38.5
A01p06370 Brassica napus HOM05D000555 ORTHO05D000646 8.2e-07 62.4 78 44.9
A08p31450 Brassica napus HOM05D000555 ORTHO05D000646 8.2e-07 62.4 66 39.4
BraA01t00602Z Brassica rapa HOM05D000555 ORTHO05D000646 8.2e-07 62.4 78 44.9
CDE05G2238 Ceratophyllum demersum HOM05D000555 ORTHO05D001906 8.2e-07 62.4 84 36.9
Migut.I00597 Erythranthe guttata HOM05D000555 ORTHO05D000646 8.2e-07 62.4 62 45.2
Gorai.010G118000 Gossypium raimondii HOM05D000555 ORTHO05D000646 8.2e-07 62.4 65 43.1
Nn1g07523 Nelumbo nucifera HOM05D000555 ORTHO05D001906 8.2e-07 62.4 65 41.5
Prupe.3G097300 Prunus persica HOM05D000555 ORTHO05D000646 8.2e-07 62.4 69 50.7
PGR031G0476 Punica granatum HOM05D000555 ORTHO05D000646 8.2e-07 62.4 65 47.7
AT1G80810 Arabidopsis thaliana HOM05D000555 ORTHO05D000646 1.1e-06 62.0 87 35.6
C07p58970 Brassica napus HOM05D000555 ORTHO05D000646 1.1e-06 62.0 80 43.8
BolC7t46344H Brassica oleracea HOM05D000555 ORTHO05D000646 1.1e-06 62.0 80 43.8
SEGI_14130 Sequoiadendron giganteum HOM05D000555 ORTHO05D001906 1.1e-06 62.0 106 33.0
THA.LOC104822541 Tarenaya hassleriana HOM05D000555 ORTHO05D000646 1.1e-06 62.0 79 35.4
BcaC09g51979 Brassica carinata HOM05D000555 ORTHO05D000646 1.4e-06 61.6 78 44.9
A03p61100 Brassica napus HOM05D000555 ORTHO05D000646 1.4e-06 61.6 80 43.8
C01p07030 Brassica napus HOM05D000555 ORTHO05D000646 1.4e-06 61.6 78 44.9
BraA03t15149Z Brassica rapa HOM05D000555 ORTHO05D000646 1.4e-06 61.6 80 43.8
Carub.0006s0944 Capsella rubella HOM05D000555 ORTHO05D000646 1.4e-06 61.6 74 39.2
HanXRQChr16g0499661 Helianthus annuus HOM05D000555 ORTHO05D000646 1.4e-06 61.6 78 41.0
Lj3g0003571 Lotus japonicus HOM05D000555 ORTHO05D000646 1.4e-06 61.6 66 45.5
Lj3g0004040 Lotus japonicus HOM05D000555 ORTHO05D000646 1.4e-06 61.6 66 45.5
Lj3g0024067 Lotus japonicus HOM05D000555 ORTHO05D000646 1.4e-06 61.6 66 45.5
Psat7g259280 Pisum sativum HOM05D000555 ORTHO05D000646 1.4e-06 61.6 72 40.3
Psat7g259440 Pisum sativum HOM05D000555 ORTHO05D000646 1.4e-06 61.6 72 40.3
TPR.G38768 Trifolium pratense HOM05D000555 ORTHO05D000646 1.4e-06 61.6 80 42.5
AL6G21540 Arabidopsis lyrata HOM05D000555 ORTHO05D000646 1.8e-06 61.2 87 39.1
CDE05G2436 Ceratophyllum demersum HOM05D000555 ORTHO05D001906 1.8e-06 61.2 85 36.5
COL.COLO4_26681 Corchorus olitorius HOM05D000555 ORTHO05D000646 1.8e-06 61.2 79 39.2
Eucgr.C02662 Eucalyptus grandis HOM05D000555 ORTHO05D000646 1.8e-06 61.2 58 48.3
FAN02G1211 Fragaria x ananassa HOM05D000555 ORTHO05D000646 1.8e-06 61.2 87 40.2
Psat6g027440 Pisum sativum HOM05D000555 ORTHO05D000646 1.8e-06 61.2 82 37.8
A03p04800 Brassica napus HOM05D000555 ORTHO05D000646 2.4e-06 60.8 62 43.5
BraA03t09820Z Brassica rapa HOM05D000555 ORTHO05D000646 2.4e-06 60.8 62 43.5
BraA08t35067Z Brassica rapa HOM05D000555 ORTHO05D000646 2.4e-06 60.8 68 38.2
Cpa.g.sc10.87 Carica papaya HOM05D000555 ORTHO05D000646 2.4e-06 60.8 59 42.4
SalBow4G0223 Salvia bowleyana HOM05D000555 ORTHO05D000646 2.4e-06 60.8 63 44.4
Solyc03g117010.4 Solanum lycopersicum HOM05D000555 ORTHO05D000646 2.4e-06 60.8 62 45.2
Gohir.D06G103000 Gossypium hirsutum HOM05D000555 ORTHO05D000646 3.1e-06 60.5 65 41.5
Lsat_1_v5_gn_4_63920 Lactuca sativa HOM05D000555 ORTHO05D001906 3.1e-06 60.5 63 42.9
Sp6g32540 Schrenkiella parvula HOM05D000555 ORTHO05D000646 3.1e-06 60.5 68 39.7
TPR.G38929 Trifolium pratense HOM05D000555 ORTHO05D000646 3.1e-06 60.5 61 44.3
TAR636G1427 Trochodendron aralioides HOM05D000555 ORTHO05D000646 3.1e-06 60.5 66 42.4
Thhalv10018162m.g Eutrema salsugineum HOM05D000555 ORTHO05D000646 4.1e-06 60.1 90 35.6
Os06g0286351 Oryza sativa ssp. japonica HOM05D000555 ORTHO05D001906 4.1e-06 60.1 87 35.6
Sp1g14250 Schrenkiella parvula HOM05D000555 ORTHO05D000646 4.1e-06 60.1 86 38.4
THA.LOC104812796 Tarenaya hassleriana HOM05D000555 ORTHO05D001906 4.1e-06 60.1 61 39.3
Zm00001eb280900 Zea mays HOM05D000555 ORTHO05D001906 4.1e-06 60.1 55 49.1
BcaB01g05495 Brassica carinata HOM05D000555 ORTHO05D000646 5.3e-06 59.7 66 42.4
BolC3t13062H Brassica oleracea HOM05D000555 ORTHO05D000646 5.3e-06 59.7 66 42.4
FvH4_5g39410 Fragaria vesca HOM05D001061 ORTHO05D006808 5.3e-06 59.7 76 40.8
FAN08G2155 Fragaria x ananassa HOM05D001061 ORTHO05D006808 5.3e-06 59.7 76 40.8
Glyma.04G061700 Glycine max HOM05D000555 ORTHO05D000646 5.3e-06 59.7 62 45.2
RcHm_v2.0_Chr2g0133121 Rosa chinensis HOM05D000555 ORTHO05D000646 5.3e-06 59.7 84 38.1
AL2G40580 Arabidopsis lyrata HOM05D000555 ORTHO05D000646 7.0e-06 59.3 80 37.5
MSTRG.26035 Avicennia marina HOM05D000555 ORTHO05D000646 7.0e-06 59.3 63 41.3
BcaNung03120 Brassica carinata HOM05D000555 ORTHO05D000646 7.0e-06 59.3 62 48.4
MELO3C011294.2 Cucumis melo HOM05D000555 ORTHO05D000646 7.0e-06 59.3 85 36.5
FAN09G3803 Fragaria x ananassa HOM05D000555 ORTHO05D000646 7.0e-06 59.3 87 40.2
Glyma.06G062600 Glycine max HOM05D000555 ORTHO05D000646 7.0e-06 59.3 58 48.3
HanXRQChr09g0274471 Helianthus annuus HOM05D000555 ORTHO05D000646 7.0e-06 59.3 69 39.1
TWI18G1175 Tripterygium wilfordii HOM05D000555 ORTHO05D000646 7.0e-06 59.3 65 46.2
Atru.chr7.2535 Acer truncatum HOM05D000555 ORTHO05D000646 9.1e-06 58.9 64 40.6
BcaB03g13051 Brassica carinata HOM05D000555 ORTHO05D000646 9.1e-06 58.9 168 29.2
BolC1t00697H Brassica oleracea HOM05D000555 ORTHO05D000646 9.1e-06 58.9 78 43.6
CiPaw.01G254100 Carya illinoinensis HOM05D000555 ORTHO05D000646 9.1e-06 58.9 65 44.6
Thhalv10006733m.g Eutrema salsugineum HOM05D000555 ORTHO05D000646 9.1e-06 58.9 62 43.5
Manes.03G010000 Manihot esculenta HOM05D000555 ORTHO05D000646 9.1e-06 58.9 63 41.3
Zm00001eb380840 Zea mays HOM05D000555 ORTHO05D001906 9.1e-06 58.9 58 48.3


User provided reference genes

Program Settings