Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 0.0e+00 1143.6 615 100.0
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.9e-81 307.8 636 34.1
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 8.7e-66 255.8 508 34.6
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 2.1e-64 251.1 583 31.6
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.1e-63 248.8 533 32.3
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 2.8e-56 224.2 594 30.3
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.0e-50 205.7 427 32.1
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 3.2e-44 184.1 362 35.4
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 2.6e-38 164.5 564 26.6
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.9e-37 161.0 538 27.3
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 4.2e-36 157.1 531 27.1
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 9.4e-36 156.0 571 26.3
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.6e-35 154.1 444 27.7
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 4.7e-35 153.7 553 27.5
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.4e-34 152.1 549 26.2
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 2.3e-34 151.4 531 26.4
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 3.3e-33 147.5 493 25.6
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 5.7e-33 146.7 546 26.6
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 1.3e-32 145.6 582 26.5
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.7e-32 145.2 569 25.1
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 1.7e-32 145.2 569 25.1
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 6.3e-32 143.3 588 25.0
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.1e-31 142.5 503 25.4
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.4e-31 142.1 522 27.2
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.4e-31 142.1 544 25.6
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 4.1e-31 140.6 525 24.2
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 9.1e-31 139.4 586 24.9
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.5e-30 138.7 577 24.8
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.5e-30 138.7 564 25.2
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 2.0e-30 138.3 530 25.3
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 2.6e-30 137.9 583 24.5
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 4.5e-30 137.1 603 25.9
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.3e-29 135.6 577 24.1
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.7e-29 135.2 559 24.3
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 2.2e-29 134.8 503 25.2
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 2.2e-29 134.8 551 25.2
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.9e-29 134.4 384 28.4
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 3.8e-29 134.0 554 24.2
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 5.0e-29 133.7 542 23.4
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 6.5e-29 133.3 584 24.0
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 8.5e-29 132.9 507 25.4
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 8.5e-29 132.9 554 24.0
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 8.5e-29 132.9 525 25.7
Cfa026082 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.1e-28 132.5 677 23.2
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.4e-28 132.1 520 25.6
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.4e-28 132.1 552 24.5
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.4e-28 132.1 569 25.1
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.2e-27 129.0 489 25.4
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.6e-27 128.6 520 24.4
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 4.7e-27 127.1 574 24.2
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.0e-26 125.9 519 25.2
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.0e-26 125.9 446 24.7
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.3e-26 124.8 605 23.8
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 3.0e-26 124.4 481 25.4
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 3.9e-26 124.0 444 24.8
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 3.9e-26 124.0 561 24.4
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 5.2e-26 123.6 507 25.2
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 6.7e-26 123.2 526 23.8
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 8.8e-26 122.9 539 24.1
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.5e-25 122.1 591 24.5
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 2.6e-25 121.3 606 23.1
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 2.6e-25 121.3 521 24.6
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 9.7e-25 119.4 579 23.0
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.3e-24 119.0 444 25.2
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.3e-24 119.0 561 24.1
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.7e-24 118.6 582 23.4
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.8e-24 117.9 566 22.3
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 4.8e-24 117.1 538 24.9
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 4.8e-24 117.1 553 24.6
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 4.8e-24 117.1 565 23.9
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 6.3e-24 116.7 527 23.1
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.1e-23 115.9 428 23.4
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.1e-23 115.9 569 22.5
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.4e-23 115.5 568 24.6
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.8e-23 115.2 423 23.4
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.8e-23 115.2 584 23.6
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 3.1e-23 114.4 428 23.1
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.1e-23 114.4 583 23.2
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 3.1e-23 114.4 476 23.7
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.1e-23 114.4 575 23.5
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.2e-22 112.5 452 23.0
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.2e-22 112.5 463 25.5
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.6e-22 112.1 587 23.2
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.6e-22 112.1 587 23.2
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 2.0e-22 111.7 452 23.0
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.0e-22 111.7 541 23.5
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 2.6e-22 111.3 530 23.0
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.0e-21 109.4 595 22.9
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.0e-21 109.4 506 23.9
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-21 108.6 577 22.7
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.7e-21 108.6 525 22.9
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.2e-21 108.2 566 21.6
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 2.2e-21 108.2 542 23.4
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 2.2e-21 108.2 576 24.0
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 3.8e-21 107.5 544 23.2
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 5.0e-21 107.1 502 23.3
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.5e-20 105.5 424 23.6
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 7.2e-20 103.2 537 21.2
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 1.2e-19 102.4 553 21.5
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.6e-19 102.1 568 23.6
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 2.1e-19 101.7 545 23.3
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 4.7e-19 100.5 514 20.6
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 6.1e-19 100.1 539 21.2
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 6.1e-19 100.1 477 22.0
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.0e-18 99.4 552 22.8
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.4e-18 99.0 567 22.4
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.4e-18 99.0 585 22.7
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 1.8e-18 98.6 541 23.7
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 3.0e-18 97.8 423 21.0
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 8.8e-18 96.3 429 23.1
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.2e-17 95.9 583 22.1
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 4.4e-17 94.0 454 23.3
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 7.5e-17 93.2 468 24.6
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 9.7e-17 92.8 234 29.5
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 9.7e-17 92.8 529 22.5
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.7e-16 92.0 581 21.0
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 8.3e-16 89.7 506 23.1
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.1e-15 87.8 522 23.8
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.6e-14 85.5 456 23.0
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.0e-13 82.8 164 33.5
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.3e-13 82.4 589 22.2
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.3e-13 82.4 378 24.9
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.1e-12 79.3 589 22.1
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.5e-12 79.0 553 21.7
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.9e-12 78.6 589 21.6
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.4e-12 76.3 184 29.9
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.6e-11 75.5 561 22.3
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.4e-10 72.4 359 24.5
AagrBONN_evm.TU.Sc2ySwM_228.1577 Anthoceros agrestis HOM05D003578 ORTHO05D004021 4.0e-10 70.9 375 23.7
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 4.0e-10 70.9 575 20.7
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.6e-09 68.2 389 22.1
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.8e-08 64.7 164 28.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.7e-08 64.3 498 22.7
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 8.3e-08 63.2 567 19.6
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.4e-07 61.6 143 25.2
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.0e-06 58.5 552 22.5


User provided reference genes

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