Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 0.0e+00 1236.5 631 100.0
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.3e-183 646.4 469 70.8
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.5e-174 617.1 480 66.9
Cre10.g465000 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 5.1e-45 186.8 635 29.1
Cre06.g306050 Chlamydomonas reinhardtii HOM05D020067 ORTHO05D010759 1.8e-37 161.8 341 35.8
Cre09.g392766 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 6.7e-37 159.8 464 31.7
Cre02.g096500 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.5e-36 158.7 357 33.1
Cre02.g119500 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.3e-36 157.5 481 29.5
Cre06.g303100 Chlamydomonas reinhardtii HOM05D020067 ORTHO05D010759 3.3e-36 157.5 324 35.5
Cre12.g541211 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 4.3e-36 157.1 467 31.0
Cre04.g217700 Chlamydomonas reinhardtii HOM05D020067 ORTHO05D010759 5.6e-36 156.8 537 31.3
Cre07.g316200 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.8e-35 154.5 481 29.3
Cre12.g555100 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.1e-34 152.5 469 31.3
Cre05.g233400 Chlamydomonas reinhardtii HOM05D020067 ORTHO05D010759 1.4e-34 152.1 552 31.2
Cre11.g467607 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.5e-31 141.4 516 28.7
Cre05.g244550 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 5.5e-31 140.2 589 27.7
Cre07.g352250 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.5e-30 137.5 419 28.9
Cre16.g691350 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 7.9e-30 136.3 475 29.9
Cre12.g514100 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 4.3e-28 130.6 487 29.2
Cre16.g674150 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 7.4e-28 129.8 534 27.9
Cre13.g602800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 8.2e-27 126.3 377 32.1
Cre12.g512050 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.9e-24 117.9 458 26.6
SMO118G0013 Selaginella moellendorffii HOM05D013444 ORTHO05D010759 3.8e-24 117.5 434 28.6
Cre10.g455000 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 9.3e-23 112.8 561 27.1
Cre12.g517750 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.5e-22 110.9 527 25.2
Cre04.g229050 Chlamydomonas reinhardtii HOM05D019721 ORTHO05D021263 4.6e-22 110.5 79 81.0
SMO146G0329 Selaginella moellendorffii HOM05D023212 ORTHO05D010759 1.9e-20 105.1 343 28.9
Cre02.g078226 Chlamydomonas reinhardtii HOM05D021370 ORTHO05D010759 2.5e-20 104.8 158 50.6
Cre06.g300350 Chlamydomonas reinhardtii HOM05D017458 ORTHO05D010759 7.4e-20 103.2 77 76.6
Cre17.g701809 Chlamydomonas reinhardtii HOM05D020067 ORTHO05D010759 9.7e-20 102.8 248 33.5
AagrBONN_evm.TU.Sc2ySwM_369.394 Anthoceros agrestis HOM05D013444 ORTHO05D010759 2.2e-19 101.7 316 28.2
Cre05.g243650 Chlamydomonas reinhardtii HOM05D021370 ORTHO05D010759 3.7e-19 100.9 86 72.1
Cre05.g243550 Chlamydomonas reinhardtii HOM05D021370 ORTHO05D010759 4.8e-19 100.5 86 72.1
Cre17.g745297 Chlamydomonas reinhardtii HOM05D017458 ORTHO05D010759 1.8e-18 98.6 86 68.6
Pp3s76_130 Physcomitrium patens HOM05D023212 ORTHO05D010759 5.3e-18 97.1 276 28.6
SMO361G0258 Selaginella moellendorffii HOM05D026941 ORTHO05D010759 1.2e-17 95.9 347 30.3
SMO361G0753 Selaginella moellendorffii HOM05D026941 ORTHO05D010759 2.6e-17 94.7 347 30.0
Pp3c5_100 Physcomitrium patens HOM05D023212 ORTHO05D010759 7.7e-17 93.2 275 27.6
Pp3c5_103 Physcomitrium patens HOM05D023212 ORTHO05D010759 7.7e-17 93.2 275 27.6
Pp3c20_23730 Physcomitrium patens HOM05D023212 ORTHO05D010759 1.9e-15 88.6 255 27.5
SMO351G0100 Selaginella moellendorffii HOM05D013444 ORTHO05D010759 5.5e-15 87.0 129 42.6
SMO351G0636 Selaginella moellendorffii HOM05D013444 ORTHO05D010759 1.6e-14 85.5 422 25.1
SMO239G0038 Selaginella moellendorffii HOM05D013444 ORTHO05D010759 1.1e-12 79.3 304 26.0
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.5e-12 78.2 338 25.1
SMO361G0384 Selaginella moellendorffii HOM05D013444 ORTHO05D010759 2.5e-12 78.2 455 25.1
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 5.7e-12 77.0 338 24.9
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 9.7e-12 76.3 338 24.6
SMO361G0480 Selaginella moellendorffii HOM05D013444 ORTHO05D010759 2.2e-11 75.1 444 24.8
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 2.2e-11 75.1 305 25.9
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 3.7e-11 74.3 355 24.5
SMO087G0004 Selaginella moellendorffii HOM05D013444 ORTHO05D010759 3.7e-11 74.3 368 25.3
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 4.8e-11 73.9 472 23.1
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 4.8e-11 73.9 387 24.3
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 6.3e-11 73.6 339 23.9
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 1.1e-10 72.8 350 23.4
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 1.8e-10 72.0 351 24.5
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 9.1e-10 69.7 367 24.3
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 9.1e-10 69.7 336 24.7
SMO199G0103 Selaginella moellendorffii HOM05D013444 ORTHO05D010759 9.1e-10 69.7 355 25.4
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 1.5e-09 68.9 344 22.7
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.0e-09 68.6 350 23.1
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 2.0e-09 68.6 475 23.6
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 2.6e-09 68.2 344 25.0
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 2.6e-09 68.2 341 24.0
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 4.5e-09 67.4 478 23.4
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 4.5e-09 67.4 357 24.1
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 4.5e-09 67.4 354 23.2
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 4.5e-09 67.4 353 25.2
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 5.9e-09 67.0 349 25.2
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 1.0e-08 66.2 478 23.2
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 1.0e-08 66.2 346 24.6
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 1.7e-08 65.5 357 24.1
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 1.7e-08 65.5 481 23.7
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 2.2e-08 65.1 360 22.5
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 2.2e-08 65.1 351 21.9
Cre07.g352150 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.8e-08 64.3 81 40.7
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.8e-08 64.3 361 24.9
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.8e-08 64.3 363 23.4
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 5.0e-08 63.9 478 22.4
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 5.0e-08 63.9 351 24.2
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 6.5e-08 63.5 352 21.9
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 6.5e-08 63.5 357 23.8
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 6.5e-08 63.5 342 23.1
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 6.5e-08 63.5 342 23.1
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 8.5e-08 63.2 478 22.2
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 1.1e-07 62.8 351 21.9
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 1.1e-07 62.8 145 30.3
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 1.4e-07 62.4 354 24.0
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 1.9e-07 62.0 359 24.2
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 1.9e-07 62.0 298 24.8
SMO361G0674 Selaginella moellendorffii HOM05D013444 ORTHO05D010759 1.9e-07 62.0 148 33.1
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.9e-07 62.0 344 23.8
Cre03.g155950 Chlamydomonas reinhardtii HOM05D045378 ORTHO05D014588 2.5e-07 61.6 79 57.0
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 3.2e-07 61.2 347 22.5
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 3.2e-07 61.2 355 21.4
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 3.2e-07 61.2 354 23.2
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 3.2e-07 61.2 457 24.3
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 3.2e-07 61.2 352 22.2
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 4.2e-07 60.8 479 23.4
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 4.2e-07 60.8 355 22.0
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 4.2e-07 60.8 373 23.6
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 4.2e-07 60.8 364 23.4
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 4.2e-07 60.8 155 29.0
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 5.5e-07 60.5 492 22.2
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 5.5e-07 60.5 360 22.8
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 5.5e-07 60.5 349 21.8
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 5.5e-07 60.5 352 23.3
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 9.4e-07 59.7 348 23.6
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 9.4e-07 59.7 351 23.1
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.2e-06 59.3 349 22.6
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 1.2e-06 59.3 344 23.3
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 1.6e-06 58.9 482 23.4
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 1.6e-06 58.9 447 22.4
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 1.6e-06 58.9 461 21.9
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 1.6e-06 58.9 461 21.9
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.1e-06 58.5 146 27.4
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 2.1e-06 58.5 349 23.2
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 2.1e-06 58.5 348 21.3
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.7e-06 58.2 288 22.9
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 2.7e-06 58.2 362 22.7
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 3.6e-06 57.8 349 23.2
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 3.6e-06 57.8 345 22.0
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 4.7e-06 57.4 350 22.6
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 4.7e-06 57.4 342 23.7
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 6.1e-06 57.0 461 21.7
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 6.1e-06 57.0 357 21.3
MBI07_g38934_MAGBIO Magnolia biondii HOM05D000137 ORTHO05D009307 6.1e-06 57.0 135 30.4
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 6.1e-06 57.0 333 22.5
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 7.9e-06 56.6 298 23.8
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 7.9e-06 56.6 306 23.2
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 7.9e-06 56.6 350 21.1
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 7.9e-06 56.6 153 26.8
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 7.9e-06 56.6 139 29.5


User provided reference genes

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