Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 0.0e+00 1104.0 536 100.0
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 5.2e-224 781.2 525 70.1
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 4.1e-213 745.0 527 67.0
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 3.0e-211 738.8 535 65.0
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 5.2e-208 728.0 528 66.1
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 8.9e-208 727.2 535 63.9
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 1.2e-207 726.9 528 65.9
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 1.5e-207 726.5 535 63.7
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 3.4e-207 725.3 532 64.3
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 9.8e-207 723.8 527 63.9
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 1.7e-206 723.0 534 64.4
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 1.7e-206 723.0 534 64.4
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 1.7e-206 723.0 528 65.0
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 1.7e-206 723.0 527 64.9
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 2.2e-206 722.6 532 64.5
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 2.2e-206 722.6 530 65.5
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 2.9e-206 722.2 527 65.5
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 3.7e-206 721.8 527 65.1
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 4.9e-206 721.5 528 65.2
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 6.4e-206 721.1 527 65.1
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 8.3e-206 720.7 536 64.0
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 1.1e-205 720.3 527 64.3
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 1.9e-205 719.5 527 64.7
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 1.9e-205 719.5 527 64.7
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 2.4e-205 719.2 526 64.6
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 3.2e-205 718.8 527 64.7
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 5.4e-205 718.0 528 65.3
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 5.4e-205 718.0 536 63.4
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 7.0e-205 717.6 530 64.7
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.2e-204 716.8 527 64.5
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 1.2e-204 716.8 530 65.3
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 2.0e-204 716.1 537 63.9
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 2.0e-204 716.1 527 64.1
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 2.0e-204 716.1 530 64.7
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 3.5e-204 715.3 530 64.9
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 3.5e-204 715.3 527 63.8
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 6.0e-204 714.5 526 64.1
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 6.0e-204 714.5 530 64.5
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 7.8e-204 714.1 528 64.8
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 1.3e-203 713.4 527 65.1
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.7e-203 713.0 526 64.1
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 1.7e-203 713.0 527 63.9
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 1.7e-203 713.0 533 63.8
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.7e-203 713.0 527 64.3
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.3e-203 712.6 532 64.8
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.3e-203 712.6 527 62.8
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 2.3e-203 712.6 526 64.1
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 3.0e-203 712.2 527 63.9
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 3.0e-203 712.2 528 65.2
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 3.9e-203 711.8 526 63.9
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 3.9e-203 711.8 527 63.9
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 5.0e-203 711.4 527 63.9
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 1.1e-202 710.3 526 63.7
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 1.1e-202 710.3 528 64.2
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 1.1e-202 710.3 527 64.1
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 1.1e-202 710.3 528 64.4
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 1.1e-202 710.3 535 63.9
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.5e-202 709.9 532 63.2
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 1.9e-202 709.5 527 63.9
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.9e-202 709.5 527 63.8
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 2.5e-202 709.1 527 63.2
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 2.5e-202 709.1 526 63.9
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.5e-202 709.1 527 64.3
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 2.5e-202 709.1 527 63.9
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 3.3e-202 708.8 527 63.2
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 4.3e-202 708.4 527 64.5
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 5.6e-202 708.0 527 64.7
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 5.6e-202 708.0 527 63.8
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 7.3e-202 707.6 527 63.8
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 9.5e-202 707.2 527 63.8
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 1.2e-201 706.8 527 63.9
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.6e-201 706.4 528 64.6
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 1.6e-201 706.4 527 63.2
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.6e-201 706.4 527 63.8
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.6e-201 706.4 554 61.2
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 1.6e-201 706.4 528 62.9
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.6e-201 706.4 529 63.3
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 1.6e-201 706.4 527 63.4
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 2.1e-201 706.1 527 64.5
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 2.1e-201 706.1 527 63.2
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 2.8e-201 705.7 527 64.5
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.8e-201 705.7 533 62.9
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 2.8e-201 705.7 527 64.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.8e-201 705.7 538 61.7
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.6e-201 705.3 537 62.9
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.6e-201 705.3 537 62.9
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 3.6e-201 705.3 528 63.4
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.6e-201 705.3 527 63.8
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 4.7e-201 704.9 528 63.8
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 4.7e-201 704.9 529 63.9
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 4.7e-201 704.9 527 63.4
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 8.1e-201 704.1 533 63.2
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.1e-200 703.7 527 63.4
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.4e-200 703.4 528 64.0
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 2.3e-200 702.6 528 63.8
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 3.1e-200 702.2 529 63.7
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 4.0e-200 701.8 526 63.9
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 4.0e-200 701.8 534 63.1
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.0e-200 701.8 527 62.6
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.0e-200 701.8 527 63.2
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 5.2e-200 701.4 533 63.2
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 6.8e-200 701.0 553 61.1
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 6.8e-200 701.0 525 63.6
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 8.9e-200 700.7 532 63.2
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 3.4e-199 698.7 527 62.2
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 5.8e-199 698.0 527 62.2
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 9.8e-199 697.2 527 62.2
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 3.7e-198 695.3 528 63.6
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 4.9e-198 694.9 555 59.5
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 4.9e-198 694.9 527 62.0
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 8.3e-198 694.1 527 62.0
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.1e-197 693.7 527 61.9
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 1.6e-196 689.9 526 61.6
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 3.5e-196 688.7 528 61.9
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.5e-194 683.3 527 62.2
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 7.1e-189 664.5 528 61.4
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 8.1e-185 651.0 491 64.2
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 2.4e-184 649.4 487 64.5
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.3e-182 643.7 679 49.9
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 1.4e-181 640.2 530 58.5
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.7e-180 636.0 484 62.4
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 5.3e-176 621.7 660 49.7
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.4e-167 592.4 398 68.1
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 1.4e-157 560.5 443 61.9
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 2.7e-156 556.2 506 53.2
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 4.3e-154 548.9 374 67.9
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 7.4e-154 548.1 536 53.0
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.3e-142 510.8 492 52.6
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 9.4e-133 478.0 398 57.5
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.8e-129 466.5 541 47.5
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 6.3e-121 438.7 695 41.2
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 8.0e-116 421.8 533 45.8
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 2.6e-114 416.8 312 63.5
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 3.1e-91 340.1 412 45.9
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 6.8e-91 339.0 281 58.4
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 4.4e-82 309.7 262 56.9
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 8.4e-57 225.7 148 72.3
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.8e-51 208.0 148 63.5
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 2.1e-47 194.5 191 51.8
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 3.1e-35 154.1 168 47.6
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 9.3e-32 142.5 95 65.3
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 7.4e-29 132.9 140 46.4
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 1.3e-28 132.1 93 67.7
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 1.5e-21 108.6 117 49.6
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 9.7e-21 105.9 94 58.5
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 8.2e-12 76.3 94 44.7
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 7.0e-11 73.2 46 71.7
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 2.6e-10 71.2 195 29.2
Migut.E00508 Erythranthe guttata HOM05D003983 ORTHO05D004562 3.5e-10 70.9 218 27.5
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 1.7e-09 68.6 195 28.2
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 5.0e-09 67.0 60 55.0
Phvul.003G014300 Phaseolus vulgaris HOM05D003983 ORTHO05D004562 5.0e-09 67.0 207 26.6
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 5.0e-09 67.0 42 69.0
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 5.0e-09 67.0 42 69.0
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 1.1e-08 65.9 195 28.2
MELO3C018290.2 Cucumis melo HOM05D003983 ORTHO05D004562 1.5e-08 65.5 196 26.5
CsaV3_5G015330 Cucumis sativus L. HOM05D003983 ORTHO05D004562 1.9e-08 65.1 196 26.5
Sed0000196 Sechium edule HOM05D003983 ORTHO05D004562 2.5e-08 64.7 196 26.5
TWI74G1079 Tripterygium wilfordii HOM05D003983 ORTHO05D004562 3.2e-08 64.3 196 26.0
Pp3c10_17060 Physcomitrium patens HOM05D003983 ORTHO05D004562 1.2e-07 62.4 196 25.5
Pp3c3_33470 Physcomitrium patens HOM05D003983 ORTHO05D004562 1.6e-07 62.0 204 25.0
Cfa015064 Carpinus fangiana HOM05D003983 ORTHO05D004562 2.1e-07 61.6 205 24.9
HanXRQChr12g0366151 Helianthus annuus HOM05D003983 ORTHO05D004562 2.1e-07 61.6 204 24.5
Mapoly0037s0136 Marchantia polymorpha HOM05D003983 ORTHO05D004562 2.1e-07 61.6 214 25.7
Nn4g24498 Nelumbo nucifera HOM05D003983 ORTHO05D004562 2.1e-07 61.6 196 25.5
TWI56G0668 Tripterygium wilfordii HOM05D003983 ORTHO05D004562 2.1e-07 61.6 196 25.0
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 2.7e-07 61.2 208 26.4
HanXRQChr08g0224861 Helianthus annuus HOM05D003983 ORTHO05D004562 3.6e-07 60.8 203 26.1
arahy.Tifrunner.gnm1.ann1.H0K2UA Arachis hypogaea HOM05D003983 ORTHO05D004562 4.7e-07 60.5 205 25.4
arahy.Tifrunner.gnm1.ann1.L1YRVI Arachis hypogaea HOM05D003983 ORTHO05D004562 4.7e-07 60.5 205 25.4
ClCG10G009660 Citrullus lanatus HOM05D001661 ORTHO05D001575 1.0e-06 59.3 148 28.4
ECA246G0293 Erigeron canadensis HOM05D003983 ORTHO05D004562 1.0e-06 59.3 196 25.0
Os03g0718000 Oryza sativa ssp. japonica HOM05D003983 ORTHO05D004562 1.0e-06 59.3 197 24.4
SEGI_15310 Sequoiadendron giganteum HOM05D003983 ORTHO05D004562 1.0e-06 59.3 215 24.2
Cc00_g17040 Coffea canephora HOM05D003983 ORTHO05D004562 2.3e-06 58.2 196 23.5
Cc11_g05880 Coffea canephora HOM05D003983 ORTHO05D004562 2.3e-06 58.2 196 23.0
ECA233G0760 Erigeron canadensis HOM05D003983 ORTHO05D004562 2.3e-06 58.2 196 25.0
Medtr1g033480 Medicago truncatula HOM05D003983 ORTHO05D004562 2.3e-06 58.2 206 23.3
Aqoxy6G00821 Aquilegia oxysepala HOM05D001661 ORTHO05D001575 5.2e-06 57.0 96 35.4
Cre14.g620300 Chlamydomonas reinhardtii HOM05D003983 ORTHO05D004562 5.2e-06 57.0 201 24.9
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 5.2e-06 57.0 45 57.8
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 6.7e-06 56.6 191 24.1
unitig_21.g20698 Utricularia gibba HOM05D001661 ORTHO05D001575 8.8e-06 56.2 96 32.3


User provided reference genes

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