Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 1.8e-221 772.3 391 100.0
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 3.3e-135 485.7 343 69.4
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 1.5e-127 460.3 346 64.5
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 2.4e-125 453.0 347 64.6
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 4.4e-124 448.7 346 64.2
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 7.6e-124 448.0 350 62.6
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 3.8e-123 445.7 375 59.5
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.1e-122 444.1 350 62.0
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 1.4e-122 443.7 350 61.7
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 1.9e-122 443.4 346 62.1
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.4e-122 443.0 346 62.1
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 2.4e-122 443.0 346 62.1
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 4.2e-122 442.2 344 62.5
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 5.4e-122 441.8 344 62.8
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 7.1e-122 441.4 346 62.1
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.6e-121 440.3 345 62.9
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.6e-121 440.3 347 61.7
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 1.6e-121 440.3 350 60.9
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.1e-121 439.9 346 61.6
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 2.7e-121 439.5 345 62.3
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 3.5e-121 439.1 350 61.1
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 3.5e-121 439.1 344 62.8
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 3.5e-121 439.1 344 61.9
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 4.6e-121 438.7 350 61.1
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 6.0e-121 438.3 346 61.0
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 6.0e-121 438.3 345 62.0
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 7.9e-121 438.0 350 59.7
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 1.0e-120 437.6 350 60.6
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.0e-120 437.6 344 61.9
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 1.0e-120 437.6 350 59.7
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 1.3e-120 437.2 346 61.0
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 1.3e-120 437.2 346 61.0
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 2.3e-120 436.4 344 61.9
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 2.3e-120 436.4 344 61.6
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 3.0e-120 436.0 350 59.7
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 3.0e-120 436.0 344 61.3
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 3.0e-120 436.0 346 61.0
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 5.1e-120 435.3 346 60.7
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 6.6e-120 434.9 344 61.0
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 6.6e-120 434.9 344 61.0
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 8.7e-120 434.5 344 61.9
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 1.1e-119 434.1 344 61.0
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.5e-119 433.7 344 61.3
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 1.5e-119 433.7 344 60.8
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 1.5e-119 433.7 313 65.8
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.9e-119 433.3 344 61.0
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.9e-119 433.3 348 61.8
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 1.9e-119 433.3 344 61.0
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.9e-119 433.3 335 63.0
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 2.5e-119 433.0 344 61.0
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 3.3e-119 432.6 348 60.9
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 4.3e-119 432.2 348 60.6
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 4.3e-119 432.2 345 60.9
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 7.4e-119 431.4 350 60.3
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 9.6e-119 431.0 393 57.3
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 9.6e-119 431.0 344 60.8
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 9.6e-119 431.0 344 60.5
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 1.6e-118 430.3 350 61.1
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 2.1e-118 429.9 340 61.8
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 2.1e-118 429.9 355 59.4
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 2.8e-118 429.5 343 60.3
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 8.1e-118 427.9 349 59.9
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 8.1e-118 427.9 344 60.2
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 1.1e-117 427.6 332 61.7
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 1.4e-117 427.2 335 61.5
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.8e-117 426.8 371 57.7
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 1.8e-117 426.8 371 57.7
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 2.4e-117 426.4 335 61.2
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 9.0e-117 424.5 344 59.6
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 9.0e-117 424.5 332 61.7
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.6e-116 422.9 328 62.2
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 2.6e-116 422.9 328 62.2
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 2.6e-116 422.9 340 60.6
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 2.6e-116 422.9 335 61.2
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 2.6e-116 422.9 329 61.7
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 7.6e-116 421.4 332 61.1
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 7.6e-116 421.4 328 62.2
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 9.9e-116 421.0 331 61.9
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 1.7e-115 420.2 327 63.0
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 2.2e-115 419.9 365 57.0
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 2.2e-115 419.9 344 59.6
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 2.2e-115 419.9 332 60.5
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 6.4e-115 418.3 335 60.6
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.4e-115 417.9 341 60.1
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 8.4e-115 417.9 327 61.8
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.1e-114 417.5 326 62.0
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 1.4e-114 417.2 335 60.6
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 1.4e-114 417.2 325 61.8
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 1.4e-114 417.2 325 61.8
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.4e-114 417.2 373 56.3
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.9e-114 416.8 362 57.5
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 1.9e-114 416.8 335 60.3
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 1.9e-114 416.8 328 61.3
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.9e-114 416.8 328 61.9
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 2.4e-114 416.4 336 61.6
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 7.1e-114 414.8 326 61.7
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 7.1e-114 414.8 344 60.2
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 9.3e-114 414.5 335 60.6
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 1.2e-113 414.1 325 60.9
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 3.5e-113 412.5 354 59.0
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.0e-112 409.5 325 61.2
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 3.9e-112 409.1 325 61.2
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.9e-112 409.1 325 61.2
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 3.9e-112 409.1 325 61.2
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.7e-112 407.9 325 61.2
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 1.9e-111 406.8 344 59.0
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 3.3e-111 406.0 326 60.7
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 4.3e-111 405.6 369 54.7
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 2.1e-110 403.3 364 54.7
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 9.0e-109 397.9 321 59.8
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 1.2e-108 397.5 342 57.6
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 3.3e-103 379.4 289 63.3
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 3.7e-102 375.9 335 55.8
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.2e-100 370.9 327 59.3
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 6.5e-99 365.2 332 56.0
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 6.5e-99 365.2 332 56.0
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.1e-98 364.4 354 52.5
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 9.3e-98 361.3 282 63.5
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 2.1e-97 360.1 326 54.6
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 6.1e-97 358.6 361 52.4
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 1.0e-96 357.8 335 54.6
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.3e-96 357.5 363 51.2
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.8e-96 357.1 337 54.3
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 5.1e-96 355.5 343 53.9
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 6.7e-96 355.1 347 52.7
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 6.7e-96 355.1 347 52.7
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 6.7e-96 355.1 347 52.7
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 8.7e-96 354.8 337 53.7
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 6.9e-93 345.1 345 51.9
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 1.2e-92 344.4 345 51.6
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.0e-92 343.6 336 53.0
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 2.5e-87 326.6 253 64.8
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 2.6e-84 316.6 347 49.6
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 3.4e-84 316.2 280 58.2
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.5e-79 300.8 288 51.7
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 3.1e-77 293.1 348 44.3
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 2.7e-73 280.0 237 59.9
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 1.3e-70 271.2 230 60.4
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 1.8e-64 250.8 266 52.3
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 1.8e-64 250.8 225 57.8
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 7.0e-61 238.8 206 61.7
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.2e-60 238.0 282 46.1
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 2.4e-53 213.8 191 57.1
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 6.6e-51 205.7 245 46.9
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.1e-45 186.4 195 52.3
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 2.1e-41 174.1 344 33.4
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 8.6e-35 152.1 220 41.8
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 4.4e-31 139.8 146 47.9
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 5.8e-31 139.4 104 65.4
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 8.3e-30 135.6 232 37.5
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.0e-27 128.6 146 48.6
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 8.1e-25 119.0 108 54.6
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 7.6e-23 112.5 96 55.2
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 9.9e-23 112.1 158 41.1
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 1.1e-21 108.6 158 40.5
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 2.4e-21 107.5 96 52.1
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 7.1e-21 105.9 117 49.6
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 1.6e-20 104.8 100 51.0
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 3.5e-20 103.6 77 61.0
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.1e-17 94.4 139 38.1
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.0e-16 90.1 71 56.3
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 6.9e-16 89.4 155 34.2
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 2.6e-15 87.4 76 55.3
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 6.4e-14 82.8 124 40.3
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 5.4e-13 79.7 74 48.6
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 4.6e-12 76.6 103 41.7
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 5.1e-11 73.2 156 30.8
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 6.6e-11 72.8 121 36.4
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 1.5e-10 71.6 57 59.6
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 4.0e-08 63.5 50 52.0


User provided reference genes

Program Settings