Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 0.0e+00 2863.6 2661 100.0
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 1.4e-14 87.8 215 28.4
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 4.8e-12 79.3 182 29.1
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.4e-11 77.8 182 29.7
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 1.8e-11 77.4 182 29.7
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 4.1e-11 76.3 182 28.6
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 5.3e-11 75.9 182 28.6
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 5.3e-11 75.9 182 28.6
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 9.1e-11 75.1 182 29.1
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.6e-10 74.3 170 29.4
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 2.0e-10 73.9 215 27.0
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 2.0e-10 73.9 168 28.6
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.0e-10 73.9 214 28.5
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 2.6e-10 73.6 215 27.0
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 2.6e-10 73.6 215 27.0
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 3.5e-10 73.2 215 26.5
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 3.5e-10 73.2 215 27.0
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 3.5e-10 73.2 215 27.0
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 3.5e-10 73.2 215 27.0
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 3.5e-10 73.2 168 29.2
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 4.5e-10 72.8 221 27.1
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 4.5e-10 72.8 212 26.9
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 4.5e-10 72.8 181 27.6
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 5.9e-10 72.4 197 27.4
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 7.7e-10 72.0 202 29.7
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 7.7e-10 72.0 168 28.6
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 7.7e-10 72.0 181 28.7
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 1.0e-09 71.6 180 28.9
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.0e-09 71.6 215 27.0
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 1.3e-09 71.2 180 30.0
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 1.7e-09 70.9 197 28.4
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 1.7e-09 70.9 197 27.9
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.7e-09 70.9 170 28.2
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 1.7e-09 70.9 180 29.4
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 1.7e-09 70.9 168 28.0
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.7e-09 70.9 170 28.8
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 1.7e-09 70.9 182 29.7
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 2.2e-09 70.5 217 28.6
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 2.2e-09 70.5 180 28.3
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 2.9e-09 70.1 182 27.5
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 2.9e-09 70.1 180 28.3
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 3.8e-09 69.7 200 26.0
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 3.8e-09 69.7 212 25.9
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 3.8e-09 69.7 180 27.8
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 5.0e-09 69.3 180 28.3
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 5.0e-09 69.3 206 28.2
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 5.0e-09 69.3 170 28.2
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 5.0e-09 69.3 226 27.4
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 5.0e-09 69.3 204 26.5
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 6.5e-09 68.9 180 26.7
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 6.5e-09 68.9 168 27.4
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 8.5e-09 68.6 182 26.9
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 8.5e-09 68.6 211 28.9
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 8.5e-09 68.6 182 28.0
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 8.5e-09 68.6 182 27.5
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 8.5e-09 68.6 180 30.0
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 8.5e-09 68.6 180 30.0
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 8.5e-09 68.6 190 27.9
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 8.5e-09 68.6 170 27.6
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.1e-08 68.2 200 26.5
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.1e-08 68.2 195 26.7
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 1.1e-08 68.2 246 27.6
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 1.5e-08 67.8 180 29.4
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 1.5e-08 67.8 192 27.6
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 1.5e-08 67.8 168 29.2
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.9e-08 67.4 217 26.3
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.9e-08 67.4 182 28.6
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 3.2e-08 66.6 182 26.4
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 3.2e-08 66.6 180 28.3
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 4.2e-08 66.2 222 26.6
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 5.5e-08 65.9 182 28.0
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 5.5e-08 65.9 183 24.0
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 5.5e-08 65.9 139 30.9
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 9.4e-08 65.1 180 26.7
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 9.4e-08 65.1 182 26.4
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.2e-07 64.7 170 27.1
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 1.2e-07 64.7 182 27.5
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 2.1e-07 63.9 223 25.1
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 2.1e-07 63.9 180 27.2
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.7e-07 63.5 212 25.9
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 2.7e-07 63.5 180 26.1
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 4.7e-07 62.8 170 25.3
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 4.7e-07 62.8 197 25.9
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 6.1e-07 62.4 162 27.2
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 8.0e-07 62.0 198 28.3
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 1.0e-06 61.6 182 25.3
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.8e-06 60.8 231 23.4
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 3.0e-06 60.1 102 31.4
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 4.0e-06 59.7 146 28.1
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 4.0e-06 59.7 180 26.7
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.0e-06 59.7 231 22.9
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 4.0e-06 59.7 182 26.4
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 4.0e-06 59.7 95 33.7
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.2e-06 59.3 231 22.9
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 6.7e-06 58.9 168 25.6


User provided reference genes

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