Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.5e-312 1073.9 654 100.0
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 2.7e-126 456.8 615 50.9
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 2.7e-73 280.8 334 51.8
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 5.1e-56 223.4 328 44.5
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.9e-55 221.5 328 43.9
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 4.3e-55 220.3 328 43.0
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 4.3e-55 220.3 328 43.6
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 4.3e-55 220.3 328 43.0
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 9.6e-55 219.2 328 43.0
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 9.6e-55 219.2 332 43.1
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.3e-54 218.8 328 43.3
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.3e-54 218.8 332 43.1
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.8e-54 217.6 328 43.0
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 4.8e-54 216.9 324 42.9
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 8.1e-54 216.1 324 42.9
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 8.1e-54 216.1 327 43.4
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.1e-53 215.7 324 42.9
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.1e-53 215.7 326 43.6
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.4e-53 215.3 328 42.7
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.4e-53 215.3 330 43.9
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.4e-53 215.3 324 42.9
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 1.8e-53 214.9 328 42.7
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.8e-53 214.9 328 42.7
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.8e-53 214.9 328 42.7
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.8e-53 214.9 328 42.7
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.8e-53 214.9 328 43.0
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.8e-53 214.9 328 43.3
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 2.4e-53 214.5 328 41.8
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 4.0e-53 213.8 328 42.7
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 4.0e-53 213.8 328 42.4
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 4.0e-53 213.8 328 42.4
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 4.0e-53 213.8 328 42.4
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 4.0e-53 213.8 324 43.8
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 5.3e-53 213.4 324 42.6
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 5.3e-53 213.4 328 41.5
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 6.9e-53 213.0 327 42.8
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 6.9e-53 213.0 330 42.7
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 6.9e-53 213.0 328 42.1
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 9.0e-53 212.6 328 42.4
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 9.0e-53 212.6 326 42.9
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 9.0e-53 212.6 328 42.4
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 9.0e-53 212.6 326 42.6
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.2e-52 212.2 328 42.7
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 1.5e-52 211.8 328 42.4
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.5e-52 211.8 332 42.2
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 1.5e-52 211.8 326 43.9
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 1.5e-52 211.8 330 43.0
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 2.0e-52 211.5 328 42.1
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 2.0e-52 211.5 328 42.7
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 2.0e-52 211.5 324 42.6
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 2.0e-52 211.5 328 42.7
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 2.0e-52 211.5 332 42.5
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.6e-52 211.1 332 41.6
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 2.6e-52 211.1 328 42.4
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 3.4e-52 210.7 337 42.1
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 3.4e-52 210.7 332 41.9
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 3.4e-52 210.7 328 42.4
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.4e-52 210.7 332 42.5
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.5e-52 210.3 332 41.6
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 4.5e-52 210.3 324 42.6
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 4.5e-52 210.3 327 41.6
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 5.8e-52 209.9 324 42.9
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 5.8e-52 209.9 332 42.5
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 5.8e-52 209.9 328 42.1
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.8e-52 209.9 328 42.1
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 5.8e-52 209.9 328 42.1
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 5.8e-52 209.9 326 42.3
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 7.6e-52 209.5 328 41.8
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 7.6e-52 209.5 332 42.2
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 7.6e-52 209.5 332 41.9
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 9.9e-52 209.1 332 41.6
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 9.9e-52 209.1 324 42.6
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 9.9e-52 209.1 328 43.6
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 9.9e-52 209.1 330 42.7
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.7e-51 208.4 328 41.2
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 2.2e-51 208.0 328 41.8
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 2.2e-51 208.0 324 41.4
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 2.2e-51 208.0 332 41.0
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 2.2e-51 208.0 328 41.2
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 2.9e-51 207.6 324 42.0
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 3.8e-51 207.2 319 42.3
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 3.8e-51 207.2 319 42.3
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 3.8e-51 207.2 326 42.9
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 4.9e-51 206.8 329 41.6
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 4.9e-51 206.8 329 41.6
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 4.9e-51 206.8 326 42.9
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.9e-51 206.8 324 41.4
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 4.9e-51 206.8 326 42.6
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 6.4e-51 206.5 315 42.9
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 6.4e-51 206.5 324 41.0
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 8.4e-51 206.1 324 41.0
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.1e-50 205.7 324 41.0
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.1e-50 205.7 326 42.9
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 1.9e-50 204.9 332 41.3
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.9e-50 204.9 322 41.9
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 1.9e-50 204.9 332 41.9
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.9e-50 204.9 332 41.9
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 3.2e-50 204.1 329 40.4
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 4.2e-50 203.8 358 39.1
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.2e-50 203.8 324 41.0
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 5.4e-50 203.4 328 41.2
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 7.1e-50 203.0 324 40.7
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 1.6e-49 201.8 328 41.5
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.6e-49 201.8 328 41.5
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 2.7e-49 201.1 330 42.1
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.5e-49 200.7 351 40.2
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.5e-49 200.7 351 40.2
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.5e-49 200.7 351 40.2
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 4.6e-49 200.3 328 40.9
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.0e-48 199.1 326 40.5
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.0e-48 199.1 315 41.6
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.3e-48 198.7 317 42.6
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 3.0e-48 197.6 317 40.7
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 3.0e-48 197.6 332 41.0
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 3.0e-48 197.6 322 41.0
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 3.0e-48 197.6 332 38.9
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.9e-48 197.2 351 39.6
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.9e-48 197.2 351 39.6
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 6.7e-48 196.4 321 41.1
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 2.5e-47 194.5 329 41.6
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 4.3e-47 193.7 315 41.9
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 9.6e-47 192.6 333 39.3
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.3e-46 192.2 332 40.1
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.8e-46 191.0 321 40.2
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 4.8e-46 190.3 277 44.4
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 4.8e-46 190.3 278 44.6
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 1.1e-45 189.1 326 40.2
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 3.1e-45 187.6 318 40.6
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 7.6e-44 183.0 355 37.2
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 4.9e-43 180.3 330 39.7
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 3.9e-40 170.6 290 41.7
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.3e-39 167.5 271 42.8
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 2.9e-35 154.5 276 40.2
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 6.0e-33 146.7 290 38.3
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 2.5e-31 141.4 282 36.9
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 5.1e-24 117.1 186 40.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 2.0e-23 115.2 204 39.2
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 2.0e-23 115.2 204 39.2
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.8e-22 111.3 206 38.8
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 8.5e-19 99.8 128 46.1
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.0e-16 92.8 165 40.0
PRCOL_00006034 Prasinoderma coloniale HOM05D018374 ORTHO05D049048 1.3e-14 85.9 83 48.2
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.8e-14 84.7 330 26.7
MCO12G393 Micromonas commoda HOM05D018374 ORTHO05D049048 2.0e-12 78.6 85 50.6
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.9e-11 74.7 173 34.1
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.5e-07 62.4 58 51.7
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 1.3e-06 59.3 58 50.0


User provided reference genes

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