Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 4.7e-165 584.7 353 100.0
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 2.8e-32 143.7 294 32.7
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 3.1e-31 140.2 295 33.2
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 1.7e-26 124.4 277 31.0
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 6.6e-26 122.5 280 30.7
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 4.3e-25 119.8 280 30.7
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 5.6e-25 119.4 282 29.1
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 7.3e-25 119.0 282 29.4
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 9.5e-25 118.6 164 36.6
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 1.6e-24 117.9 281 29.2
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.8e-24 117.1 280 29.6
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.8e-24 117.1 280 29.6
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 2.8e-24 117.1 282 29.1
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 3.6e-24 116.7 280 30.4
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 3.6e-24 116.7 281 30.2
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 3.6e-24 116.7 164 37.8
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 3.6e-24 116.7 280 29.3
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 4.7e-24 116.3 280 29.6
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 4.7e-24 116.3 168 35.1
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 6.2e-24 115.9 280 29.6
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 6.2e-24 115.9 281 29.9
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 8.1e-24 115.5 277 29.6
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 1.4e-23 114.8 281 29.9
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 3.1e-23 113.6 164 36.0
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 4.0e-23 113.2 282 29.4
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 4.0e-23 113.2 284 26.8
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 4.0e-23 113.2 164 37.2
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 5.2e-23 112.8 273 27.5
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 5.2e-23 112.8 164 36.0
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 6.8e-23 112.5 281 29.5
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 8.9e-23 112.1 168 34.5
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.2e-22 111.7 284 26.4
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 1.2e-22 111.7 277 28.5
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 1.2e-22 111.7 286 29.7
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 1.2e-22 111.7 287 28.6
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 1.5e-22 111.3 287 29.3
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.5e-22 111.3 168 34.5
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 1.5e-22 111.3 282 28.7
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 2.0e-22 110.9 274 26.6
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 2.0e-22 110.9 168 36.9
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 2.6e-22 110.5 283 26.5
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 2.6e-22 110.5 286 29.4
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 3.4e-22 110.2 164 34.8
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 3.4e-22 110.2 283 29.3
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 4.4e-22 109.8 278 29.1
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 4.4e-22 109.8 283 29.0
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 4.4e-22 109.8 276 28.3
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 5.8e-22 109.4 282 26.6
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 7.5e-22 109.0 281 29.2
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 7.5e-22 109.0 285 28.4
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 7.5e-22 109.0 285 28.4
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 9.9e-22 108.6 162 34.0
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.3e-21 108.2 153 36.6
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.3e-21 108.2 287 27.2
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.3e-21 108.2 287 27.2
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.7e-21 107.8 168 33.9
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 1.7e-21 107.8 283 27.6
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 1.7e-21 107.8 275 28.7
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 2.2e-21 107.5 162 34.6
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 2.2e-21 107.5 283 28.6
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 2.2e-21 107.5 250 28.8
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 2.9e-21 107.1 285 28.8
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 3.7e-21 106.7 168 35.7
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 3.7e-21 106.7 288 28.1
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 3.7e-21 106.7 287 26.8
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 3.7e-21 106.7 321 26.2
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 4.9e-21 106.3 169 33.1
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 4.9e-21 106.3 153 34.6
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 4.9e-21 106.3 161 32.3
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 4.9e-21 106.3 162 33.3
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 4.9e-21 106.3 162 33.3
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 4.9e-21 106.3 164 36.0
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 6.4e-21 105.9 168 33.3
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 8.3e-21 105.5 257 27.2
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 1.1e-20 105.1 282 28.0
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 1.4e-20 104.8 168 33.3
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.4e-20 104.8 285 27.4
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 1.9e-20 104.4 154 34.4
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 4.1e-20 103.2 274 26.6
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 5.4e-20 102.8 248 28.6
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 5.4e-20 102.8 248 28.6
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 5.4e-20 102.8 282 27.7
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 7.1e-20 102.4 164 34.1
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 7.1e-20 102.4 290 28.3
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 9.2e-20 102.1 248 29.8
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 2.1e-19 100.9 282 27.0
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 2.1e-19 100.9 248 28.2
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 2.7e-19 100.5 282 27.3
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.7e-19 100.5 278 28.1
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 6.0e-19 99.4 248 28.6
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 7.8e-19 99.0 160 33.1
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 1.7e-18 97.8 315 25.7
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 3.0e-18 97.1 289 26.3
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 3.9e-18 96.7 289 28.0
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 5.1e-18 96.3 302 30.1
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 5.1e-18 96.3 115 46.1
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 6.6e-18 95.9 255 28.2
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 1.1e-17 95.1 289 26.6
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 1.1e-17 95.1 289 26.6
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 2.5e-17 94.0 281 27.8
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 3.3e-17 93.6 289 25.6
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 3.3e-17 93.6 176 30.7
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 7.3e-17 92.4 167 28.1
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.1e-16 90.9 204 29.4
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.1e-16 90.9 315 25.4
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.1e-16 90.9 315 25.4
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 2.8e-16 90.5 280 28.6
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 1.1e-15 88.6 306 23.2
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 2.4e-15 87.4 140 32.1
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 4.0e-15 86.7 328 24.7
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 5.2e-15 86.3 137 33.6
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 1.2e-14 85.1 134 35.8
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 4.4e-14 83.2 274 25.9
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.7e-13 81.3 232 26.7
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 2.2e-13 80.9 137 32.1
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 1.4e-12 78.2 113 34.5
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.2e-11 75.1 153 31.4
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 2.6e-06 57.4 75 33.3


User provided reference genes

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