Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 7.5e-195 683.7 359 100.0
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 5.9e-115 418.3 234 93.2
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 8.9e-87 324.7 314 60.8
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 3.4e-86 322.8 339 56.3
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 6.4e-85 318.5 323 58.5
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.6e-83 313.9 321 56.7
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 2.7e-83 313.2 323 57.0
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 3.5e-83 312.8 321 57.9
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 3.0e-82 309.7 337 54.9
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 6.6e-82 308.5 322 55.6
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 1.1e-81 307.8 355 52.7
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-81 307.8 337 54.0
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.1e-81 307.8 337 54.0
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.9e-81 307.0 325 55.7
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.9e-81 307.0 340 55.3
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 1.9e-81 307.0 321 57.0
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 2.5e-81 306.6 337 54.0
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 3.3e-81 306.2 337 54.0
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 3.3e-81 306.2 337 54.9
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 3.3e-81 306.2 321 57.3
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 4.3e-81 305.8 337 54.3
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 4.3e-81 305.8 337 53.7
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 4.3e-81 305.8 337 54.9
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 4.3e-81 305.8 333 54.7
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 4.3e-81 305.8 334 54.5
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 5.6e-81 305.4 337 54.3
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 5.6e-81 305.4 322 55.3
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 5.6e-81 305.4 337 53.7
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 5.6e-81 305.4 321 54.8
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 7.3e-81 305.1 338 53.6
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 7.3e-81 305.1 338 53.6
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 7.3e-81 305.1 338 53.6
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 7.3e-81 305.1 322 54.7
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 7.3e-81 305.1 337 53.4
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 9.5e-81 304.7 337 54.6
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 9.5e-81 304.7 322 55.0
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 9.5e-81 304.7 322 55.0
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 9.5e-81 304.7 323 56.3
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 9.5e-81 304.7 322 56.2
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 9.5e-81 304.7 322 56.2
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.2e-80 304.3 350 52.9
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.6e-80 303.9 337 54.6
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.6e-80 303.9 347 53.3
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 2.1e-80 303.5 337 53.7
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 2.1e-80 303.5 339 53.7
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.1e-80 303.5 322 55.9
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 2.8e-80 303.1 337 54.6
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 2.8e-80 303.1 322 55.6
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 2.8e-80 303.1 324 55.6
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 3.6e-80 302.8 324 55.6
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 6.2e-80 302.0 325 55.4
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 6.2e-80 302.0 322 55.6
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.1e-79 301.2 339 53.1
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.4e-79 300.8 322 55.3
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.8e-79 300.4 355 53.5
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.8e-79 300.4 337 53.4
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.8e-79 300.4 337 54.0
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 2.3e-79 300.1 325 54.5
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 3.1e-79 299.7 323 55.1
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 4.0e-79 299.3 322 55.0
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 4.0e-79 299.3 340 53.5
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 4.0e-79 299.3 316 56.0
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.5e-78 297.4 347 52.7
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 2.0e-78 297.0 330 54.5
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 2.6e-78 296.6 338 52.4
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.6e-78 296.6 325 53.8
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 3.4e-78 296.2 340 49.4
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 3.4e-78 296.2 324 55.2
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 3.4e-78 296.2 322 54.7
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 4.4e-78 295.8 348 52.3
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 4.4e-78 295.8 322 54.7
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 4.4e-78 295.8 348 52.3
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 5.8e-78 295.4 322 54.0
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 5.8e-78 295.4 321 54.5
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 5.8e-78 295.4 323 55.1
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 9.9e-78 294.7 323 54.5
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 9.9e-78 294.7 324 54.9
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 9.9e-78 294.7 348 52.6
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 1.3e-77 294.3 339 53.1
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 1.7e-77 293.9 322 55.3
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 2.2e-77 293.5 325 52.9
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 2.9e-77 293.1 322 54.7
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 2.9e-77 293.1 324 54.3
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 2.9e-77 293.1 323 53.9
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 6.4e-77 292.0 325 53.8
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 8.3e-77 291.6 340 53.5
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 8.3e-77 291.6 322 54.7
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 8.3e-77 291.6 322 54.3
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.1e-76 291.2 322 54.3
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.4e-76 290.8 329 54.1
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.4e-76 290.8 322 55.6
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 1.9e-76 290.4 322 55.0
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.9e-76 290.4 323 53.9
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.9e-76 290.4 317 54.9
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 2.4e-76 290.0 321 53.3
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 3.2e-76 289.7 325 53.2
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 4.1e-76 289.3 321 55.5
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 4.1e-76 289.3 322 54.3
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 5.4e-76 288.9 322 54.3
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.4e-76 288.9 324 54.6
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 7.1e-76 288.5 324 54.3
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.6e-75 287.3 322 53.7
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 1.6e-75 287.3 324 54.3
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.1e-75 287.0 314 54.8
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 2.1e-75 287.0 324 54.3
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.7e-75 286.6 304 54.9
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 3.5e-75 286.2 316 54.4
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.5e-75 286.2 322 54.3
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.6e-75 285.8 322 54.3
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 4.6e-75 285.8 321 53.0
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.0e-75 285.4 322 54.0
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 7.8e-75 285.0 322 54.3
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 1.3e-74 284.3 324 53.7
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 1.7e-74 283.9 321 52.6
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.0e-74 283.1 304 54.6
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 6.6e-74 282.0 321 52.3
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.5e-73 280.0 304 54.6
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 6.2e-72 275.4 316 52.2
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.6e-70 270.0 302 54.3
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 4.4e-70 269.2 302 54.3
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 7.6e-70 268.5 302 54.3
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 7.6e-70 268.5 325 52.3
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.7e-66 257.3 313 51.1
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 5.3e-63 245.7 268 53.4
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 9.9e-62 241.5 336 48.2
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.3e-61 241.1 314 46.5
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 7.1e-60 235.3 294 46.6
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 7.8e-59 231.9 232 55.6
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 3.0e-58 229.9 245 55.5
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 4.3e-57 226.1 245 55.5
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 9.0e-55 218.4 236 55.1
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 8.4e-53 211.8 239 53.6
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.4e-52 211.1 322 42.2
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 2.4e-52 210.3 204 55.9
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.5e-49 200.3 338 43.8
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 9.3e-44 181.8 313 39.9
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.8e-34 151.0 213 44.6
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.1e-31 140.2 170 47.6
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.1e-28 131.7 216 44.0
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 1.0e-21 108.6 126 50.0
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 1.7e-21 107.8 158 42.4
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 2.3e-18 97.4 103 51.5
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 6.7e-18 95.9 92 52.2
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 2.0e-17 94.4 98 51.0
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 9.1e-15 85.5 264 29.5
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.2e-14 85.1 131 39.7
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.2e-14 85.1 99 46.5
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 7.7e-14 82.4 78 55.1
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 3.8e-13 80.1 307 29.0
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 8.0e-11 72.4 99 44.4
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 3.0e-10 70.5 83 45.8
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-09 68.6 65 55.4
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 3.7e-08 63.5 75 44.0
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 4.8e-08 63.2 75 44.0
Ca_29028_v3 Cicer arietinum L. HOM05D020748 ORTHO05D028602 1.4e-07 61.6 140 34.3
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.0e-06 57.8 52 53.8
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 7.7e-06 55.8 105 32.4


User provided reference genes

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