Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g081650 Chlamydomonas reinhardtii HOM05D007118 ORTHO05D008957 0.0e+00 1412.9 722 100.0
Sp2g17370 Schrenkiella parvula HOM05D007118 ORTHO05D008957 8.4e-36 156.4 642 26.8
ATR1120G196 Amborella trichopoda HOM05D007118 ORTHO05D008957 1.8e-33 148.7 621 28.2
A06p40390 Brassica napus HOM05D007118 ORTHO05D008957 3.9e-33 147.5 561 26.7
BraA06t26957Z Brassica rapa HOM05D007118 ORTHO05D008957 3.9e-33 147.5 561 26.7
PGSC0003DMG400018098 Solanum tuberosum HOM05D007118 ORTHO05D008957 5.1e-33 147.1 621 26.1
C07p37660 Brassica napus HOM05D007118 ORTHO05D008957 1.5e-32 145.6 566 27.0
BolC7t44283H Brassica oleracea HOM05D007118 ORTHO05D008957 1.5e-32 145.6 566 27.0
TAR374G0129 Trochodendron aralioides HOM05D007118 ORTHO05D008957 1.5e-32 145.6 622 26.8
TAR629G0502 Trochodendron aralioides HOM05D007118 ORTHO05D008957 1.5e-32 145.6 621 26.1
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 1.9e-32 145.2 566 27.0
AUR62031637 Chenopodium quinoa HOM05D007118 ORTHO05D008957 1.9e-32 145.2 647 26.7
THA.LOC104805448 Tarenaya hassleriana HOM05D007118 ORTHO05D008957 2.5e-32 144.8 560 26.2
CSS0004252 Camellia sinensis var. sinensis HOM05D007118 ORTHO05D008957 7.4e-32 143.3 617 25.9
Mapoly0051s0046 Marchantia polymorpha HOM05D007118 ORTHO05D008957 7.4e-32 143.3 628 25.8
Solyc02g087720.1 Solanum lycopersicum HOM05D007118 ORTHO05D008957 7.4e-32 143.3 621 25.8
Cfa007517 Carpinus fangiana HOM05D007118 ORTHO05D008957 1.3e-31 142.5 643 25.2
CiPaw.03G029400 Carya illinoinensis HOM05D007118 ORTHO05D008957 1.3e-31 142.5 643 25.3
Sopen02g032450 Solanum pennellii HOM05D007118 ORTHO05D008957 1.3e-31 142.5 621 25.6
CAN.G206.124 Capsicum annuum HOM05D007118 ORTHO05D008957 1.4e-30 139.0 623 25.7
AagrBONN_evm.TU.Sc2ySwM_344.3877 Anthoceros agrestis HOM05D007118 ORTHO05D008957 2.4e-30 138.3 681 25.7
CARHR151700 Cardamine hirsuta HOM05D007118 ORTHO05D008957 5.3e-30 137.1 563 27.0
SHI04174 Sapria himalayana HOM05D007118 ORTHO05D008957 5.3e-30 137.1 638 26.3
Dinv33727 Davidia involucrata HOM05D007118 ORTHO05D008957 6.9e-30 136.7 583 26.6
MCO07G741 Micromonas commoda HOM05D007118 ORTHO05D008957 1.2e-29 136.0 820 25.9
Rhsim08G0066600 Rhododendron simsii HOM05D007118 ORTHO05D008957 1.2e-29 136.0 570 26.3
Carub.0005s0727 Capsella rubella HOM05D007118 ORTHO05D008957 1.5e-29 135.6 562 26.7
Cc07_g03080 Coffea canephora HOM05D007118 ORTHO05D008957 1.5e-29 135.6 660 25.6
CsaV3_3G041650 Cucumis sativus L. HOM05D007118 ORTHO05D008957 2.0e-29 135.2 602 26.9
Peaxi162Scf00129g00042 Petunia axillaris HOM05D007118 ORTHO05D008957 2.0e-29 135.2 614 25.4
PGR083G1725 Punica granatum HOM05D007118 ORTHO05D008957 2.0e-29 135.2 647 24.9
DCAR_011156 Daucus carota HOM05D007118 ORTHO05D008957 4.5e-29 134.0 644 24.7
SMO244G0043 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 4.5e-29 134.0 660 26.2
MELO3C009888.2 Cucumis melo HOM05D007118 ORTHO05D008957 7.6e-29 133.3 600 27.0
HPP92_003624 Vanilla planifolia HOM05D007118 ORTHO05D008957 1.3e-28 132.5 518 29.0
Aqoxy3G00736 Aquilegia oxysepala HOM05D007118 ORTHO05D008957 1.7e-28 132.1 619 23.7
Pp3c3_25440 Physcomitrium patens HOM05D007118 ORTHO05D008957 1.7e-28 132.1 608 26.2
Hund13237 Selenicereus undatus HOM05D007118 ORTHO05D008957 1.7e-28 132.1 673 24.8
SMO071G0001 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 2.2e-28 131.7 654 26.1
CBR_g8886 Chara braunii HOM05D007118 ORTHO05D008957 2.9e-28 131.3 638 23.5
Potri.017G078700 Populus trichocarpa HOM05D007118 ORTHO05D008957 2.9e-28 131.3 623 24.4
AUR62038867 Chenopodium quinoa HOM05D007118 ORTHO05D008957 1.1e-27 129.4 477 29.4
Nn4g23068 Nelumbo nucifera HOM05D007118 ORTHO05D008957 1.1e-27 129.4 613 25.3
Sed0001669 Sechium edule HOM05D007118 ORTHO05D008957 1.1e-27 129.4 620 25.5
Aa31LG2G4490 Aethionema arabicum HOM05D007118 ORTHO05D008957 1.4e-27 129.0 639 24.9
CDE04G1934 Ceratophyllum demersum HOM05D007118 ORTHO05D008957 1.4e-27 129.0 616 24.8
Cpa.g.sc14.37 Carica papaya HOM05D007118 ORTHO05D008957 1.9e-27 128.6 560 26.1
Os06g0584200 Oryza sativa ssp. japonica HOM05D007118 ORTHO05D008957 1.9e-27 128.6 560 27.9
TWI32G0076 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 1.9e-27 128.6 628 24.5
unitig_899.g15508 Utricularia gibba HOM05D007118 ORTHO05D008957 2.5e-27 128.3 621 25.9
PSO832G0362 Papaver somniferum HOM05D007118 ORTHO05D008957 3.2e-27 127.9 652 24.1
Phvul.004G026600 Phaseolus vulgaris HOM05D007118 ORTHO05D008957 3.2e-27 127.9 606 26.2
QL02p080749 Quercus lobata HOM05D007118 ORTHO05D008957 3.2e-27 127.9 664 25.2
Sc14g0006000 Simmondsia chinensis HOM05D007118 ORTHO05D008957 3.2e-27 127.9 647 25.5
Sabra17G0069800 Salix brachista HOM05D007118 ORTHO05D008957 5.5e-27 127.1 643 24.0
Haze_14577 Corylus avellana HOM05D007118 ORTHO05D008957 7.2e-27 126.7 476 28.2
Zm00001eb385570 Zea mays HOM05D007118 ORTHO05D008957 7.2e-27 126.7 700 26.3
TWI32G0789 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 9.3e-27 126.3 564 25.7
CANSAT64G2775 Cannabis sativa HOM05D007118 ORTHO05D008957 1.2e-26 125.9 616 24.4
Lj2g0024860 Lotus japonicus HOM05D007118 ORTHO05D008957 1.2e-26 125.9 575 25.4
Prupe.3G271300 Prunus persica HOM05D007118 ORTHO05D008957 1.2e-26 125.9 471 28.7
EL10Ac2g02939 Beta vulgaris HOM05D007118 ORTHO05D008957 1.6e-26 125.6 626 25.2
ECA238G0821 Erigeron canadensis HOM05D007118 ORTHO05D008957 1.6e-26 125.6 573 26.4
PSO591G0390 Papaver somniferum HOM05D007118 ORTHO05D008957 1.6e-26 125.6 652 23.6
AT3G28720 Arabidopsis thaliana HOM05D007118 ORTHO05D008957 3.5e-26 124.4 446 28.3
MD17G1047800 Malus domestica HOM05D007118 ORTHO05D008957 1.0e-25 122.9 624 24.8
VMungo0464G1357 Vigna mungo HOM05D007118 ORTHO05D008957 1.0e-25 122.9 565 26.4
TWI60G1543 Tripterygium wilfordii HOM05D007118 ORTHO05D008957 3.9e-25 120.9 569 25.5
Gorai.006G025500 Gossypium raimondii HOM05D007118 ORTHO05D008957 5.1e-25 120.6 623 24.7
Lju41C25G1 Lonicera japonica HOM05D007118 ORTHO05D008957 5.1e-25 120.6 417 30.2
Ciclev10011233m.g Citrus clementina HOM05D007118 ORTHO05D008957 8.7e-25 119.8 608 24.7
Oeu060923.1 Olea europaea HOM05D007118 ORTHO05D008957 8.7e-25 119.8 574 25.8
RcHm_v2.0_Chr2g0169061 Rosa chinensis HOM05D007118 ORTHO05D008957 8.7e-25 119.8 471 28.0
FAN14G3290 Fragaria x ananassa HOM05D007118 ORTHO05D008957 1.9e-24 118.6 471 28.5
PRCOL_00001393 Prasinoderma coloniale HOM05D007118 ORTHO05D008957 2.5e-24 118.2 569 26.4
FvH4_6g49180 Fragaria vesca HOM05D007118 ORTHO05D008957 3.3e-24 117.9 472 28.6
Gohir.D09G021500 Gossypium hirsutum HOM05D007118 ORTHO05D008957 3.3e-24 117.9 622 24.8
Actinidia10548 Actinidia chinensis HOM05D007118 ORTHO05D008957 4.3e-24 117.5 465 27.1
Duzib147G0587 Durio zibethinus HOM05D007118 ORTHO05D008957 5.7e-24 117.1 471 26.8
FAN05G1119 Fragaria x ananassa HOM05D007118 ORTHO05D008957 5.7e-24 117.1 471 28.5
SalBow1G1856 Salvia bowleyana HOM05D007118 ORTHO05D008957 5.7e-24 117.1 561 26.2
FAN02G1928 Fragaria x ananassa HOM05D007118 ORTHO05D008957 2.2e-23 115.2 471 28.0
FAN09G1522 Fragaria x ananassa HOM05D007118 ORTHO05D008957 2.2e-23 115.2 471 28.2
Lsat_1_v5_gn_2_88681 Lactuca sativa HOM05D007118 ORTHO05D008957 2.2e-23 115.2 623 24.9
Migut.H00894 Erythranthe guttata HOM05D007118 ORTHO05D008957 2.8e-23 114.8 457 27.4
MD09G1047700 Malus domestica HOM05D007118 ORTHO05D008957 2.8e-23 114.8 560 25.0
Gohir.A09G022300 Gossypium hirsutum HOM05D007118 ORTHO05D008957 3.7e-23 114.4 558 25.4
HanXRQChr14g0449321 Helianthus annuus HOM05D007118 ORTHO05D008957 4.8e-23 114.0 624 24.8
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 4.8e-23 114.0 459 26.4
Glyma.19G020300 Glycine max HOM05D007118 ORTHO05D008957 6.3e-23 113.6 436 27.3
TPR.G4266 Trifolium pratense HOM05D007118 ORTHO05D008957 8.2e-23 113.2 489 26.0
Manes.15G176912 Manihot esculenta HOM05D007118 ORTHO05D008957 1.4e-22 112.5 629 24.2
Atru.chr8.1899 Acer truncatum HOM05D007118 ORTHO05D008957 2.4e-22 111.7 440 27.7
ClCG10G014860 Citrullus lanatus HOM05D007118 ORTHO05D008957 5.3e-22 110.5 441 27.4
MSTRG.3219 Avicennia marina HOM05D007118 ORTHO05D008957 9.0e-22 109.8 468 26.7
Psat1g078560 Pisum sativum HOM05D007118 ORTHO05D008957 1.2e-21 109.4 545 26.1
Ca_04268_v3 Cicer arietinum L. HOM05D007118 ORTHO05D008957 1.5e-21 109.0 480 26.5
Lalb_Chr02g0159561 Lupinus albus HOM05D007118 ORTHO05D008957 3.4e-21 107.8 563 25.2
Medtr6g011480 Medicago truncatula HOM05D007118 ORTHO05D008957 1.7e-20 105.5 482 26.3
Potri.004G123900 Populus trichocarpa HOM05D007118 ORTHO05D008957 8.5e-20 103.2 471 25.5
Ah.12g065380 Amaranthus hybridus HOM05D007118 ORTHO05D008957 1.8e-17 95.5 648 24.4
Thecc.04G076000 Theobroma cacao HOM05D007118 ORTHO05D008957 8.8e-17 93.2 468 25.0
Nitab4.5_0000564g0280 Nicotiana tabacum HOM05D007118 ORTHO05D008957 2.0e-13 82.0 269 29.7
SMO244G0004 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 4.5e-13 80.9 248 28.2
SMO244G0083 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 4.5e-13 80.9 248 28.2
Nitab4.5_0009739g0010 Nicotiana tabacum HOM05D007118 ORTHO05D008957 5.9e-13 80.5 253 30.4
SMO244G0031 Selaginella moellendorffii HOM05D007118 ORTHO05D008957 1.6e-10 72.4 248 27.8
Hma1.2p1_2982F.1_g331230 Hydrangea macrophylla HOM05D007118 ORTHO05D008957 2.7e-10 71.6 313 27.2


User provided reference genes

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