Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre02.g080250 Chlamydomonas reinhardtii HOM05D003967 ORTHO05D004531 1.8e-102 375.9 188 100.0
PRCOL_00004130 Prasinoderma coloniale HOM05D003967 ORTHO05D004531 1.7e-20 103.6 72 58.3
MCO11G375 Micromonas commoda HOM05D003967 ORTHO05D004531 4.9e-20 102.1 83 49.4
vmacro02812 Vaccinium macrocarpon HOM05D003967 ORTHO05D004531 4.9e-12 75.5 154 31.8
HPP92_019774 Vanilla planifolia HOM05D003967 ORTHO05D004531 6.4e-12 75.1 68 45.6
Rhsim01G0073700 Rhododendron simsii HOM05D003967 ORTHO05D004531 8.4e-12 74.7 81 43.2
AUR62018499 Chenopodium quinoa HOM05D003967 ORTHO05D004531 1.9e-11 73.6 148 35.1
Cre16.g684300 Chlamydomonas reinhardtii HOM05D003967 ORTHO05D004531 1.9e-11 73.6 121 37.2
Pp3c10_6170 Physcomitrium patens HOM05D003967 ORTHO05D004531 1.9e-11 73.6 156 32.1
CBR_g19400 Chara braunii HOM05D003967 ORTHO05D004531 4.2e-11 72.4 69 44.9
Duzib133G1035 Durio zibethinus HOM05D003967 ORTHO05D004531 4.2e-11 72.4 79 44.3
AUR62020921 Chenopodium quinoa HOM05D003967 ORTHO05D004531 7.1e-11 71.6 148 35.1
Rhsim01G0072900 Rhododendron simsii HOM05D003967 ORTHO05D004531 7.1e-11 71.6 62 48.4
Rhsim09G0097000 Rhododendron simsii HOM05D003967 ORTHO05D004531 7.1e-11 71.6 62 50.0
DCAR_022129 Daucus carota HOM05D003967 ORTHO05D004531 9.3e-11 71.2 74 41.9
Oeu057847.1 Olea europaea HOM05D003967 ORTHO05D004531 1.2e-10 70.9 74 47.3
Lj2P1118T62 Lonicera japonica HOM05D003967 ORTHO05D004531 1.6e-10 70.5 77 44.2
SMO361G0364 Selaginella moellendorffii HOM05D003967 ORTHO05D004531 2.1e-10 70.1 92 34.8
unitig_0.g411 Utricularia gibba HOM05D003967 ORTHO05D004531 2.1e-10 70.1 70 47.1
Cfa013303 Carpinus fangiana HOM05D003967 ORTHO05D004531 2.7e-10 69.7 102 39.2
CiPaw.14G043300 Carya illinoinensis HOM05D003967 ORTHO05D004531 2.7e-10 69.7 61 49.2
Ciclev10016703m.g Citrus clementina HOM05D003967 ORTHO05D004531 2.7e-10 69.7 78 42.3
TPR.G23545 Trifolium pratense HOM05D003967 ORTHO05D004531 2.7e-10 69.7 69 42.0
TPR.G38809 Trifolium pratense HOM05D003967 ORTHO05D004531 2.7e-10 69.7 69 42.0
MELO3C022654.2 Cucumis melo HOM05D003967 ORTHO05D004531 3.5e-10 69.3 78 43.6
DCAR_003383 Daucus carota HOM05D003967 ORTHO05D004531 3.5e-10 69.3 62 48.4
Solyc06g083110.2 Solanum lycopersicum HOM05D003967 ORTHO05D004531 3.5e-10 69.3 88 42.0
Sopen06g034500 Solanum pennellii HOM05D003967 ORTHO05D004531 3.5e-10 69.3 88 42.0
Aa31sc38G120 Aethionema arabicum HOM05D003967 ORTHO05D004531 4.6e-10 68.9 69 43.5
Cc01_g16220 Coffea canephora HOM05D003967 ORTHO05D004531 4.6e-10 68.9 92 40.2
Haze_21784 Corylus avellana HOM05D003967 ORTHO05D004531 4.6e-10 68.9 102 39.2
Migut.N00661 Erythranthe guttata HOM05D003967 ORTHO05D004531 4.6e-10 68.9 74 45.9
Gohir.A11G142100 Gossypium hirsutum HOM05D003967 ORTHO05D004531 4.6e-10 68.9 107 36.4
Gohir.D11G148400 Gossypium hirsutum HOM05D003967 ORTHO05D004531 4.6e-10 68.9 107 36.4
Gorai.007G159100 Gossypium raimondii HOM05D003967 ORTHO05D004531 4.6e-10 68.9 107 36.4
HanXRQChr17g0556271 Helianthus annuus HOM05D003967 ORTHO05D004531 4.6e-10 68.9 70 48.6
Medtr4g005520 Medicago truncatula HOM05D003967 ORTHO05D004531 4.6e-10 68.9 69 43.5
Nitab4.5_0000038g0070 Nicotiana tabacum HOM05D003967 ORTHO05D004531 4.6e-10 68.9 92 40.2
ATR0598G008 Amborella trichopoda HOM05D003967 ORTHO05D004531 6.0e-10 68.6 77 40.3
CANSAT01G2467 Cannabis sativa HOM05D003967 ORTHO05D004531 6.0e-10 68.6 109 34.9
CAN.G874.26 Capsicum annuum HOM05D003967 ORTHO05D004531 6.0e-10 68.6 74 45.9
CARHR078570 Cardamine hirsuta HOM05D003967 ORTHO05D004531 6.0e-10 68.6 69 42.0
Nitab4.5_0002463g0050 Nicotiana tabacum HOM05D003967 ORTHO05D004531 6.0e-10 68.6 88 40.9
Nitab4.5_0004393g0050 Nicotiana tabacum HOM05D003967 ORTHO05D004531 6.0e-10 68.6 88 40.9
Oeu003635.1 Olea europaea HOM05D003967 ORTHO05D004531 6.0e-10 68.6 74 45.9
Pp3c14_5410 Physcomitrium patens HOM05D003967 ORTHO05D004531 6.0e-10 68.6 139 34.5
SalBow6G0539 Salvia bowleyana HOM05D003967 ORTHO05D004531 6.0e-10 68.6 70 47.1
PGSC0003DMG400020113 Solanum tuberosum HOM05D003967 ORTHO05D004531 6.0e-10 68.6 74 45.9
TAR362G0123 Trochodendron aralioides HOM05D003967 ORTHO05D004531 6.0e-10 68.6 70 47.1
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 7.9e-10 68.2 70 47.1
ClCG07G014610 Citrullus lanatus HOM05D003967 ORTHO05D004531 7.9e-10 68.2 70 47.1
Nn5g27563 Nelumbo nucifera HOM05D003967 ORTHO05D004531 7.9e-10 68.2 70 47.1
Psat7g264400 Pisum sativum HOM05D003967 ORTHO05D004531 7.9e-10 68.2 96 36.5
Potri.002G250200 Populus trichocarpa HOM05D003967 ORTHO05D004531 7.9e-10 68.2 70 47.1
Sabra02G0190500 Salix brachista HOM05D003967 ORTHO05D004531 7.9e-10 68.2 70 47.1
Sed0026883 Sechium edule HOM05D003967 ORTHO05D004531 7.9e-10 68.2 70 47.1
SGA_v2.0_scaffold8G04498 Striga asiatica HOM05D003967 ORTHO05D004531 7.9e-10 68.2 74 45.9
TWI18G0741 Tripterygium wilfordii HOM05D003967 ORTHO05D004531 7.9e-10 68.2 89 43.8
TAR633G1936 Trochodendron aralioides HOM05D003967 ORTHO05D004531 7.9e-10 68.2 70 47.1
arahy.Tifrunner.gnm1.ann1.NYJU0L Arachis hypogaea HOM05D003967 ORTHO05D004531 1.0e-09 67.8 70 47.1
MSTRG.17973 Avicennia marina HOM05D003967 ORTHO05D004531 1.0e-09 67.8 74 45.9
CiPaw.13G054600 Carya illinoinensis HOM05D003967 ORTHO05D004531 1.0e-09 67.8 70 47.1
Ciclev10033520m.g Citrus clementina HOM05D003967 ORTHO05D004531 1.0e-09 67.8 70 47.1
CsaV3_3G030630 Cucumis sativus L. HOM05D003967 ORTHO05D004531 1.0e-09 67.8 70 45.7
ECA233G3419 Erigeron canadensis HOM05D003967 ORTHO05D004531 1.0e-09 67.8 70 47.1
Lsat_1_v5_gn_8_128201 Lactuca sativa HOM05D003967 ORTHO05D004531 1.0e-09 67.8 70 47.1
Lj3g0022091 Lotus japonicus HOM05D003967 ORTHO05D004531 1.0e-09 67.8 73 41.1
PGR031G2843 Punica granatum HOM05D003967 ORTHO05D004531 1.0e-09 67.8 136 34.6
QL09p045921 Quercus lobata HOM05D003967 ORTHO05D004531 1.0e-09 67.8 112 35.7
QL09p045954 Quercus lobata HOM05D003967 ORTHO05D004531 1.0e-09 67.8 112 35.7
Sc25g0005680 Simmondsia chinensis HOM05D003967 ORTHO05D004531 1.0e-09 67.8 70 47.1
CSS0024083 Camellia sinensis var. sinensis HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
Dinv13676 Davidia involucrata HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
Duzib211G0344 Durio zibethinus HOM05D003967 ORTHO05D004531 1.3e-09 67.4 70 45.7
FvH4_6g37080 Fragaria vesca HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
FAN02G3806 Fragaria x ananassa HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
FAN05G3499 Fragaria x ananassa HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
FAN09G2378 Fragaria x ananassa HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
FAN14G1834 Fragaria x ananassa HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
Gohir.A07G090300 Gossypium hirsutum HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
Gohir.D07G095000 Gossypium hirsutum HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
Gorai.001G102300 Gossypium raimondii HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
MD09G1163500 Malus domestica HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
MD17G1164100 Malus domestica HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
PSO541G0049 Papaver somniferum HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
PSO675G2743 Papaver somniferum HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
PSO832G2093 Papaver somniferum HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
Prupe.3G021000 Prunus persica HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
QL08p061776 Quercus lobata HOM05D003967 ORTHO05D004531 1.3e-09 67.4 103 36.9
RcHm_v2.0_Chr2g0149631 Rosa chinensis HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
Sp7g09800 Schrenkiella parvula HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
Thecc.01G211900 Theobroma cacao HOM05D003967 ORTHO05D004531 1.3e-09 67.4 107 35.5
TWI36G1715 Tripterygium wilfordii HOM05D003967 ORTHO05D004531 1.3e-09 67.4 107 34.6
TAR365G1067 Trochodendron aralioides HOM05D003967 ORTHO05D004531 1.3e-09 67.4 61 47.5
GSVIVG01031640001 Vitis vinifera HOM05D003967 ORTHO05D004531 1.3e-09 67.4 87 43.7
Atru.chr10.322 Acer truncatum HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
Atru.chr10.339 Acer truncatum HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
Aa31LG5G18010 Aethionema arabicum HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
Ah.13g077680 Amaranthus hybridus HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
AL3G18740 Arabidopsis lyrata HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
AL7G24650 Arabidopsis lyrata HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
AT3G07430 Arabidopsis thaliana HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
AT4G27990 Arabidopsis thaliana HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
arahy.Tifrunner.gnm1.ann1.4AA542 Arachis hypogaea HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
arahy.Tifrunner.gnm1.ann1.52PG7K Arachis hypogaea HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
BcaB03g16171 Brassica carinata HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
BcaC05g28410 Brassica carinata HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
BcaC07g37415 Brassica carinata HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
A06p34930 Brassica napus HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
BolC5t33217H Brassica oleracea HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
BolC8t47739H Brassica oleracea HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
BraA05t21825Z Brassica rapa HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
BraA06t26417Z Brassica rapa HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
Cpa.g.sc8.81 Carica papaya HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
Thhalv10021454m.g Eutrema salsugineum HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
Thhalv10026192m.g Eutrema salsugineum HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
MBI08_g10501_MAGBIO Magnolia biondii HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
Manes.13G053700 Manihot esculenta HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
PSO824G0043 Papaver somniferum HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 45.9
Sp3g06360 Schrenkiella parvula HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
THA.LOC104804641 Tarenaya hassleriana HOM05D003967 ORTHO05D004531 1.8e-09 67.0 61 47.5
Carub.0003s0698 Capsella rubella HOM05D003967 ORTHO05D004531 2.3e-09 66.6 61 45.9
Carub.0007s1281 Capsella rubella HOM05D003967 ORTHO05D004531 2.3e-09 66.6 61 45.9
Glyma.07G002700 Glycine max HOM05D003967 ORTHO05D004531 2.3e-09 66.6 61 47.5
Glyma.08G223900 Glycine max HOM05D003967 ORTHO05D004531 2.3e-09 66.6 61 47.5
Lalb_Chr20g0112681 Lupinus albus HOM05D003967 ORTHO05D004531 2.3e-09 66.6 61 47.5
Phvul.010G163400 Phaseolus vulgaris HOM05D003967 ORTHO05D004531 2.3e-09 66.6 61 47.5
THA.LOC104826649 Tarenaya hassleriana HOM05D003967 ORTHO05D004531 2.3e-09 66.6 61 47.5
VMungo0331G1295 Vigna mungo HOM05D003967 ORTHO05D004531 2.3e-09 66.6 61 47.5
GSVIVG01037857001 Vitis vinifera HOM05D003967 ORTHO05D004531 2.3e-09 66.6 70 45.7
Aqoxy3G01671 Aquilegia oxysepala HOM05D003967 ORTHO05D004531 3.0e-09 66.2 68 42.6
A05p29320 Brassica napus HOM05D003967 ORTHO05D004531 3.0e-09 66.2 54 50.0
C05p44940 Brassica napus HOM05D003967 ORTHO05D004531 3.0e-09 66.2 54 50.0
C08p06830 Brassica napus HOM05D003967 ORTHO05D004531 3.0e-09 66.2 54 50.0
Cc01_g16230 Coffea canephora HOM05D003967 ORTHO05D004531 3.0e-09 66.2 74 41.9
Sed0008239 Sechium edule HOM05D003967 ORTHO05D004531 3.0e-09 66.2 78 42.3
Atru.chr4.1064 Acer truncatum HOM05D003967 ORTHO05D004531 3.9e-09 65.9 98 38.8
HPP92_019020 Vanilla planifolia HOM05D003967 ORTHO05D004531 3.9e-09 65.9 61 47.5
Aqoxy7G02205 Aquilegia oxysepala HOM05D003967 ORTHO05D004531 5.1e-09 65.5 72 37.5
Hma1.2p1_0161F.1_g071330 Hydrangea macrophylla HOM05D003967 ORTHO05D004531 6.7e-09 65.1 69 40.6
SHI10305 Sapria himalayana HOM05D003967 ORTHO05D004531 8.7e-09 64.7 62 46.8
Zm00001eb301730 Zea mays HOM05D003967 ORTHO05D004531 1.1e-08 64.3 78 38.5
BolC7t44889H Brassica oleracea HOM05D003967 ORTHO05D004531 1.5e-08 63.9 61 45.9
CDE05G1038 Ceratophyllum demersum HOM05D003967 ORTHO05D004531 1.5e-08 63.9 148 31.8
EL10Ac5g10641 Beta vulgaris HOM05D003967 ORTHO05D004531 1.9e-08 63.5 85 34.1
C07p43620 Brassica napus HOM05D003967 ORTHO05D004531 2.5e-08 63.2 54 48.1
Hma1.2p1_0161F.1_g071320 Hydrangea macrophylla HOM05D003967 ORTHO05D004531 2.5e-08 63.2 158 31.6
Os07g0185300 Oryza sativa ssp. japonica HOM05D003967 ORTHO05D004531 3.3e-08 62.8 71 38.0
CDE02G4486 Ceratophyllum demersum HOM05D003967 ORTHO05D004531 4.3e-08 62.4 148 31.1
vmacro15744 Vaccinium macrocarpon HOM05D003967 ORTHO05D004531 5.6e-08 62.0 68 41.2
BcaNung01818 Brassica carinata HOM05D003967 ORTHO05D004531 7.4e-08 61.6 61 44.3
DCAR_003878 Daucus carota HOM05D003967 ORTHO05D004531 9.6e-08 61.2 71 36.6
Eucgr.C00730 Eucalyptus grandis HOM05D006390 ORTHO05D007899 3.7e-07 59.3 131 34.4
BNapus_Darmor_BZH_scaffold_109p00040 Brassica napus HOM05D003967 ORTHO05D004531 4.8e-07 58.9 61 39.3
BraA01t04380Z Brassica rapa HOM05D003967 ORTHO05D004531 4.8e-07 58.9 61 39.3
AUR62008132 Chenopodium quinoa HOM05D003967 ORTHO05D004531 6.2e-07 58.5 70 41.4
AUR62028714 Chenopodium quinoa HOM05D003967 ORTHO05D004531 8.1e-07 58.2 70 41.4
Migut.D00725 Erythranthe guttata HOM05D003967 ORTHO05D004531 8.1e-07 58.2 70 42.9
Hma1.2p1_0781F.1_g216900 Hydrangea macrophylla HOM05D003967 ORTHO05D004531 8.1e-07 58.2 62 43.5
Aqoxy7G01043 Aquilegia oxysepala HOM05D006390 ORTHO05D007899 2.4e-06 56.6 87 36.8
BolC1t05549H Brassica oleracea HOM05D003967 ORTHO05D004531 3.1e-06 56.2 61 37.7
Cfa017867 Carpinus fangiana HOM05D006390 ORTHO05D007899 4.0e-06 55.8 66 45.5
Haze_18300 Corylus avellana HOM05D006390 ORTHO05D007899 4.0e-06 55.8 66 45.5
Zm00001eb005830 Zea mays HOM05D006390 ORTHO05D007899 4.0e-06 55.8 93 39.8
CAN.G567.81 Capsicum annuum HOM05D006390 ORTHO05D007899 6.9e-06 55.1 92 37.0
CiPaw.15G091600 Carya illinoinensis HOM05D006390 ORTHO05D007899 6.9e-06 55.1 66 43.9
CBR_g19741 Chara braunii HOM05D006390 ORTHO05D007899 6.9e-06 55.1 69 42.0
Os03g0178200 Oryza sativa ssp. japonica HOM05D006390 ORTHO05D007899 6.9e-06 55.1 144 31.9
PGR031G3115 Punica granatum HOM05D006390 ORTHO05D007899 6.9e-06 55.1 79 39.2
Ciclev10009264m.g Citrus clementina HOM05D006390 ORTHO05D007899 9.0e-06 54.7 69 42.0
ECA234G3179 Erigeron canadensis HOM05D006390 ORTHO05D007899 9.0e-06 54.7 87 35.6
Gohir.A07G019400 Gossypium hirsutum HOM05D006390 ORTHO05D007899 9.0e-06 54.7 66 45.5
Gohir.D07G019200 Gossypium hirsutum HOM05D006390 ORTHO05D007899 9.0e-06 54.7 66 45.5
Gorai.001G019900 Gossypium raimondii HOM05D006390 ORTHO05D007899 9.0e-06 54.7 66 45.5
HanXRQChr10g0305261 Helianthus annuus HOM05D006390 ORTHO05D007899 9.0e-06 54.7 87 35.6
Lj7A221T35 Lonicera japonica HOM05D006390 ORTHO05D007899 9.0e-06 54.7 74 40.5


User provided reference genes

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